CK935702

Overview
NameCK935702
Unique NameCK935702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_SYNR3 (Peptide methionine sulfoxide reductase msrB OS=Synechococcus sp. (strain RCC307) GN=msrB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.496e-27
Identity = 65/128 (50.78%), Postives = 79/128 (61.72%), Query Frame = 1
Query:   61 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 435
            D V+ +E +WR+ L+PEQFRI R+ GTE   TG Y     DG Y C  CG  L++S  KFDSG GWP+F+EG+ P AI    D      RTEI CA C  HLGHVF+     TPT  R+CVNS S+ F
Sbjct:    7 DPVEASENDWRSKLTPEQFRITREGGTERAFTGAYWNHKGDGMYRCICCGAELFRSDRKFDSGTGWPSFWEGVNPEAIRTIQDVSHGMVRTEIRCAKCDSHLGHVFQDS--PTPTGLRYCVNSASLDF 132          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_PSEP1 (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=msrB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.496e-27
Identity = 60/130 (46.15%), Postives = 80/130 (61.54%), Query Frame = 1
Query:   67 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAIN---RSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            ++KT +EWR++L PEQ+++ R KGTE   +G+YN    DG Y+C  CG AL+ + TKFD+GCGWP+FY  +  +     R       RTE+TCA C  HLGHVF       PT  R+C+NSV I   P D
Sbjct:    4 IEKTLDEWRSMLDPEQYQVCRLKGTERPFSGKYNSERRDGIYHCICCGLALFDAQTKFDAGCGWPSFYAPIEDSAMIEIRDTSHGMIRTEVTCARCDAHLGHVFPDG--PPPTGLRYCINSVCIDLRPRD 131          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_METMA (Peptide methionine sulfoxide reductase msrB OS=Methanosarcina mazei GN=msrB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.954e-27
Identity = 60/132 (45.45%), Postives = 86/132 (65.15%), Query Frame = 1
Query:   55 AADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGE--YNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 435
            A + ++K+EE+W+++L+PEQ+ +LRQKGTE   +G   YNK    G Y CA CG  L+ S TKF+SG GWP+FY+ +     R  + +    +R E+ C+ CG HLGHVF  E    PT +R+C+NSVS+ F
Sbjct:    2 AQNKIEKSEEDWKSVLTPEQYHVLRQKGTERPFSGNLYYNK--EKGIYTCAACGQELFSSDTKFESGTGWPSFYDVISSDRVRLHEDNSYFMKRIEVVCSRCGSHLGHVF--EDGPEPTGQRYCINSVSLGF 129          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_METBF (Peptide methionine sulfoxide reductase msrB OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=msrB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.552e-27
Identity = 62/132 (46.97%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   55 AADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGE--YNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 435
            A  +V+K+EEEW+ +L+PEQ+ +LRQKGTE   +G   YNK    G Y CA CG  L+ S TKF+SG GWP+FY+ +     R  +       R E+ C+ CG HLGHVF  E    PT +R+C+NSVS+ F
Sbjct:    2 AQKAVEKSEEEWKKVLTPEQYHVLRQKGTERPFSGNLYYNK--EKGVYTCAACGQELFSSDTKFESGTGWPSFYDVISSDRVRLKEDTSYFMNRIEVVCSRCGSHLGHVF--EDGPAPTGKRYCINSVSLNF 129          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_PSEPW (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas putida (strain W619) GN=msrB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27
Identity = 62/130 (47.69%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   67 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            + KT EEWRA+L PEQ+++ R KGTE   TG+YN     G Y+C  C   L+ S TKFDSGCGWP+FY  +  +     R       RTE+TCA C  HLGHVF       PT  R+C+NSV + F P D
Sbjct:    4 IDKTLEEWRAMLDPEQYQVCRLKGTERPFTGKYNSEKRAGTYHCICCDLPLFDSNTKFDSGCGWPSFYAPIEDSAMIETRDTSHGMIRTEVTCAQCDAHLGHVFPDG--PPPTGLRYCINSVCLDFKPRD 131          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_PSE14 (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=msrB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27
Identity = 59/130 (45.38%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   61 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 441
            D +QKT EEW+ +L P Q+++ R KGTE   +G+YN+   +G Y+C  C   L+ S TKFDSGCGWP+FY  L G+     R       RTE+ CA C  HLGHVF       PT  R+C+NSV +  +P
Sbjct:    2 DKLQKTLEEWKEMLDPAQYQVCRLKGTERPFSGKYNETKTEGVYHCICCNEPLFDSTTKFDSGCGWPSFYAPLEGSAVVEVRDVSHGMIRTEVVCAKCDAHLGHVFPDG--PPPTGLRYCINSVCLDLVP 129          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_ACIAD (Peptide methionine sulfoxide reductase msrB OS=Acinetobacter sp. (strain ADP1) GN=msrB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27
Identity = 61/125 (48.80%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   67 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGR---RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 432
            + KTE EW+  LSPE++RI RQKGTEP  TG+Y      G Y C  CGT L+ S++K+DSGCGWP+FY+ +        D       RTEI C  C  HLGHVF  E    PT  R+CVNS S++
Sbjct:    4 LNKTEREWQRELSPEEYRITRQKGTEPAFTGQYWNTKQSGTYVCRCCGTELFSSISKYDSGCGWPSFYKPINTTAIEEHDDFSHGMVRTEIVCHHCDAHLGHVF--EDGPQPTGLRYCVNSASLQ 126          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_PSESM (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas syringae pv. tomato GN=msrB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.354e-27
Identity = 60/130 (46.15%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   61 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 441
            D +QKT EEW+ +L P Q+ + R KGTE   +G+YN     G Y+C  C  AL+ S TKFDSGCGWP+FY  L G+     R       RTE+ CA C  HLGHVF       PT  R+C+NSV ++ +P
Sbjct:    2 DKLQKTLEEWKEMLDPAQYSVCRLKGTERPFSGKYNDTKTAGVYHCICCNEALFDSTTKFDSGCGWPSFYAPLEGSAVVEVRDVSHGMIRTEVVCARCDAHLGHVFPDG--PPPTGLRYCINSVCLELVP 129          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_CHRSD (Peptide methionine sulfoxide reductase msrB OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=msrB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.354e-27
Identity = 61/133 (45.86%), Postives = 83/133 (62.41%), Query Frame = 1
Query:   58 ADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGA-INRSPDPDG--RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            ++ VQK+E EW+  L+PEQ+R+ R+KGTE   TG+Y      G Y+C  CG  L+++  KFD+GCGWP+F   L  A I    D     RR E+TC  C  HLGHVF  +G +  T  R+C+NSVS+ F PG+
Sbjct:    2 SEKVQKSEHEWQQQLTPEQYRVTREKGTERPFTGDYQVSDEQGIYHCVCCGAPLFENEHKFDAGCGWPSFDRPLADASIEEHLDTSHGMRRIEVTCRRCDSHLGHVFP-DGPQDTTGLRYCINSVSLDFHPGE 133          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_PSEPK (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas putida (strain KT2440) GN=msrB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 59/130 (45.38%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   67 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAIN---RSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            ++KT +EWR++L PEQ+++ R KGTE   +G+YN    DG Y+C  CG  L+ + TKFD+GCGWP+FY  +  +     R       RTE+TCA C  HLGHVF       PT  R+C+NSV I   P D
Sbjct:    4 IEKTLDEWRSMLDPEQYQVCRLKGTERPFSGKYNSERRDGIYHCICCGLPLFDAQTKFDAGCGWPSFYAPIEDSAMIEIRDTSHGMIRTEVTCARCDAHLGHVFPDG--PPPTGLRYCINSVCIDLRPRD 131          
The following BLAST results are available for this feature:
BLAST of CK935702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
MSRB_SYNR31.496e-2750.78Peptide methionine sulfoxide reductase msrB OS=Syn... [more]
MSRB_PSEP11.496e-2746.15Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_METMA1.954e-2745.45Peptide methionine sulfoxide reductase msrB OS=Met... [more]
MSRB_METBF2.552e-2746.97Peptide methionine sulfoxide reductase msrB OS=Met... [more]
MSRB_PSEPW3.334e-2747.69Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_PSE143.334e-2745.38Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_ACIAD3.334e-2748.80Peptide methionine sulfoxide reductase msrB OS=Aci... [more]
MSRB_PSESM4.354e-2746.15Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_CHRSD4.354e-2745.86Peptide methionine sulfoxide reductase msrB OS=Chr... [more]
MSRB_PSEPK5.686e-2745.38Peptide methionine sulfoxide reductase msrB OS=Pse... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_E09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935702 ID=CK935702; Name=CK935702; organism=Citrus sinensis; type=EST; length=657bp
GCGGGGAAACACACCGCTGGTAAAAAAAGATTGNNNCCAAACCCCATNNN
TGCAGCAGCAGATTCCGTTCAGAAAACCGAGGAAGAATGGCGGGCCATTC
TCTCCCCCGAGCAGTTTAGGATTCTACGCCAGAAAGGAACCGAGCCGCGA
GGAACTGGGGAGTACAACAAGTTGTATGCGGATGGGTTTTACAACTGTGC
TGGCTGTGGAACTGCGCTTTACAAGTCTGTTACCAAATTCGATTCTGGAT
GTGGGTGGCCAGCTTTCTATGAAGGTCTTCCTGGAGCCATAAATCGCTCC
CCTGATCCTGATGGAAGGAGAACCGAGATAACTTGTGCTGCTTGCGGGGG
TCACTTGGGTCACGTCTTCAAAGGGGAGGGATTCAAAACGCCTACAGATG
AACGCCACTGTGTCAATAGTGTTTCAATTAAGTTTATTCCAGGTGATGCT
CCTGCTTCATCATGAAGAATGTAAGACTGTCATGGGGTTGTTGAATAAGA
TTTGACTGTTTGTCACTTCTGCCAATTGTTTTTGGCTTTAATGTCCTAGA
CATGGTGTTGTTTGTATAATTATTACGCGGCCAATATTAGCCTATGCCAT
AGTATAAACCACTTTGTTTGGTTTGCAGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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