CK935702

Overview
NameCK935702
Unique NameCK935702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_YERP3 (Peptide methionine sulfoxide reductase msrB OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=msrB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.127e-17
Identity = 48/116 (41.38%), Postives = 63/116 (54.31%), Query Frame = 1
Query:  100 LSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFI 438
            LS  Q  + +++GTE   TG+      DG Y C  C   L+ S +KFDSGCGWP+FY+ +     R  D    +  R EI C  C  HLGHVF       PT ER+C+NS S+ F+
Sbjct:   14 LSDIQRYVTQERGTEAPFTGKLLHNKRDGVYQCLCCHQPLFISESKFDSGCGWPSFYQPIDADSIRYIDDYSHNMHRIEIRCGNCDAHLGHVFPDG--PQPTGERYCINSASLNFV 127          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB2_RHIME (Peptide methionine sulfoxide reductase msrB 2 OS=Rhizobium meliloti GN=msrB2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.127e-17
Identity = 53/127 (41.73%), Postives = 72/127 (56.69%), Query Frame = 1
Query:   70 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 441
            +KT+EE    L+PEQ+R+ +Q GTE   TGEY      G Y     G  L+ S  KFDSGCGWP+F + + P  +N   D      RTE+  A    HLGHVF  +G +     R+C+NS +++FIP
Sbjct:    4 RKTDEEVSK-LTPEQYRVTQQNGTERPFTGEYTDNKRPGIYVDIVSGEPLFASADKFDSGCGWPSFTKPIVPANVNELRDNSHGMIRTEVRSAHGDSHLGHVFP-DGPQDRGGLRYCINSAALRFIP 128          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_XYLFA (Peptide methionine sulfoxide reductase msrB OS=Xylella fastidiosa GN=msrB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.967e-17
Identity = 52/119 (43.70%), Postives = 61/119 (51.26%), Query Frame = 1
Query:   94 AILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGR---RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 441
            A L+ E+ RIL Q GTE             G Y C  CG  L+ S  KF SG GWP+F+E    A  R          RTEI CA C  HLGH+F       PT ER+C+NSVS+ FIP
Sbjct:   20 ATLNAEEHRILLQHGTEAPFCNRLLDNNQLGTYTCRFCGLPLFHSNAKFKSGTGWPSFFEPYTHAHIRKQHDTSHGMIRTEILCARCNSHLGHLFPDG--PPPTYERYCLNSVSLTFIP 136          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_PASMU (Peptide methionine sulfoxide reductase msrB OS=Pasteurella multocida GN=msrB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.099e-17
Identity = 50/118 (42.37%), Postives = 64/118 (54.24%), Query Frame = 1
Query:   91 RAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 435
            R  ++  Q  +   +GTE   TG+       G Y C  C + L+ S TKFD+GCGWP+F++ + P AI    D      RTEI C  C  HLGHVF  E    PT  R+CVNSVS+ F
Sbjct:    4 REDMTEMQVHVCLNQGTEYPFTGKLLDQQKKGLYRCVVCHSPLFVSDTKFDAGCGWPSFFQAISPEAIRYLDDYTLSRPRTEIRCGQCDAHLGHVF--EDGPPPTGLRYCVNSVSMAF 119          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_ERWT9 (Peptide methionine sulfoxide reductase msrB OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=msrB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.099e-17
Identity = 48/115 (41.74%), Postives = 64/115 (55.65%), Query Frame = 1
Query:  100 LSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDG--RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 435
            L+  Q  + ++ GTEP  +G+      +G Y+C  C   L+ S +K+DSGCGWP+FY+   P AI    D     +R EI C +C  HLGHVF       PT ER CVNS S+ F
Sbjct:   14 LTEMQRYVTQEHGTEPPYSGKLLHNKDEGIYHCLICRAPLFLSDSKYDSGCGWPSFYQPFSPEAIRYLEDDSHGMQRVEIRCGSCDAHLGHVFPDG--PQPTGERFCVNSASLSF 126          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_ERWCT (Peptide methionine sulfoxide reductase msrB OS=Erwinia carotovora subsp. atroseptica GN=msrB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.099e-17
Identity = 50/129 (38.76%), Postives = 72/129 (55.81%), Query Frame = 1
Query:   61 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFI 438
            DS   T  +   +   +++ + +Q+GTEP  +G+       G Y+C  C   L+ S +K+DSGCGWP+F + +     R  + +    RR EI C  C  HLGHVF  +G KT T ER+CVNS S+ FI
Sbjct:    4 DSASHTPSDNTEMTEMQRY-VTQQRGTEPAFSGKLLHNKRTGAYHCLCCQAPLFYSDSKYDSGCGWPSFDQPVSSEAVRYLEDESHNMRRIEIRCGQCDAHLGHVFP-DGPKT-TGERYCVNSASLSFI 129          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_YERE8 (Peptide methionine sulfoxide reductase msrB OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=msrB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.027e-16
Identity = 47/116 (40.52%), Postives = 62/116 (53.45%), Query Frame = 1
Query:  100 LSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFI 438
            L+  Q  + + +GTE   +G+      +G Y C  C   L+ S +KFDSGCGWP+FY+ L     R  D    +  R EI C  C  HLGHVF       PT ER+CVNS S+ F+
Sbjct:   14 LTDIQRHVTQLRGTEAPFSGKLLHNKREGVYQCLCCHQPLFISESKFDSGCGWPSFYQPLDAESIRYIDDYSHNMHRVEIRCGHCDAHLGHVFSDG--PQPTGERYCVNSASLNFV 127          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_STRP1 (Peptide methionine sulfoxide reductase msrB OS=Streptococcus pyogenes serotype M1 GN=msrB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.647e-16
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 1
Query:   73 KTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            +T +E +  +    + + +   TE   TGEY+  +  G Y     G  L+ S+ KF+SGCGWPAF + +   +  + D      RR E+     G HLGHVF  +G K     R+C+NS ++KFIP D
Sbjct:    2 ETSDELKQRIGDLSYEVTQHAATESPFTGEYDNFFEKGIYVDIVSGEVLFSSLDKFNSGCGWPAFSKPIENRMVTNHDDSSYGMRRVEVKSREAGSHLGHVF-SDGPKEAGGLRYCINSAALKFIPYD 128          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_STRP6 (Peptide methionine sulfoxide reductase msrB OS=Streptococcus pyogenes serotype M6 GN=msrB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.458e-16
Identity = 47/126 (37.30%), Postives = 66/126 (52.38%), Query Frame = 1
Query:   73 KTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG--AINRSPDPDG-RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 441
            +T EE +  +    + + +   TE   TGEY+  +  G Y     G  L+ S+ KF+SGCGWPAF + +     IN      G RR E+     G HLGHVF  +G K     R+C+NS ++KFIP
Sbjct:    2 ETSEELKQRIGDLSYEVTQHAATESPFTGEYDDFFEKGIYVDIVSGEVLFSSLDKFNSGCGWPAFSKPIENRMVINHDDSSYGMRRVEVKSREAGSHLGHVF-SDGPKEAGGLRYCINSAALKFIP 126          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_STRP3 (Peptide methionine sulfoxide reductase msrB OS=Streptococcus pyogenes serotype M3 GN=msrB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.458e-16
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 1
Query:   73 KTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            +T +E +  +    + + +   TE   TGEY+  +  G Y     G  L+ S+ KF+SGCGWPAF + +   +  + D      RR E+     G HLGHVF  +G K     R+C+NS ++KFIP D
Sbjct:    2 ETSDELKQRIGELSYEVTQHAATESPFTGEYDDFFEKGIYVDIVSGEVLFSSLDKFNSGCGWPAFSKPIENRMVTNHDDSSYGMRRVEVKSREAGSHLGHVF-SDGPKEAGGLRYCINSAALKFIPYD 128          
The following BLAST results are available for this feature:
BLAST of CK935702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
MSRB_YERP33.127e-1741.38Peptide methionine sulfoxide reductase msrB OS=Yer... [more]
MSRB2_RHIME3.127e-1741.73Peptide methionine sulfoxide reductase msrB 2 OS=R... [more]
MSRB_XYLFA6.967e-1743.70Peptide methionine sulfoxide reductase msrB OS=Xyl... [more]
MSRB_PASMU9.099e-1742.37Peptide methionine sulfoxide reductase msrB OS=Pas... [more]
MSRB_ERWT99.099e-1741.74Peptide methionine sulfoxide reductase msrB OS=Erw... [more]
MSRB_ERWCT9.099e-1738.76Peptide methionine sulfoxide reductase msrB OS=Erw... [more]
MSRB_YERE82.027e-1640.52Peptide methionine sulfoxide reductase msrB OS=Yer... [more]
MSRB_STRP12.647e-1635.16Peptide methionine sulfoxide reductase msrB OS=Str... [more]
MSRB_STRP63.458e-1637.30Peptide methionine sulfoxide reductase msrB OS=Str... [more]
MSRB_STRP33.458e-1635.16Peptide methionine sulfoxide reductase msrB OS=Str... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_E09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935702 ID=CK935702; Name=CK935702; organism=Citrus sinensis; type=EST; length=657bp
GCGGGGAAACACACCGCTGGTAAAAAAAGATTGNNNCCAAACCCCATNNN
TGCAGCAGCAGATTCCGTTCAGAAAACCGAGGAAGAATGGCGGGCCATTC
TCTCCCCCGAGCAGTTTAGGATTCTACGCCAGAAAGGAACCGAGCCGCGA
GGAACTGGGGAGTACAACAAGTTGTATGCGGATGGGTTTTACAACTGTGC
TGGCTGTGGAACTGCGCTTTACAAGTCTGTTACCAAATTCGATTCTGGAT
GTGGGTGGCCAGCTTTCTATGAAGGTCTTCCTGGAGCCATAAATCGCTCC
CCTGATCCTGATGGAAGGAGAACCGAGATAACTTGTGCTGCTTGCGGGGG
TCACTTGGGTCACGTCTTCAAAGGGGAGGGATTCAAAACGCCTACAGATG
AACGCCACTGTGTCAATAGTGTTTCAATTAAGTTTATTCCAGGTGATGCT
CCTGCTTCATCATGAAGAATGTAAGACTGTCATGGGGTTGTTGAATAAGA
TTTGACTGTTTGTCACTTCTGCCAATTGTTTTTGGCTTTAATGTCCTAGA
CATGGTGTTGTTTGTATAATTATTACGCGGCCAATATTAGCCTATGCCAT
AGTATAAACCACTTTGTTTGGTTTGCAGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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