CK935702

Overview
NameCK935702
Unique NameCK935702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_VARPS (Peptide methionine sulfoxide reductase msrB OS=Variovorax paradoxus (strain S110) GN=msrB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.884e-24
Identity = 59/131 (45.04%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   67 VQKTEEEWRAILS-----PEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAF-YEGLPGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 435
            ++KT+ EW+A+L+     P  F + R   TE   TG+Y   + DG Y+C  CG  L++S TKFD+GCGWP+F  E +PGAI    D      RTE  CA CG HLGHVF      T T  R+C+NS S+ F
Sbjct:    5 IEKTDAEWKALLAEKGAEPAAFEVTRHAATERPFTGKYEAHWDDGTYHCICCGAKLFESSTKFDAGCGWPSFSQEAVPGAIRNIVDRSHGMVRTENVCANCGAHLGHVFPDG--PTETGLRYCMNSASLDF 133          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_POLNA (Peptide methionine sulfoxide reductase msrB OS=Polaromonas naphthalenivorans (strain CJ2) GN=msrB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.884e-24
Identity = 61/133 (45.86%), Postives = 75/133 (56.39%), Query Frame = 1
Query:   67 VQKTEEEWRAILS-----PEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAF-YEGLPGAINRSPDP--DGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 441
            +QKT+ EW+A+L+     P  F + R   TE   TG+Y   YA+G Y C  C   L+ S TKFD+GCGWP+F  E   GAI    D      RTE  CA CG HLGHVF      TPT  R+C+NS S+ F P
Sbjct:    5 IQKTDAEWKALLTEKGAEPVAFNVTRHAATERPFTGKYEDNYAEGTYRCICCDAELFDSSTKFDAGCGWPSFSQEVKEGAIEEHVDKAHGMTRTETVCANCGAHLGHVFPDG--PTPTGLRYCMNSASLDFKP 135          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_POLSJ (Peptide methionine sulfoxide reductase msrB OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=msrB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.712e-23
Identity = 60/133 (45.11%), Postives = 75/133 (56.39%), Query Frame = 1
Query:   67 VQKTEEEWRAILS-----PEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 441
            +QKT+ EW+A+L+     P  F + R   TE   TG+Y   YA G Y C  C   L+ S +KFD+GCGWP+F + L  GAI    D      RTE  CA CG HLGHVF      TPT  R+C+NS S+ F P
Sbjct:    5 IQKTDAEWKALLAEKGAEPVAFEVTRHAATERPFTGKYEDNYAQGTYRCICCDAELFDSSSKFDAGCGWPSFSQELNKGAIEEHVDRAHGMTRTETVCANCGAHLGHVFPDG--PTPTGLRYCMNSASLDFKP 135          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB3_MOUSE (Methionine-R-sulfoxide reductase B3, mitochondrial OS=Mus musculus GN=Msrb3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.712e-23
Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 1
Query:   76 TEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGDA 450
            +++E R  L+P Q+ + ++KGTE    GEY      G Y C  CGT L+KS TKFDSG GWPAF++ +        D       R E +C+ CG HLGH+F  +    PT +R+C+NS S+ F P D+
Sbjct:   39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPAFHDVISSEAIEFTDDFSYGMHRVETSCSQCGAHLGHIF--DDGPRPTGKRYCINSASLSFTPADS 164          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_PSEMY (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas mendocina (strain ymp) GN=msrB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 55/132 (41.67%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   61 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            D V K+ + WR  L+ EQF + R  GTE   TG Y+     G Y+CA CG AL+ S  K+DSG GWP++++ +   +  S D       R E+ CA C  HLGHVF       PT  R+C+NS+S+K +P D
Sbjct:    2 DKVDKSLDTWREELTDEQFHVCRLGGTERPFTGAYHDSKTPGIYHCACCGEALFDSDAKYDSGSGWPSYFQPINDEVIASLDDYSHGMHRIEVKCAKCDAHLGHVFPDG--PRPTGLRYCINSLSLKLVPRD 131          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_VIBPA (Peptide methionine sulfoxide reductase msrB OS=Vibrio parahaemolyticus GN=msrB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.506e-23
Identity = 60/130 (46.15%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   67 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGR---RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            V K++E+WR  LS E+FR+ R++GTEP  +G+       G Y C  C   L+ S  K+DSGCGWP+F   L     R  +       RTEI CA+C  HLGHVF+ +G KT T ER+CVNSVS+ F   D
Sbjct:   19 VTKSDEQWREQLSDEEFRVCREQGTEPPFSGKLLHNKETGVYACTCCNAPLFISDNKYDSGCGWPSFDAPLNNEAIRYLEDLSHGMVRTEIRCASCDSHLGHVFE-DGPKT-TGERYCVNSVSLIFNKSD 146          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB3_PONAB (Methionine-R-sulfoxide reductase B3, mitochondrial OS=Pongo abelii GN=MSRB3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.497e-23
Identity = 53/132 (40.15%), Postives = 79/132 (59.85%), Query Frame = 1
Query:   76 TEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAPASS 462
            +++E R  L+P Q+ + ++KGTE    GEY      G Y C  CGT L+KS TKFDSG GWP+F++ +   AI  + D      R E +C+ CG HLGH+F  +    PT +R+C+NS ++ F P D+  ++
Sbjct:   39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVISSEAITFTDDFSYGMHRVETSCSQCGAHLGHIF--DDGPRPTGKRYCINSAALSFTPADSSGAA 168          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB3_HUMAN (Methionine-R-sulfoxide reductase B3, mitochondrial OS=Homo sapiens GN=MSRB3 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.110e-22
Identity = 53/132 (40.15%), Postives = 79/132 (59.85%), Query Frame = 1
Query:   76 TEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAPASS 462
            +++E R  L+P Q+ + ++KGTE    GEY      G Y C  CGT L+KS TKFDSG GWP+F++ +   AI  + D      R E +C+ CG HLGH+F  +    PT +R+C+NS ++ F P D+  ++
Sbjct:   39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIF--DDGPRPTGKRYCINSAALSFTPADSSGTA 168          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_SACD2 (Peptide methionine sulfoxide reductase msrB OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=msrB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 59/128 (46.09%), Postives = 76/128 (59.38%), Query Frame = 1
Query:   58 ADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 432
            +D  +K +E WR  L  EQFRI R+KGTE   TGEY      G Y C  C   L++S TK+DSG GWP+F++ + G A+    D      R E+ C  CG HLGHVF  +G K PT  R+C+NS SI+
Sbjct:    2 SDLTKKDDEYWRDKLDAEQFRICREKGTERPFTGEYCDSKEPGTYLCRCCAEPLFESATKYDSGSGWPSFFQPIKGDAVGEIKDTSHGMVRVEVVCHNCGCHLGHVFP-DGPK-PTGLRYCINSASIQ 127          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_PSEA7 (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas aeruginosa (strain PA7) GN=msrB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   67 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 441
            + K  + WR  L+ EQF I R  GTE   +GEY+     G Y+C  CGTAL+ S  K+DSG GWP++++ + G   R  D       R E+ C  C  HLGHVF       PT  R+C+NS S+K +P
Sbjct:    4 IDKPLDSWREELTEEQFHICRLGGTERAFSGEYHATKTPGVYHCTCCGTALFDSDAKYDSGSGWPSYFQPVDGEAVRELDDFSHGMHRIEVRCGRCDAHLGHVFPDG--PRPTGLRYCINSASLKLVP 129          
The following BLAST results are available for this feature:
BLAST of CK935702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
MSRB_VARPS5.884e-2445.04Peptide methionine sulfoxide reductase msrB OS=Var... [more]
MSRB_POLNA5.884e-2445.86Peptide methionine sulfoxide reductase msrB OS=Pol... [more]
MSRB_POLSJ1.712e-2345.11Peptide methionine sulfoxide reductase msrB OS=Pol... [more]
MSRB3_MOUSE1.712e-2341.41Methionine-R-sulfoxide reductase B3, mitochondrial... [more]
MSRB_PSEMY2.920e-2341.67Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_VIBPA6.506e-2346.15Peptide methionine sulfoxide reductase msrB OS=Vib... [more]
MSRB3_PONAB8.497e-2340.15Methionine-R-sulfoxide reductase B3, mitochondrial... [more]
MSRB3_HUMAN1.110e-2240.15Methionine-R-sulfoxide reductase B3, mitochondrial... [more]
MSRB_SACD21.449e-2246.09Peptide methionine sulfoxide reductase msrB OS=Sac... [more]
MSRB_PSEA71.449e-2241.41Peptide methionine sulfoxide reductase msrB OS=Pse... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_E09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935702 ID=CK935702; Name=CK935702; organism=Citrus sinensis; type=EST; length=657bp
GCGGGGAAACACACCGCTGGTAAAAAAAGATTGNNNCCAAACCCCATNNN
TGCAGCAGCAGATTCCGTTCAGAAAACCGAGGAAGAATGGCGGGCCATTC
TCTCCCCCGAGCAGTTTAGGATTCTACGCCAGAAAGGAACCGAGCCGCGA
GGAACTGGGGAGTACAACAAGTTGTATGCGGATGGGTTTTACAACTGTGC
TGGCTGTGGAACTGCGCTTTACAAGTCTGTTACCAAATTCGATTCTGGAT
GTGGGTGGCCAGCTTTCTATGAAGGTCTTCCTGGAGCCATAAATCGCTCC
CCTGATCCTGATGGAAGGAGAACCGAGATAACTTGTGCTGCTTGCGGGGG
TCACTTGGGTCACGTCTTCAAAGGGGAGGGATTCAAAACGCCTACAGATG
AACGCCACTGTGTCAATAGTGTTTCAATTAAGTTTATTCCAGGTGATGCT
CCTGCTTCATCATGAAGAATGTAAGACTGTCATGGGGTTGTTGAATAAGA
TTTGACTGTTTGTCACTTCTGCCAATTGTTTTTGGCTTTAATGTCCTAGA
CATGGTGTTGTTTGTATAATTATTACGCGGCCAATATTAGCCTATGCCAT
AGTATAAACCACTTTGTTTGGTTTGCAGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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