CK935702

Overview
NameCK935702
Unique NameCK935702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_ECODH (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli (strain K12 / DH10B) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   82 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  HLGHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_ECOBW (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli (strain K12 / BW2952) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   82 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  HLGHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_ECO8A (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O8 (strain IAI1) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   82 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  HLGHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSETKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_ECO7I (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   82 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  HLGHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_ECO5E (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   82 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  HLGHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_ECO57 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O157:H7 GN=msrB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   82 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  HLGHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_ECO55 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli (strain 55989 / EAEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   82 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  HLGHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_ECO27 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   82 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  HLGHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_ECO24 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   82 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 447
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  HLGHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130          
BLAST of CK935702 vs. ExPASy Swiss-Prot
Match: MSRB_VIBVU (Peptide methionine sulfoxide reductase msrB OS=Vibrio vulnificus GN=msrB PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.733e-20
Identity = 55/130 (42.31%), Postives = 74/130 (56.92%), Query Frame = 1
Query:   67 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSP-------DPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 435
            V K++++WR  LS +++ + R++GTEP  +G+       G Y C  C   L+ SV K+DSGCGWP+F       IN +            +R EI CA C  HLGHVF  +G KT T ER CVNSVS+ F
Sbjct:   24 VLKSDQQWREQLSEQEYHVCREQGTEPPFSGKLLHNKDSGEYACTCCHAPLFSSVNKYDSGCGWPSF----DAPINETAVLYLDDFSHGMKRVEIRCARCDSHLGHVFP-DGPKT-TGERFCVNSVSLIF 147          
The following BLAST results are available for this feature:
BLAST of CK935702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
MSRB_ECODH5.155e-2043.20Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_ECOBW5.155e-2043.20Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_ECO8A5.155e-2043.20Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_ECO7I5.155e-2043.20Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_ECO5E5.155e-2043.20Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_ECO575.155e-2043.20Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_ECO555.155e-2043.20Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_ECO275.155e-2043.20Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_ECO245.155e-2043.20Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_VIBVU6.733e-2042.31Peptide methionine sulfoxide reductase msrB OS=Vib... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_E09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935702 ID=CK935702; Name=CK935702; organism=Citrus sinensis; type=EST; length=657bp
GCGGGGAAACACACCGCTGGTAAAAAAAGATTGNNNCCAAACCCCATNNN
TGCAGCAGCAGATTCCGTTCAGAAAACCGAGGAAGAATGGCGGGCCATTC
TCTCCCCCGAGCAGTTTAGGATTCTACGCCAGAAAGGAACCGAGCCGCGA
GGAACTGGGGAGTACAACAAGTTGTATGCGGATGGGTTTTACAACTGTGC
TGGCTGTGGAACTGCGCTTTACAAGTCTGTTACCAAATTCGATTCTGGAT
GTGGGTGGCCAGCTTTCTATGAAGGTCTTCCTGGAGCCATAAATCGCTCC
CCTGATCCTGATGGAAGGAGAACCGAGATAACTTGTGCTGCTTGCGGGGG
TCACTTGGGTCACGTCTTCAAAGGGGAGGGATTCAAAACGCCTACAGATG
AACGCCACTGTGTCAATAGTGTTTCAATTAAGTTTATTCCAGGTGATGCT
CCTGCTTCATCATGAAGAATGTAAGACTGTCATGGGGTTGTTGAATAAGA
TTTGACTGTTTGTCACTTCTGCCAATTGTTTTTGGCTTTAATGTCCTAGA
CATGGTGTTGTTTGTATAATTATTACGCGGCCAATATTAGCCTATGCCAT
AGTATAAACCACTTTGTTTGGTTTGCAGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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