CK935676

Overview
NameCK935676
Unique NameCK935676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: DHB1_HUMAN (Estradiol 17-beta-dehydrogenase 1 OS=Homo sapiens GN=HSD17B1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 61/198 (30.81%), Postives = 93/198 (46.97%), Query Frame = 3
Query:   84 VLITGVSRGLGRALAQELAK------RGHTVIGCSRTQDKLTSLQSELPNPDHHL-FLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVA-KEVPDGMAIVALNPGVINTDMLTSCFGT 653
            VLITG S G+G  LA  LA       + +  +   +TQ +L      L  P   L  L +D+R + SV      V E  G  D++V NAG +     +  +  +   +V+D NV G   ML+ F+P M     G ++   S  G  G      YCASK+A+EGL  S+A   +P G+ +  +  G ++T  +    G+
Sbjct:    6 VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE--GRVDVLVCNAG-LGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGS 200          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: DHB12_XENTR (Estradiol 17-beta-dehydrogenase 12 OS=Xenopus tropicalis GN=hsd17b12 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 50/199 (25.13%), Postives = 97/199 (48.74%), Query Frame = 3
Query:   60 IGKSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPD----IIVNNAGTINKNNKIWDVSPE---EFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV-PDGMAIVALNPGVINTDM 632
            +G  + +  ++TG + G+G+A A+ELAKRG  ++  SR+ +KL  +  ++          +        E   R+   + G+ D    ++VNN G   ++ + +   P+     D +I+ N+  +  M R  +P M+   +G+I+N+SS  G     L+  Y A+K  V+  SR +  E    G+ + ++ P  + T +
Sbjct:   51 VGPRIGKWAVVTGATDGIGKAYAEELAKRGMNIVLISRSPEKLEEVAKQIKEKFKVETKIIAADFGKPTEIYGRI---ESGLRDLEIGVLVNNVGVSYEHPEYFLEIPDLENTLDKMININITSVCQMTRLVLPGMLGRGRGVILNISSASGMYPVPLLTVYSATKAFVDFFSRGLQAEYRSKGVTVQSVLPFYVATKL 246          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: DHB12_MOUSE (Estradiol 17-beta-dehydrogenase 12 OS=Mus musculus GN=Hsd17b12 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 53/202 (26.24%), Postives = 106/202 (52.48%), Query Frame = 3
Query:   60 IGKSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRS---NSSVEELARLVVEKKGVP----DIIVNNAGTINKNNKIWDVSPEEFDTV---IDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEVPD-GMAIVALNPGVINTDM 632
            +G  +    ++TG + G+G+A A+ELAKRG  ++  SR+QDKL  + + +         NV+ R+   + S++++   +  K G+      ++VNN G   +  + +   P+  +T+   I+ NV  +  + R  +P M+   +G+I+N+SS  G     L+  Y A+K  V+  S+ + +E    G+ + ++ P ++ T +
Sbjct:   45 VGPRLGEWAVVTGGTDGIGKAYAEELAKRGMKIVLISRSQDKLNQVSNNIKEK-----FNVETRTIAVDFSLDDIYDKI--KTGLSGLEIGVLVNNVGMSYEYPEYFLEIPDLDNTIKKLININVLSVCKVTRLVLPGMVERSKGVILNISSASGMLPVPLLTIYSATKAFVDFFSQCLHEEYKSKGIFVQSVMPYLVATKL 239          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: Y1570_MYCBO (Uncharacterized oxidoreductase Mb1570 OS=Mycobacterium bovis GN=Mb1570 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 53/193 (27.46%), Postives = 99/193 (51.30%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSEL----PNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAG-TINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSV-AKEVPDGMAIVALNPGVINTDMLT 638
            + VLITG S G+G A A+++A+ G TV+  +RT + L ++ +++     N         D+    ++  +A  V+   G  DI++NNAG +I ++ ++      ++   +  N  G   ++  FIP M     G IVN+SS   ++ A     Y ASK A++ L  ++ A+ V D +    ++  ++ T M++
Sbjct:   54 KVVLITGGSSGIGAAAAKKIAEAGGTVVLVARTLENLENVANDIRAIRGNGGTAHVYPCDLSDMDAIAVMADQVLGDLGGVDILINNAGRSIRRSLELSYDRIHDYQRTMQLNYLGAVQLILKFIPGMRERHFGHIVNVSSVGVQTRAPRFGAYIASKAALDSLCDALQAETVHDNVRFTTVHMALVRTPMIS 246          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: Y1543_MYCTU (Uncharacterized oxidoreductase Rv1543/MT1595 OS=Mycobacterium tuberculosis GN=Rv1543 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 53/193 (27.46%), Postives = 99/193 (51.30%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSEL----PNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAG-TINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSV-AKEVPDGMAIVALNPGVINTDMLT 638
            + VLITG S G+G A A+++A+ G TV+  +RT + L ++ +++     N         D+    ++  +A  V+   G  DI++NNAG +I ++ ++      ++   +  N  G   ++  FIP M     G IVN+SS   ++ A     Y ASK A++ L  ++ A+ V D +    ++  ++ T M++
Sbjct:   54 KVVLITGGSSGIGAAAAKKIAEAGGTVVLVARTLENLENVANDIRAIRGNGGTAHVYPCDLSDMDAIAVMADQVLGDLGGVDILINNAGRSIRRSLELSYDRIHDYQRTMQLNYLGAVQLILKFIPGMRERHFGHIVNVSSVGVQTRAPRFGAYIASKAALDSLCDALQAETVHDNVRFTTVHMALVRTPMIS 246          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: RDH8_BOVIN (Retinol dehydrogenase 8 OS=Bos taurus GN=RDH8 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 57/190 (30.00%), Postives = 93/190 (48.95%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELA---KRGHTVIGCSRTQDKLTSLQSELPNPDHHLFL--NVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEVPDGMAIVAL-NPGVINTD 629
            RTVLI+G S G+G  LA +LA   ++ + V+   R   K  +L++              +D+ S+ SV +    +  + G  D++VNNAG +     +  +S      V DTN  G   +++  +P M   +QG IV +SS  G  G      Y ASK+A+EG   S+A ++      ++L  PG + T+
Sbjct:    6 RTVLISGCSSGIGLELAVQLAHDPRQRYQVVATMRDLGKKGTLETAAGEALGQTLTVAQLDVCSDESVAQCLNCI--QGGEVDVLVNNAG-VGLVGPLEGLSLAAMQNVFDTNFFGAVRLVKAVLPSMKRRRQGHIVVVSSVMGLQGVVFNEVYAASKFAMEGFFESLAVQLLQFNIFISLVEPGPVVTE 192          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: RDH16_HUMAN (Retinol dehydrogenase 16 OS=Homo sapiens GN=RDH16 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 55/185 (29.73%), Postives = 91/185 (49.19%), Query Frame = 3
Query:   84 VLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLV---VEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEVP-DGMAIVALNPGVINT 626
            V ITG   G G+ LA++L  RG  V+    T+     L+ +    D    + +D+    SV   A+ V   V  KG+   +VNNAG          ++ ++F T++D N+ G+ ++    +PL +   +G +VN+SS  GR  +     YC SK+ VE  S S+ +E+   G+ +  + PG   T
Sbjct:   32 VFITGCDSGFGKLLARQLDARGLRVLAACLTEKGAEQLRGQ--TSDRLETVTLDVTKTESVAAAAQWVKECVRDKGLWG-LVNNAGISLPTAPNELLTKQDFVTILDVNLLGVIDVTLSLLPL-VRRARGRVVNVSSVMGRV-SLFGGGYCISKYGVEAFSDSLRRELSYFGVKVAMIEPGYFKT 211          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: RD10A_DANRE (Retinol dehydrogenase 10-A OS=Danio rerio GN=rdh10a PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 60/222 (27.03%), Postives = 99/222 (44.59%), Query Frame = 3
Query:   66 KSVSRTV-LITGVSRGLGRALAQELAKRGHTVI-----------------GCSRTQDKLTSLQS------ELPNPDHHLFLNV-DIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV----PDGMAIVALNPGVINTDMLTSC 644
            KSV+  V +ITG   GLGR  A+E A+R  T++                    R QD   S +       E+P     ++  V D+    SV   A  V  + G  D+++NNAG ++ ++ + +   E  +  +  N        + F+P M+ +  G IV ++S  G    A V  YCASK+   G   S++ E+     DG+ +  + P +++T M   C
Sbjct:   32 KSVAGQVCVITGAGGGLGRLFAKEFARRRATLVLWDINSHSNEETAEMVRQIYREQDNPMSKEGAVGGVEEVPPFQPQVYTYVLDVGKRESVYSTAEKVRREVGEVDLLINNAGVVSGHHLL-ECPDELIERTMVVNCHAHFWTTKAFLPKMLEMNHGHIVTVASSLGLFSTAGVEDYCASKFGAIGFHESLSHEIQASEKDGIKMTLVCPYLVDTGMFRGC 252          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: PGDH_RAT (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Rattus norvegicus GN=Hpgd PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 57/195 (29.23%), Postives = 89/195 (45.64%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCS---RTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPE-EFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKE---VPDGMAIVALNPGVINTDMLTS 641
            +  L+TG ++G+G+A  + L   G  V        T  K  +   E   P   LF+  D+     + +  R VV+  G  DI+VNNAG  N+ N  W+ + +    +VI     G+  M +         + GII+N+SS  G    A    YCASK  + G +RS A     +  G+ +  + PG + T +L S
Sbjct:    6 KVALVTGAAQGIGKAFTEALLLHGAKVALVDWNLETGVKCKAALDEQFEPQKTLFIQCDVADQKQLRDTFRKVVDHFGRLDILVNNAGVNNEKN--WEQTLQINLVSVISGTYLGLDYMSK-----QNGGEGGIIINISSIAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVKTPILES 193          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: NYC1_ARATH (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Arabidopsis thaliana GN=NYC1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 58/209 (27.75%), Postives = 94/209 (44.98%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNV------------------DIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMI-PIKQGIIVNM-SSGWGRSGAALVAPYCASKWAVEGLSRSVAKE-VPDGMAIVALNPGVINTDMLTS 641
            R V+ITG +RGLG+ALA+E    G  VI  SR+ + +     EL      +  N                   D+     VE+L+   V++ G  +I +NNAGT      + + + E+   ++ TN+ G     R  + +M      G I NM  +G G S   L A Y ++K  +     S+ KE     + +   +PG++ T++L S
Sbjct:  162 RNVVITGSTRGLGKALAREFLLSGDRVIVTSRSSESVDMTVKELEQNLKEIMSNASESARKKLSDAKVVGIACDVCKPEDVEKLSNFAVKELGSINIWINNAGTNKGFRPLLEFTEEDITQIVSTNLIGSILCTRGAMDVMSRQHSGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQFHGSIVKESQKTNVGLHTASPGMVLTELLLS 370          
The following BLAST results are available for this feature:
BLAST of CK935676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 245
Match NameE-valueIdentityDescription
DHB1_HUMAN4.519e-1130.81Estradiol 17-beta-dehydrogenase 1 OS=Homo sapiens ... [more]
DHB12_XENTR4.519e-1125.13Estradiol 17-beta-dehydrogenase 12 OS=Xenopus trop... [more]
DHB12_MOUSE4.519e-1126.24Estradiol 17-beta-dehydrogenase 12 OS=Mus musculus... [more]
Y1570_MYCBO5.903e-1127.46Uncharacterized oxidoreductase Mb1570 OS=Mycobacte... [more]
Y1543_MYCTU5.903e-1127.46Uncharacterized oxidoreductase Rv1543/MT1595 OS=My... [more]
RDH8_BOVIN5.903e-1130.00Retinol dehydrogenase 8 OS=Bos taurus GN=RDH8 PE=1... [more]
RDH16_HUMAN5.903e-1129.73Retinol dehydrogenase 16 OS=Homo sapiens GN=RDH16 ... [more]
RD10A_DANRE5.903e-1127.03Retinol dehydrogenase 10-A OS=Danio rerio GN=rdh10... [more]
PGDH_RAT5.903e-1129.2315-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ra... [more]
NYC1_ARATH5.903e-1127.75Probable chlorophyll(ide) b reductase NYC1, chloro... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935676 ID=CK935676; Name=CK935676; organism=Citrus sinensis; type=EST; length=924bp
GGGGGAGAGGGAGGGAAATAACAATAACAACGATGGCAGCAACGACGCCG
TTTAACGGGATAGGGAAGAGCGTATCGCGAACAGTACTGATAACGGGAGT
GAGCAGAGGATTAGGGCGAGCCCTAGCTCAAGAGTTGGCCAAGCGCGGCC
ACACCGTGATCGGCTGCTCCCGCACTCAGGATAAGCTCACCTCCCTCCAA
TCAGAACTCCCTAATCCCGACCACCACCTCTTCCTCAATGTCGACATCAG
GTCAAATAGCAGTGTTGAAGAACTAGCACGTCTTGTCGTGGAGAAGAAAG
GCGTTCCTGATATTATAGTAAACAATGCAGGTACTATTAATAAAAATAAC
AAGATTTGGGATGTTTCGCCAGAAGAATTCGACACTGTTATTGATACTAA
TGTGAAAGGCATAGCAAATATGTTGCGTCACTTCATTCCTTTGATGATTC
CAATCAAGCAAGGGATTATCGTTAATATGTCTTCTGGTTGGGGAAGATCT
GGTGCTGCCCTGGTAGCACCTTATTGTGCTTCAAAATGGGCAGTTGAAGG
GTTGTCCAGATCAGTGGCAAAGGAGGTGCCTGATGGGATGGCAATTGTTG
CTTTAAATCCTGGTGTTATTAACACTGACATGCTTACGTCCTGCTTTGGC
ACTTCTGCTGCATCATACCAGCCACCTGATGCATGGGCTTTGAAGGCAGC
TACGACGATACTCAATCTTACAGGAGCAGACAATGGTGCATCTCTTACGG
TGTGACAGAAGCTTTTACATTCAAAATGCTGGGATCCAGCTAGGCGAGCG
TAACAGTTCACTGATAAAATCATATTCACTCTTCACTCATTGAATCAAAA
AGTAGAGCAGAGTGAACTNCATTCATCTTTTGTGACTTCTATGACACCTN
NNNNNCAGGAAAGCGGTTATTCTT
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