CK935676

Overview
NameCK935676
Unique NameCK935676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: KDSR_HUMAN (3-ketodihydrosphingosine reductase OS=Homo sapiens GN=KDSR PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 52/171 (30.41%), Postives = 87/171 (50.88%), Query Frame = 3
Query:   84 VLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELP-----NPDHHLFLNVDIRSN-SSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV 578
            V++TG S G+G+ +A E  K+G  +   +R +DKL   + E+      +    L ++VD+  + + VE + +   EK G  D++VN AG +  + K  D+    F+ ++  N  G     R  I  M   + G IV +SS  G+ G      Y ASK+A+ GL+ ++  EV
Sbjct:   35 VVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEMHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAG-MAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSASKFAIRGLAEALQMEV 204          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: DHB11_MOUSE (Estradiol 17-beta-dehydrogenase 11 OS=Mus musculus GN=Hsd17b11 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 58/202 (28.71%), Postives = 89/202 (44.06%), Query Frame = 3
Query:   66 KSVS-RTVLITGVSRGLGRALAQELAKRGHTVI-------GCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEVP----DGMAIVALNPGVINTDML 635
            KSV+   VLITG   G+GR  A E AK    ++       G   T  K   L ++      H F+ VD      +   A+ V E+ G   I+VNNAG +   +      P+  +   + NV       + F+P+M+    G IV ++S  G +    +  YC+SK+A  G  R++  E+      G+    L P  INT  +
Sbjct:   32 KSVAGEIVLITGAGHGIGRLTAYEFAKLNTKLVLWDINKNGIEETAAKCRKLGAQA-----HPFV-VDCSQREEIYSAAKKVKEEVGDVSILVNNAGVVYTADLFATQDPQ-IEKTFEVNVLAHFWTTKAFLPVMMKNNHGHIVTVASAAGHTVVPFLLAYCSSKFAAVGFHRALTDELAALGRTGVRTSCLCPNFINTGFI 226          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: DCXR_RAT (L-xylulose reductase OS=Rattus norvegicus GN=Dcxr PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 55/190 (28.95%), Postives = 92/190 (48.42%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIAN----MLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV-PDGMAIVALNPGVINTDM 632
            R  L+TG  +G+GR+    L   G  V+  SRT++ L SL  E P  +    + VD+    + E+     +   G  D++VNNA  +       +V+ E  DT  + N + +      + R  I   +P   G IVN+SS   +        YC++K A++ L++ +A E+ P  + + A+NP V+ T M
Sbjct:    8 RRALVTGAGKGIGRSTVLALQAAGAQVVAVSRTREDLDSLVRECPGVEP---VCVDLADWEATEQ----ALSNVGPVDLLVNNA-AVATLQPFLEVTKEACDTSFNVNFRAVVQVSQIVARGMIARGVP---GAIVNVSSQASQRALTNHTVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTPM 186          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: ACR1_ACIBI (Fatty acyl-CoA reductase OS=Acinetobacter baylyi GN=acr1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 48/190 (25.26%), Postives = 99/190 (52.11%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFL-NVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKN--NKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV-PDGMAIVALNPGVINTDML 635
            +  LITG S G+G  +A+ +A  G  V+  +RTQ+ L  +++ +        +   D+   +++++L++ ++      D ++NNAG   +   ++ +D    +F+  +  N  G   ++ + +P MI  K G I+N+SS    + A   + Y ASK A++  SR ++ EV    ++I ++   ++ T M+
Sbjct:   16 KVALITGASSGIGLTIAKRIAAAGAHVLLVARTQETLEEVKAAIEQQGGQASIFPCDLTDMNAIDQLSQQIMASVDHVDFLINNAGRSIRRAVHESFDRF-HDFERTMQLNYFGAVRLVLNLLPHMIKRKNGQIINISSIGVLANATRFSAYVASKAALDAFSRCLSAEVLKHKISITSIYMPLVRTPMI 204          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: ACR1_ACIAD (Fatty acyl-CoA reductase OS=Acinetobacter sp. (strain ADP1) GN=acr1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 48/190 (25.26%), Postives = 99/190 (52.11%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFL-NVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKN--NKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV-PDGMAIVALNPGVINTDML 635
            +  LITG S G+G  +A+ +A  G  V+  +RTQ+ L  +++ +        +   D+   +++++L++ ++      D ++NNAG   +   ++ +D    +F+  +  N  G   ++ + +P MI  K G I+N+SS    + A   + Y ASK A++  SR ++ EV    ++I ++   ++ T M+
Sbjct:   24 KVALITGASSGIGLTIAKRIAAAGAHVLLVARTQETLEEVKAAIEQQGGQASIFPCDLTDMNAIDQLSQQIMASVDHVDFLINNAGRSIRRAVHESFDRF-HDFERTMQLNYFGAVRLVLNLLPHMIKRKNGQIINISSIGVLANATRFSAYVASKAALDAFSRCLSAEVLKHKISITSIYMPLVRTPMI 212          
The following BLAST results are available for this feature:
BLAST of CK935676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 245
Match NameE-valueIdentityDescription
KDSR_HUMAN7.709e-1130.413-ketodihydrosphingosine reductase OS=Homo sapiens... [more]
DHB11_MOUSE7.709e-1128.71Estradiol 17-beta-dehydrogenase 11 OS=Mus musculus... [more]
DCXR_RAT7.709e-1128.95L-xylulose reductase OS=Rattus norvegicus GN=Dcxr ... [more]
ACR1_ACIBI7.709e-1125.26Fatty acyl-CoA reductase OS=Acinetobacter baylyi G... [more]
ACR1_ACIAD7.709e-1125.26Fatty acyl-CoA reductase OS=Acinetobacter sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935676 ID=CK935676; Name=CK935676; organism=Citrus sinensis; type=EST; length=924bp
GGGGGAGAGGGAGGGAAATAACAATAACAACGATGGCAGCAACGACGCCG
TTTAACGGGATAGGGAAGAGCGTATCGCGAACAGTACTGATAACGGGAGT
GAGCAGAGGATTAGGGCGAGCCCTAGCTCAAGAGTTGGCCAAGCGCGGCC
ACACCGTGATCGGCTGCTCCCGCACTCAGGATAAGCTCACCTCCCTCCAA
TCAGAACTCCCTAATCCCGACCACCACCTCTTCCTCAATGTCGACATCAG
GTCAAATAGCAGTGTTGAAGAACTAGCACGTCTTGTCGTGGAGAAGAAAG
GCGTTCCTGATATTATAGTAAACAATGCAGGTACTATTAATAAAAATAAC
AAGATTTGGGATGTTTCGCCAGAAGAATTCGACACTGTTATTGATACTAA
TGTGAAAGGCATAGCAAATATGTTGCGTCACTTCATTCCTTTGATGATTC
CAATCAAGCAAGGGATTATCGTTAATATGTCTTCTGGTTGGGGAAGATCT
GGTGCTGCCCTGGTAGCACCTTATTGTGCTTCAAAATGGGCAGTTGAAGG
GTTGTCCAGATCAGTGGCAAAGGAGGTGCCTGATGGGATGGCAATTGTTG
CTTTAAATCCTGGTGTTATTAACACTGACATGCTTACGTCCTGCTTTGGC
ACTTCTGCTGCATCATACCAGCCACCTGATGCATGGGCTTTGAAGGCAGC
TACGACGATACTCAATCTTACAGGAGCAGACAATGGTGCATCTCTTACGG
TGTGACAGAAGCTTTTACATTCAAAATGCTGGGATCCAGCTAGGCGAGCG
TAACAGTTCACTGATAAAATCATATTCACTCTTCACTCATTGAATCAAAA
AGTAGAGCAGAGTGAACTNCATTCATCTTTTGTGACTTCTATGACACCTN
NNNNNCAGGAAAGCGGTTATTCTT
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