CK935676

Overview
NameCK935676
Unique NameCK935676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: RDHE2_MOUSE (Epidermal retinol dehydrogenase 2 OS=Mus musculus GN=Sdr16c5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.460e-11
Identity = 58/194 (29.90%), Postives = 84/194 (43.30%), Query Frame = 3
Query:   84 VLITGVSRGLGRALAQELAKRGHTVIGCS---RTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV----PDGMAIVALNPGVINTDMLTSC 644
            VLITG   GLGR LA + A+ G  ++         D+   L  E      H +   D      V  +A  V ++ G   I++NNAG +   N + D   +  +   D N K    M + F+P MI    G +V +SS  G  G   ++ YCASK+A  G + S+  E       G+    + P  I T M   C
Sbjct:   43 VLITGAGSGLGRLLALQFARLGAVLVLWDVNKEANDETHQLAREAGAARVHAY-TCDCSRREEVYRVADQVKKEVGDVSILINNAGIVTGRNFL-DCPDDLMEKSFDVNFKAHLWMYKAFLPAMIANNHGHLVCISSSAGLIGVNGLSDYCASKFAALGFAESMFIETLAKKQWGIKTTIVCPFFIKTGMFEGC 234          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: RDH3_RAT (Retinol dehydrogenase 3 OS=Rattus norvegicus GN=Rdh3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.460e-11
Identity = 53/187 (28.34%), Postives = 96/187 (51.34%), Query Frame = 3
Query:   84 VLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDI--IVNNAG-TINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEVP-DGMAIVALNPGVINTDM 632
            V ITG   G G  LA++L +RG  V+    T+     L+S+    D    + +D+    S+    + V E+ G   +  +VNNAG ++      W +  ++F +V+D N+ G+  +  + +PL +   +G +VN++S  GR  + +   YC SK+ VE  S S+ +E+   G+ +  + PG   T++
Sbjct:   32 VFITGCDSGFGNLLARQLDRRGMRVLAACLTEKGAEQLRSK--TSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPVGPNEW-MRKKDFASVLDVNLLGVIEVTLNMLPL-VRKARGRVVNIASTMGRM-SLVGGGYCISKYGVEAFSDSLRRELTYFGVKVAIIEPGGFKTNV 213          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: NYC1_ORYSJ (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp. japonica GN=NYC1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.460e-11
Identity = 63/232 (27.16%), Postives = 103/232 (44.40%), Query Frame = 3
Query:    9 GREITITTMAATTPFNGIGKSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSEL-----------PNPDHHLFLNV-------DIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLM-IPIKQGIIVNM-SSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV-PDGMAIVALNPGVINTDMLTS 641
            G  I  T + A +      K+  R V+ITG +RGLG+ALA+E    G  V+  SR+ + +    +EL                 + L+        D+     V++L     ++ G  DI +NNAGT      + + S E+   ++ TN+ G     R  + +M    K G + NM  +G G S   L A Y ++K  +     S+ KE     + +   +PG++ TD+L S
Sbjct:  148 GGVIIGTMIGANSVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVIASRSPESVLQTINELEENIQEGLSVAKKKQREILLHAKVVGTSCDVCKPEDVKKLVNFAKDELGSIDIWINNAGTNKGFRPLVNFSDEDISQIVSTNLVGSLLCTREAMNVMQHQQKGGHVFNMDGAGSGGSSTPLTAVYGSTKCGLRQFQASLLKESRRSKVGVHTASPGMVLTDLLLS 379          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: DHRS1_HUMAN (Dehydrogenase/reductase SDR family member 1 OS=Homo sapiens GN=DHRS1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.460e-11
Identity = 63/205 (30.73%), Postives = 96/205 (46.83%), Query Frame = 3
Query:   48 PFNGIGKSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNV-DIRSNSSVEELARLV-VEKKGVPDIIVNNA-----GTINKNNK-IWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV-PDGMAIVALNPGVINTDML 635
            P NG      +  ++TG SRG+GR +A +L K G TV    R  D L  +  E  +        V D    S V  L   V  E++G  D++VNNA       +N  NK  W+     +D + +  ++G      +   LM+P  QG+IV +SS  G        PY   K A + L+   A E+   G++ V+L PG++ T++L
Sbjct:    4 PMNG------QVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSP-GSLQYMFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELL 201          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: DHR11_CHICK (Dehydrogenase/reductase SDR family member 11 OS=Gallus gallus GN=DHRS11 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.460e-11
Identity = 52/193 (26.94%), Postives = 95/193 (49.22%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPN---PDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIP--IKQGIIVNMSSGWGRS--GAALVAPYCASKWAVEGLSRSVAKEVPDG---MAIVALNPGVINT 626
            R  L+TG S G+G A+A+ L + G  V+GC+R+ DK+  L +E  +   P   +    D+ +   +  +   +       D+ +NNAG + +   +     E + T+ID NV  ++   R     M    I  G I+N++S  G S    ++V  Y A+K+AV  L+  + +E+ +    +    ++PG++ T
Sbjct:    7 RVALVTGASVGIGAAVARALVQHGMKVVGCARSVDKIEKLAAECQSAGYPGTLIPYKCDLSNEEEILSMFSAIKTLHQGVDVCINNAG-LARPEPLLSGKTEGWRTMIDVNVMAVSICTREAYQSMKERNIDDGHIININSMNGHSVVPQSVVHFYSATKYAVTALTEGLRQELREAKTHIRATCISPGLVET 198          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: CBR4_RAT (Carbonyl reductase family member 4 OS=Rattus norvegicus GN=Cbr4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.460e-11
Identity = 57/188 (30.32%), Postives = 94/188 (50.00%), Query Frame = 3
Query:   72 VSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEVP-DGMAIVALNPGVINTDM 632
            + +   + G SRG+G+A+AQ +A++G+ +   +R  +   +  SEL     HL    +I     V      + +  G  + +VN AG IN+++ +     E+  + + TN+ G     R  +  MI  + G IVN+ S  G  G    A Y A+K  + G SRS+AKEV    + +  + PG I+TDM
Sbjct:    1 MDKVCAVFGGSRGIGKAVAQLMAQKGYRLAIVARNLEVAKATASELGGI--HLAFRCNIAKEGDVHSTFEEMEKHLGPVNFLVNAAG-INRDSLLVRTKTEDMLSQLHTNLLGTMLTCRAAMRTMIQ-QGGSIVNVGSIIGLKGNVGQAAYSATKGGLIGFSRSLAKEVARKKIRVNVVAPGFIHTDM 184          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: STDH1_CAEEL (Putative steroid dehydrogenase 1 OS=Caenorhabditis elegans GN=stdh-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 64/224 (28.57%), Postives = 106/224 (47.32%), Query Frame = 3
Query:   66 KSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSEL--PNPDHHLFLNVDIRSNSSVEELARLVVEKKGVP-DIIVNNAGTINKNNKIWDVSPEEFDTVIDT---NVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV-PDGMAIVALNPGVINTDMLTSCFGTSAASYQPPDA--WALKAATTI 710
            K+ +   ++TG + G+G++ + ELAKRG  V   SRTQ KL   + E+   +PD  +       +N SV +  +L+ +   V   I++NN G      ++        D++ +    N      +    +P M+P K GIIVN+ S  G +  A  + Y A+K  VE ++  + KE    G+   A+ P ++ T M     G    S+  PD+  +A  A  TI
Sbjct:   44 KAGASWAVVTGATDGIGKSYSFELAKRGFNVYIVSRTQSKLEHTKKEILEVHPDIEVRFATFDFTNPSVSDYEKLLSKLNEVSIGILINNVGMFFDYPEMLHKINGGIDSIANVTIINTLPATLLSAGILPQMVPRKAGIIVNIGSVAGLATMAEWSVYSATKKYVEWITGCLQKEYGHQGIIFQAITPAMVATKMA----GNPNTSFFTPDSDTFAKSALNTI 263          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: SDR1_PICAB (Short-chain type dehydrogenase/reductase OS=Picea abies PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 61/196 (31.12%), Postives = 89/196 (45.41%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRG-HTVIGCSRTQDKLTSLQSELPNPD-------HHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAG-TINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEVPDGMAIVA--LNPGVINTDM 632
            R  ++TG SRG+GR +A  +A++G   VI  S  Q     + S + N           +    D+   S V +L        G   I+VNNAG T +K   +   S EE+D +   N KG     R     ++    G I+N+SS            Y ASK AVE ++R +A+E+  G  I A  + PG + TDM
Sbjct:   22 RVAIVTGASRGIGREIALNMAEKGAKVVIHYSSNQHAAEEVASIINNKSPSSGDGVRAIVCKADVAEPSQVAQLFDTAEHAFGPLHIVVNNAGVTDSKYPTLAQTSDEEWDRIFQVNCKGAFLCSREAAKRVVRGGGGRIINISSSLVAMPIPRYGAYTASKAAVEMMTRILAQEL-RGTQITANCVAPGPVATDM 216          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: KDUD_ECOLI (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=kduD PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 56/194 (28.87%), Postives = 96/194 (49.48%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCS-----RTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANM----LRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKE-VPDGMAIVALNPGVINTD 629
            +  ++TG   GLG+ +A  LA+ G  ++G +      T +++T+L          L L  D+R    +  L    V + G  DI+VNNAG I + + + + S +++D V++ N+K +  M     +HFI        G I+N++S     G   V  Y ASK  V G++R +A E     + + A+ PG + T+
Sbjct:   11 KVAVVTGCDTGLGQGMALGLAQAGCDIVGINIVEPTETIEQVTALGRRF------LSLTADLRKIDGIPALLDRAVAEFGHIDILVNNAGLIRREDAL-EFSEKDWDDVMNLNIKSVFFMSQAAAKHFI---AQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATN 194          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: DHK2_STRVN (Granaticin polyketide synthase putative ketoacyl reductase 2 OS=Streptomyces violaceoruber GN=gra-orf6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 51/183 (27.87%), Postives = 84/183 (45.90%), Query Frame = 3
Query:   87 LITGVSRGLGRALAQELAKRGH-TVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINK--NNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEVPDGMAIVALNPGVINT 626
            L+TG S G+G+ +AQ LA  G+  V+  +R+ +      + LP+    L++  D+   +    L    VE  G  D++VNNAG      +  +   +PE +  ++  NV G        +P +     G +VN+SS  G   A    PY  S       +R +A  V   + + A+ PG+I T
Sbjct:   12 LVTGSSSGIGQTVAQRLAAEGYRVVVNSARSVEDGEKTAAALPDA---LYVRADVSEEADARRLVDTAVEHYGRLDVLVNNAGRTRAIPHADLAAATPEVWREILGLNVIGTWQTTVAAMPHLARSGNGSVVNVSSIAGSRPAGSSIPYAVSNGGHRAQTRLLANTVGPAVRVNAVAPGLIET 191          
The following BLAST results are available for this feature:
BLAST of CK935676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 245
Match NameE-valueIdentityDescription
RDHE2_MOUSE3.460e-1129.90Epidermal retinol dehydrogenase 2 OS=Mus musculus ... [more]
RDH3_RAT3.460e-1128.34Retinol dehydrogenase 3 OS=Rattus norvegicus GN=Rd... [more]
NYC1_ORYSJ3.460e-1127.16Probable chlorophyll(ide) b reductase NYC1, chloro... [more]
DHRS1_HUMAN3.460e-1130.73Dehydrogenase/reductase SDR family member 1 OS=Hom... [more]
DHR11_CHICK3.460e-1126.94Dehydrogenase/reductase SDR family member 11 OS=Ga... [more]
CBR4_RAT3.460e-1130.32Carbonyl reductase family member 4 OS=Rattus norve... [more]
STDH1_CAEEL4.519e-1128.57Putative steroid dehydrogenase 1 OS=Caenorhabditis... [more]
SDR1_PICAB4.519e-1131.12Short-chain type dehydrogenase/reductase OS=Picea ... [more]
KDUD_ECOLI4.519e-1128.872-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=E... [more]
DHK2_STRVN4.519e-1127.87Granaticin polyketide synthase putative ketoacyl r... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935676 ID=CK935676; Name=CK935676; organism=Citrus sinensis; type=EST; length=924bp
GGGGGAGAGGGAGGGAAATAACAATAACAACGATGGCAGCAACGACGCCG
TTTAACGGGATAGGGAAGAGCGTATCGCGAACAGTACTGATAACGGGAGT
GAGCAGAGGATTAGGGCGAGCCCTAGCTCAAGAGTTGGCCAAGCGCGGCC
ACACCGTGATCGGCTGCTCCCGCACTCAGGATAAGCTCACCTCCCTCCAA
TCAGAACTCCCTAATCCCGACCACCACCTCTTCCTCAATGTCGACATCAG
GTCAAATAGCAGTGTTGAAGAACTAGCACGTCTTGTCGTGGAGAAGAAAG
GCGTTCCTGATATTATAGTAAACAATGCAGGTACTATTAATAAAAATAAC
AAGATTTGGGATGTTTCGCCAGAAGAATTCGACACTGTTATTGATACTAA
TGTGAAAGGCATAGCAAATATGTTGCGTCACTTCATTCCTTTGATGATTC
CAATCAAGCAAGGGATTATCGTTAATATGTCTTCTGGTTGGGGAAGATCT
GGTGCTGCCCTGGTAGCACCTTATTGTGCTTCAAAATGGGCAGTTGAAGG
GTTGTCCAGATCAGTGGCAAAGGAGGTGCCTGATGGGATGGCAATTGTTG
CTTTAAATCCTGGTGTTATTAACACTGACATGCTTACGTCCTGCTTTGGC
ACTTCTGCTGCATCATACCAGCCACCTGATGCATGGGCTTTGAAGGCAGC
TACGACGATACTCAATCTTACAGGAGCAGACAATGGTGCATCTCTTACGG
TGTGACAGAAGCTTTTACATTCAAAATGCTGGGATCCAGCTAGGCGAGCG
TAACAGTTCACTGATAAAATCATATTCACTCTTCACTCATTGAATCAAAA
AGTAGAGCAGAGTGAACTNCATTCATCTTTTGTGACTTCTATGACACCTN
NNNNNCAGGAAAGCGGTTATTCTT
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