CK935702

Overview
NameCK935702
Unique NameCK935702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1842 contig Csv1_Contig1842:1..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_PSEPG (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas putida (strain GB-1) GN=msrB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.699e-27
Identity = 59/130 (45.38%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   67 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAIN---RSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            ++KT +EWR++L PEQ+++ R KGTE   +G+YN    DG Y+C  C   L+ + TKFDSGCGWP+FY  +  +     R       RTE+TCA C  HLGHVF       PT  R+C+NSV I   P D
Sbjct:    4 IEKTLDEWRSMLDPEQYQVCRLKGTERPFSGKYNSERRDGIYHCICCNLPLFDAQTKFDSGCGWPSFYAPIEDSAMIEIRDTSHGMIRTEVTCARCDAHLGHVFPDG--PAPTGLRYCINSVCIDLRPRD 131          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_PSEF5 (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=msrB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26
Identity = 58/130 (44.62%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   61 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAIN---RSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 441
            + ++KT EEWR++L PEQ+ + R KGTE   +G+YN    DG Y+C  C   L+ S  KFDSGCGWP+FYE +  +     R       RTE+ CA C  HLGHVF       PT  R+C+NSV +  +P
Sbjct:    2 EKLEKTLEEWRSMLDPEQYNVCRLKGTERPFSGKYNGTKTDGVYHCICCNEPLFDSKAKFDSGCGWPSFYEPIADSAMVEIRDMSHGMIRTEVVCAKCDAHLGHVFPDG--PPPTGLRYCINSVCLDLVP 129          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_PSEE4 (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas entomophila (strain L48) GN=msrB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26
Identity = 61/130 (46.92%), Postives = 76/130 (58.46%), Query Frame = 1
Query:   67 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAIN---RSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            + KT EEWRA+L P Q+++ R KGTE   +G+YN    DG Y+C  C   L+ S  KFDSGCGWP+FYE +  A     R       RTE+TCA C  HLGHVF       PT  R+C+NSV +   P D
Sbjct:    4 IDKTLEEWRAMLDPAQYQVCRLKGTERPFSGKYNSERRDGVYHCICCDLPLFDSKAKFDSGCGWPSFYEPIEEAAMIEIRDTSHGMIRTEVTCAQCDAHLGHVFPDG--PPPTGLRYCINSVCLDLKPRD 131          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_METPP (Peptide methionine sulfoxide reductase msrB OS=Methylibium petroleiphilum (strain PM1) GN=msrB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26
Identity = 61/128 (47.66%), Postives = 77/128 (60.16%), Query Frame = 1
Query:   67 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 441
            VQKTE EWRA L P QF + R   TE   TG+Y   + +G Y+C GC   L+ S TKFD+GCGWP++++ L G  I+R  D      R E+ C  CG HLGHVF       PT ER+C+NS S+ F P
Sbjct:   11 VQKTEAEWRAQLDPMQFEVTRHGATERAFTGKYADHWQEGVYHCVGCNAPLFDSGTKFDAGCGWPSYFQPLRGEIIDRVVDRSHGMVRVEVRCQDCGAHLGHVFPDG--PEPTGERYCINSASLGFEP 136          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_BRAJA (Peptide methionine sulfoxide reductase msrB OS=Bradyrhizobium japonicum GN=msrB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 62/131 (47.33%), Postives = 81/131 (61.83%), Query Frame = 1
Query:   61 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYE-GLPGAINRSPDPDGR--RTEITCAACGGHLGHVF-KGEGFKTPTDERHCVNSVSIKFIP 441
            D V K+EE+WR  LSP Q+ +LR+K TE   +GEY   +  G Y CAGCG  L++S  KFDSGCGWP+F +  +   ++   D      RTE+ CA C GHLGHVF  G G   PT  R+C+NS ++K  P
Sbjct:   11 DKVIKSEEQWRRELSPIQYAVLREKATERPFSGEYEHDHRAGTYVCAGCGNVLFESDAKFDSGCGWPSFTQPAVESHVDEERDVSHGMIRTEVLCAKCSGHLGHVFPDGPG---PTGLRYCINSAALKLEP 138          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_THEEB (Peptide methionine sulfoxide reductase msrB OS=Thermosynechococcus elongatus (strain BP-1) GN=msrB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.822e-26
Identity = 62/134 (46.27%), Postives = 82/134 (61.19%), Query Frame = 1
Query:   67 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAPAS 459
            V KT+ EW+A L+PEQ+ + R+KGTE   TG Y      G Y+C  CGT L++S TK+DSG GWP+F++ L P  I    D      RTE+ CA C  HLGHVF  E    PT  R+C+NS ++ F+P  A +S
Sbjct:    4 VVKTDAEWQAQLTPEQYYVTRKKGTERAFTGCYWNNKKPGLYSCVCCGTPLFRSETKYDSGTGWPSFWQPLDPNNIRMERDLSHGMVRTEVLCAVCDAHLGHVF--EDGPPPTGLRYCINSAALAFVPESAASS 135          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_PSEPF (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas fluorescens (strain Pf0-1) GN=msrB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.686e-26
Identity = 59/130 (45.38%), Postives = 76/130 (58.46%), Query Frame = 1
Query:   61 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 441
            + ++KT EEWRA+L PEQF + R   TE   +G+YN    DG Y+C  C   L+ S TKFDSGCGWP+FY  +   A+    D      RTE+ CA C  HLGHVF       PT  R+C+NSV +  +P
Sbjct:    2 EKIEKTLEEWRAMLDPEQFNVCRLSATERPFSGKYNATKTDGVYHCICCNEPLFDSKTKFDSGCGWPSFYAPIGDNAMTEIRDTSHGMIRTEVKCAKCDAHLGHVFPDG--PPPTGLRYCINSVCLDLVP 129          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_AGRT5 (Peptide methionine sulfoxide reductase msrB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=msrB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.287e-26
Identity = 61/128 (47.66%), Postives = 77/128 (60.16%), Query Frame = 1
Query:   67 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 441
            V K++ +WR  L+PEQ+ ILR+ GTE   TG Y      G Y CA C   L+ S TKFD+GCGWP+++E + PGA+    D      RTEI CA CGGHLGHVF       PT  R+C+N  S+ F P
Sbjct:    9 VNKSDADWREQLTPEQYHILREHGTERPFTGPYWNSTEKGLYRCAACDEPLFLSDTKFDAGCGWPSYFEPVKPGAVTEHRDSTHGMVRTEIRCANCGGHLGHVFPDG--PPPTGLRYCINGHSMVFEP 134          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_DECAR (Peptide methionine sulfoxide reductase msrB OS=Dechloromonas aromatica (strain RCB) GN=msrB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.072e-25
Identity = 59/125 (47.20%), Postives = 77/125 (61.60%), Query Frame = 1
Query:   67 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFY-EGLPGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 432
            ++KT+ EWRA L   ++R+ RQKGTE   TG+Y   + DG Y C  CG  L++S TKFDSGCGWP+F+       I+   D      RTE+TC  CG HLGHVF  +    PT  R+C+NS S+K
Sbjct:    4 IEKTDAEWRAQLDENEYRVTRQKGTERAFTGKYWDTHDDGTYRCICCGAPLFRSETKFDSGCGWPSFHTPNDEKLIDEHVDQSFGMIRTEVTCHDCGAHLGHVF--DDGPAPTGLRYCINSASLK 126          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_ACIBY (Peptide methionine sulfoxide reductase msrB OS=Acinetobacter baumannii (strain AYE) GN=msrB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.072e-25
Identity = 60/125 (48.00%), Postives = 75/125 (60.00%), Query Frame = 1
Query:   67 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 432
            V KT+ EW+  LSPE++RI RQKGTEP  TG+Y      G Y C  CG  L+ S  K+DSGCGWP+F+  L G++   +        RTEI C  C  HLGHVF  E    PT  R+CVNS S++
Sbjct:    4 VNKTDREWQRELSPEEYRITRQKGTEPAFTGQYWNTKQHGTYVCRCCGAELFSSDAKYDSGCGWPSFFRPLNGSVIDEHEDLTHGMVRTEIVCHDCEAHLGHVF--EDGPQPTGLRYCVNSASLQ 126          
The following BLAST results are available for this feature:
BLAST of CK935702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
MSRB_PSEPG9.699e-2745.38Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_PSEF51.267e-2644.62Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_PSEE41.267e-2646.92Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_METPP1.267e-2647.66Peptide methionine sulfoxide reductase msrB OS=Met... [more]
MSRB_BRAJA2.161e-2647.33Peptide methionine sulfoxide reductase msrB OS=Bra... [more]
MSRB_THEEB2.822e-2646.27Peptide methionine sulfoxide reductase msrB OS=The... [more]
MSRB_PSEPF3.686e-2645.38Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_AGRT56.287e-2647.66Peptide methionine sulfoxide reductase msrB OS=Agr... [more]
MSRB_DECAR1.072e-2547.20Peptide methionine sulfoxide reductase msrB OS=Dec... [more]
MSRB_ACIBY1.072e-2548.00Peptide methionine sulfoxide reductase msrB OS=Aci... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_E09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935702 ID=CK935702; Name=CK935702; organism=Citrus sinensis; type=EST; length=657bp
GCGGGGAAACACACCGCTGGTAAAAAAAGATTGNNNCCAAACCCCATNNN
TGCAGCAGCAGATTCCGTTCAGAAAACCGAGGAAGAATGGCGGGCCATTC
TCTCCCCCGAGCAGTTTAGGATTCTACGCCAGAAAGGAACCGAGCCGCGA
GGAACTGGGGAGTACAACAAGTTGTATGCGGATGGGTTTTACAACTGTGC
TGGCTGTGGAACTGCGCTTTACAAGTCTGTTACCAAATTCGATTCTGGAT
GTGGGTGGCCAGCTTTCTATGAAGGTCTTCCTGGAGCCATAAATCGCTCC
CCTGATCCTGATGGAAGGAGAACCGAGATAACTTGTGCTGCTTGCGGGGG
TCACTTGGGTCACGTCTTCAAAGGGGAGGGATTCAAAACGCCTACAGATG
AACGCCACTGTGTCAATAGTGTTTCAATTAAGTTTATTCCAGGTGATGCT
CCTGCTTCATCATGAAGAATGTAAGACTGTCATGGGGTTGTTGAATAAGA
TTTGACTGTTTGTCACTTCTGCCAATTGTTTTTGGCTTTAATGTCCTAGA
CATGGTGTTGTTTGTATAATTATTACGCGGCCAATATTAGCCTATGCCAT
AGTATAAACCACTTTGTTTGGTTTGCAGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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