CK935676

Overview
NameCK935676
Unique NameCK935676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: KDSR_MOUSE (3-ketodihydrosphingosine reductase OS=Mus musculus GN=Kdsr PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 50/171 (29.24%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   84 VLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHH-----LFLNVDIRSN-SSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV 578
            V++TG S G+G+ +A E  K+G  +   +R +DKL   + ++     +     L ++VD+  + + VE + +   EK G  D++VN AGT + + K  ++    F+ ++  N  G     R  I  M   + G IV +SS  G+ G      Y +SK+A+ GL+ ++  EV
Sbjct:   35 VVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDIEKHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGT-SMSGKFEELEVSSFEKLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEV 204          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: HSDL2_MOUSE (Hydroxysteroid dehydrogenase-like protein 2 OS=Mus musculus GN=Hsdl2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 56/197 (28.43%), Postives = 87/197 (44.16%), Query Frame = 3
Query:   63 GKSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHH--------LFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSG------WGRSGAALVAPYCASKWAVEGLSRSVAKEVPDGMAIVALNP 611
            GK    TV ITG SRG+G+A+A + AK G  ++  ++T  K   L   +              L   VD+R    +       VEK G  DI+VNNA  I+  N + D   +  D +++ N +G     +  IP +   K G I+N+S        W +   A    Y  +K+ +      +A+E    +A+ AL P
Sbjct:    6 GKLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTTQKHPKLLGTIYTAAEEIEAAGGTALPCVVDVRDEQQINSAVEKAVEKFGGIDILVNNASAISLTNTL-DTPTKRVDLMMNVNTRGTYLTSKACIPFLKKSKVGHILNLSPPLNLNPLWFKQHCA----YTIAKYGMSMCVLGMAEEFRGEIAVNALWP 197          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: DHG1_BACME (Glucose 1-dehydrogenase 1 OS=Bacillus megaterium GN=gdhI PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 53/190 (27.89%), Postives = 99/190 (52.11%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELA-KRGHTVIGCSRTQDKLTSLQSELPN-PDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGI----ANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKE-VPDGMAIVALNPGVINT 626
            + V+ITG S GLG+A+A   A ++   V+     +++  S+  E+       + +  D+   S V  L +  +++ G  D+++NNAG  N  +   ++S  +++ VIDTN+ G        +++F+   I   +G ++NMSS   +    L   Y ASK  ++ ++ ++A E  P G+ +  + PG INT
Sbjct:    8 KVVVITGSSTGLGKAMAIRFATEKAKVVVNYRSKEEEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSSIKEFGKLDVMINNAGMENPVSS-HEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDI---KGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINT 193          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: DHB13_HUMAN (17-beta hydroxysteroid dehydrogenase 13 OS=Homo sapiens GN=HSD17B13 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 54/194 (27.84%), Postives = 88/194 (45.36%), Query Frame = 3
Query:   66 KSVS-RTVLITGVSRGLGRALAQELAKRGHTVI--GCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV----PDGMAIVALNPGVINT 626
            KSV+   VLITG   G+GR    E AKR   ++    ++   + T+ +        H ++ VD  +   +      V ++ G   I+VNNAGT+   + +     EE     + N+ G   + +  +P M+    G IV ++S  G  G   + PYC+SK+A  G  R +  E+      G+    L P  +NT
Sbjct:   32 KSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINKRGVEETAAECRKLGVTAHAYV-VDCSNREEIYRSLNQVKKEVGDVTIVVNNAGTVYPADLL-STKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQALGKTGIKTSCLCPVFVNT 223          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: DHB12_MACFA (Estradiol 17-beta-dehydrogenase 12 OS=Macaca fascicularis GN=HSD17B12 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 52/183 (28.42%), Postives = 96/183 (52.46%), Query Frame = 3
Query:   57 GIGKSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRS---NSSVEELARLVVEKKGVP----DIIVNNAGTINKNNKIWDVSPEEFDTV---IDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKE 575
            G+G  +    ++TG + G+G++ A+ELAKRG  V+  SR+QDKL  + SE+          V+ R+   + ++E++   +  K G+      I+VNN G   +  + +   P+  + +   I+ N+  +  M +  +P M+   +G I+N+SSG G     L+  Y A+K  V+  S+ + +E
Sbjct:   44 GVGPGLGEWAVVTGGTDGIGKSYAEELAKRGMKVVLISRSQDKLDQVSSEIKEK-----FKVETRTIAVDFTLEDIYDKI--KTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMFPVPLLTIYSATKTFVDFFSQCLHEE 219          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: BPHB_COMTE (Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=Comamonas testosteroni GN=bphB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 53/196 (27.04%), Postives = 94/196 (47.96%), Query Frame = 3
Query:   66 KSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEE-----FDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSG--WGRSGAALVAPYCASKWAVEGLSRSVAKEVPDGMAIVALNPGVINTDM 632
            K      LITG + GLGRAL       G  V    ++ ++L  L  E+ +  + + +  D+RS    +  A   +   G  D ++ NAG  + +  + D+ PE+     FD +   NVKG  + ++  +P ++  +  ++  +S+   +   G  L   Y A+K AV GL R +A E+   + +  + PG +NTD+
Sbjct:    2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLREL--EVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADL-PEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPNGGGPL---YTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDL 191          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: YXJF_BACSU (Uncharacterized oxidoreductase yxjF OS=Bacillus subtilis GN=yxjF PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 51/188 (27.13%), Postives = 93/188 (49.47%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLF-LNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKE-VPDGMAIVALNPGVINTDML 635
            +  L+TG + G+G  +A+E A+ G +VI      +      S+L         +  D+   + V +   ++ ++ G  DI+VNNAG I     I +   + F+ +I   +      ++H  P+M   + G I+N++S  G  G A  + Y ++K  V GL++  A E  P G+ + AL PG ++T ++
Sbjct:    4 QVALVTGAAGGIGFEIAREFAREGASVIVSDLRPEACEKAASKLAEEGFDAAAIPYDVTKEAQVADTVNVIQKQYGRLDILVNNAG-IQHVAPIEEFPTDTFEQLIKVMLTAPFIAMKHVFPIMKKQQFGRIINIASVNGLVGFAGKSAYNSAKHGVIGLTKVGALEGAPHGITVNALCPGYVDTQLV 190          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: Y019_THEMA (Uncharacterized oxidoreductase TM_0019 OS=Thermotoga maritima GN=TM_0019 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 51/185 (27.57%), Postives = 92/185 (49.73%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHL-FLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEVPD-GMAIVALNPGVINT 626
            +  ++TG  +G+G A+AQ  A+ G  V+     ++     +  L      + F+  D+   +SV+ + R  VE  G  D++VNNA  ++  + I++   EE++ VI  N+ G     R+    MI    G+I+N++S           PY ASK  +  L+ S+A  +    + +V+++PG I T
Sbjct:    5 KVAVVTGGGQGIGAAIAQLFAENGMKVVIAEIDEEAGVEREEMLRERGLDVTFVKTDVADENSVKNMVRKTVEIYGGVDVLVNNAAVMSVKS-IFERPLEEWERVIRVNLTGPYICSRYCAEEMIKRGGGVIINIASTRAFQSEPDTEPYSASKGGLVALTHSLAVSLSRYHIRVVSISPGWIET 188          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: STDH4_CAEEL (Putative steroid dehydrogenase 4 OS=Caenorhabditis elegans GN=stdh-4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 57/218 (26.15%), Postives = 105/218 (48.17%), Query Frame = 3
Query:   87 LITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIR------SNSSVEELARLVVEKKGVP-DIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEVP-DGMAIVALNPGVINTDMLTSCFGTSAASYQPPDAWALKAATTILN 716
            ++TG + G+GR+ A +LA+RG  +   SRT+ KL   + ++ N     + ++++R      +  S E+  RL+     V   I++NN G    N ++        DT+ +     I  +    +P M+  K GIIVN+ S  G    A  + Y A+K  +E  +  + KE   +G+    + P +++T+M+ +    S+      D++A  +  TI N
Sbjct:   57 VVTGATDGIGRSYALDLARRGFNIFLISRTKSKLVKTKKQILNK----YSDIEVRYAICDFTRVSYEDYKRLLHSLNEVDIGILINNVGMCFDNPEVLHRVEGGIDTLTNVINVNILPLTAGILPQMMARKSGIIVNIGSAAGSIHMAKWSVYSATKKYIEWFTSILQKEYENEGIICQTITPLLVSTNMIKN--PLSSIFCPNSDSFAKSSLNTIGN 268          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 59/206 (28.64%), Postives = 97/206 (47.09%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDK----LTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKG---IANMLRHFIPLMIPIKQGIIVNMSS-------------GWGRSGAALVAPYCASKWAVEGLSRSVAKEVP-DGMAIVALNPGVINTDM 632
            +TV++TG + G+G+  A ELAKRG  VI   R  +K       ++ E  NP       +D+ S  S+ E AR V++++   DI+VNNA  +   +  W  + + F+     N  G   + N+L   +    P +   I+N+SS              W        A YC SK AV   ++ ++  +   G+ + AL+PGV  T++
Sbjct:   39 KTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIRGETLNPRVRA-ERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPH--W-TTEDGFEMQFGVNYLGHFLLTNLLLDKLKASAPSR---IINLSSLAHVAGHIDFEDLNWQMKKYDTKAAYCQSKLAVVLFTKELSHRLQGSGVTVNALHPGVARTEL 237          
The following BLAST results are available for this feature:
BLAST of CK935676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 245
Match NameE-valueIdentityDescription
KDSR_MOUSE5.903e-1129.243-ketodihydrosphingosine reductase OS=Mus musculus... [more]
HSDL2_MOUSE5.903e-1128.43Hydroxysteroid dehydrogenase-like protein 2 OS=Mus... [more]
DHG1_BACME5.903e-1127.89Glucose 1-dehydrogenase 1 OS=Bacillus megaterium G... [more]
DHB13_HUMAN5.903e-1127.8417-beta hydroxysteroid dehydrogenase 13 OS=Homo sa... [more]
DHB12_MACFA5.903e-1128.42Estradiol 17-beta-dehydrogenase 12 OS=Macaca fasci... [more]
BPHB_COMTE5.903e-1127.04Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=... [more]
YXJF_BACSU7.709e-1127.13Uncharacterized oxidoreductase yxjF OS=Bacillus su... [more]
Y019_THEMA7.709e-1127.57Uncharacterized oxidoreductase TM_0019 OS=Thermoto... [more]
STDH4_CAEEL7.709e-1126.15Putative steroid dehydrogenase 4 OS=Caenorhabditis... [more]
RDH13_MOUSE7.709e-1128.64Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935676 ID=CK935676; Name=CK935676; organism=Citrus sinensis; type=EST; length=924bp
GGGGGAGAGGGAGGGAAATAACAATAACAACGATGGCAGCAACGACGCCG
TTTAACGGGATAGGGAAGAGCGTATCGCGAACAGTACTGATAACGGGAGT
GAGCAGAGGATTAGGGCGAGCCCTAGCTCAAGAGTTGGCCAAGCGCGGCC
ACACCGTGATCGGCTGCTCCCGCACTCAGGATAAGCTCACCTCCCTCCAA
TCAGAACTCCCTAATCCCGACCACCACCTCTTCCTCAATGTCGACATCAG
GTCAAATAGCAGTGTTGAAGAACTAGCACGTCTTGTCGTGGAGAAGAAAG
GCGTTCCTGATATTATAGTAAACAATGCAGGTACTATTAATAAAAATAAC
AAGATTTGGGATGTTTCGCCAGAAGAATTCGACACTGTTATTGATACTAA
TGTGAAAGGCATAGCAAATATGTTGCGTCACTTCATTCCTTTGATGATTC
CAATCAAGCAAGGGATTATCGTTAATATGTCTTCTGGTTGGGGAAGATCT
GGTGCTGCCCTGGTAGCACCTTATTGTGCTTCAAAATGGGCAGTTGAAGG
GTTGTCCAGATCAGTGGCAAAGGAGGTGCCTGATGGGATGGCAATTGTTG
CTTTAAATCCTGGTGTTATTAACACTGACATGCTTACGTCCTGCTTTGGC
ACTTCTGCTGCATCATACCAGCCACCTGATGCATGGGCTTTGAAGGCAGC
TACGACGATACTCAATCTTACAGGAGCAGACAATGGTGCATCTCTTACGG
TGTGACAGAAGCTTTTACATTCAAAATGCTGGGATCCAGCTAGGCGAGCG
TAACAGTTCACTGATAAAATCATATTCACTCTTCACTCATTGAATCAAAA
AGTAGAGCAGAGTGAACTNCATTCATCTTTTGTGACTTCTATGACACCTN
NNNNNCAGGAAAGCGGTTATTCTT
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