CK935707

Overview
NameCK935707
Unique NameCK935707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:20..956. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935707 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 5.127e-30
Identity = 62/185 (33.51%), Postives = 89/185 (48.11%), Query Frame = 1
Query:  343 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNPDC 888
            K ++  FFA   HET                CYI +++ A+ D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +C +FG+ PG N  C
Sbjct:  135 KREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          

HSP 2 Score: 43.1282 bits (100), Expect = 5.127e-30
Identity = 25/85 (29.41%), Postives = 36/85 (42.35%), Query Frame = 3
Query:  111 GSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 365
            G     G     G      G   G   + +  E F + +  +    C  + FYT  +F+ AA+++ GF N       KREIAAFF
Sbjct:   58 GPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFF 142          
BLAST of CK935707 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.133e-30
Identity = 56/184 (30.43%), Postives = 87/184 (47.28%), Query Frame = 1
Query:  343 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNPDC 888
            K ++  FFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG      +  R+G++  +C + G+ PG N  C
Sbjct:  120 KREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          

HSP 2 Score: 53.1434 bits (126), Expect = 5.133e-30
Identity = 29/87 (33.33%), Postives = 43/87 (49.43%), Query Frame = 3
Query:  126 CGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 365
            CG G   G   +G G  G       +  +++   F  +   +N A   C  + FYT  AF+ A + +PGF + G++   KREIAAFF
Sbjct:   44 CGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGI---KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFF 127          
BLAST of CK935707 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.352e-29
Identity = 53/184 (28.80%), Postives = 86/184 (46.74%), Query Frame = 1
Query:  343 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNPDC 888
            K ++  FFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC       +  R+G++  +C +  + PG N  C
Sbjct:  131 KREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          

HSP 2 Score: 53.9138 bits (128), Expect = 9.352e-29
Identity = 30/81 (37.04%), Postives = 41/81 (50.62%), Query Frame = 3
Query:  129 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 365
            G G   G    G G+ G  +  +++   F  +   +N A   C  + FYT  AF+ A  A+PGF + G E   KREIAAFF
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGI---KNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFF 138          
BLAST of CK935707 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.760e-27
Identity = 52/156 (33.33%), Postives = 76/156 (48.72%), Query Frame = 1
Query:  433 YCYIRQVSPASSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNPDC 888
            +CYI ++  AS D          P      Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T +C + G+  GDN  C
Sbjct:  136 FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          

HSP 2 Score: 46.2098 bits (108), Expect = 3.760e-27
Identity = 27/80 (33.75%), Postives = 38/80 (47.50%), Query Frame = 3
Query:  126 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 365
            CG+G   G   T        +   I    F + +  + D+ C  + FYT DAF+ A  ++  FG  G+E   KREIAA F
Sbjct:   47 CGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAF 126          
BLAST of CK935707 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 6.667e-26
Identity = 71/194 (36.60%), Postives = 103/194 (53.09%), Query Frame = 1
Query:  304 FQALVTLEMKPCVKEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYG-RGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGND--AVR-NRIGFFTTFCGKFGIQPG 873
            F A  T+      K ++  F A     T+G  +D     +AWG C+I   +   +D           G+ Y  RGPIQLT N NY   G+A+G DL+ NPDL+  DP++SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+        G+D  AVR + IGF+  +C   G+  G
Sbjct:  167 FPAFGTIGDVATRKREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF-----GHDDFAVRSSSIGFYKRYCDMLGVSYG 348          
BLAST of CK935707 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.719e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  655 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 792
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CK935707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_ORYSJ5.127e-3033.51Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE5.133e-3030.43Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE9.352e-2928.80Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU3.760e-2733.33Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
AGI_URTDI6.667e-2636.60Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI4_ARAHY2.719e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_F02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935707 ID=CK935707; Name=CK935707; organism=Citrus sinensis; type=EST; length=938bp
GGGGGACACACACCAAGTAAAGGATAATTGATATCATAACTCTTGCTTTC
AAAATGAGGCTCATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTT
TGTACTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCGTTGTGTGCGGTG
AACGTGATACTGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATC
TCAAGGGAGATGTTTGAAGACTTGCTTCCGTATAGAAATGATGCCCGATG
CCCTGCCAGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCCAAG
CTTTTCCAGGCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAA
ATTGCTGCCTTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGA
CCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAA
GTTAGCCCTGCGTCGTCCGACTACTGTTATCCTTACTGTCCATGTCCCTT
GCCAGGGCAATACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTGCA
ATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCA
GACCTACTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTT
CTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCG
ACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGA
TACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCTACGT
TGGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTACCACTTTCTGTG
GCAAGTTTGGGATTCAGCCTGGTGACAATCCTGATTGCTCCAACCAACGG
CCTTATGGCCCTTATCTGATGGCNNNATCTATGTGATC
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