CK935725

Overview
NameCK935725
Unique NameCK935725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:23..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935725 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.770e-74
Identity = 126/241 (52.28%), Postives = 163/241 (67.63%), Query Frame = 3
Query:  183 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCREVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNPTPY 902
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A + F  FG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYCY R+                 PG+ Y+GRGPIQ+++N NY   G A+GV+LLNNPDL+A D V+SFK+A+WFWMTAQ PKPS  +VI   W PS  D   GR+PG+G+ TNIINGG+EC    N  + NRIGF+  +C   G+ PG+NLDC+N  P+
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPF 245          
BLAST of CK935725 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 6.230e-74
Identity = 127/241 (52.70%), Postives = 168/241 (69.71%), Query Frame = 3
Query:  183 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCREVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGY-VGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNPTPY 902
            +G II+R MFE +L +R D  C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC + +++P+                YYGRGPIQLT   NY   G+ALG+DL+NNPDL+++DPV++F++AIWFWMTAQ PKPSC +VI ++W PS +D ++GRLPGYG+ TNIINGG ECG     D  ++R+G++  +C  F +  GDN+ C +  PY
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDPP-------------YYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPY 253          
BLAST of CK935725 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.367e-73
Identity = 132/240 (55.00%), Postives = 167/240 (69.58%), Query Frame = 3
Query:  165 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCREVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 884
            G+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HETTGG   A G  +A GYC++R+ +   S              +YGRGPIQLT   NY   G+A+G DL+NNPDL+ATD  +SFK+AIWFWMTAQ  KPSC +VI  +W PSA D +A R PGYG+ TNIINGGIECG   N  V +RIGF+  +C    + PGDNLDC
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADG-PFAGGYCFVREGNQMGSG-------------FYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDC 238          
BLAST of CK935725 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 4.038e-73
Identity = 129/244 (52.87%), Postives = 165/244 (67.62%), Query Frame = 3
Query:  165 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCREVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSN 890
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HET GG      G +  GYC+++Q+  +               +YYGRGPIQLT   NY R G+ +GV  +L+NNPDL+ATDP++SFK+AIWFWMT Q  KPSC  VII +W PS  D  A R+PGYG+ TNIING  ECG   N A  +RIGF+  +CG   +  G+NLDC+N
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD--------------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNN 246          
BLAST of CK935725 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 4.038e-73
Identity = 133/268 (49.63%), Postives = 170/268 (63.43%), Query Frame = 3
Query:  111 SAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX---LPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCREVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNPTPY 902
            SA  CG G          G+ G  +  I+SR +F+ +L +RNDA CPA  FYTYDAF+ AA AFPGF  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYC+  +   A+                 +YYGRGPIQL++N NY   G+A+G DLL +PDL+A+D  +SF +A WFWMT Q PKPSC  V   +W PSA+D  AGR+PGYG+ TNIINGG+ECG+  +D V +RIGF+  +C   G+    NLDC +  P+
Sbjct:   61 SAAGCGGG----GPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPF 324          
BLAST of CK935725 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.618e-72
Identity = 129/236 (54.66%), Postives = 163/236 (69.07%), Query Frame = 3
Query:  183 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCREVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSN 890
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FPGFG +G++T R++EIAAFF QT HETTGG   A    +  GYC++RQ   +               +YYGRGPIQLT   NY + G A+G +L+NNPDL+ATD  +SFK+AIWFWMT Q  KPS  +VII  W PSA D  A R+PGYG+ TNIINGGIECG   NDAV +RIG++  +CG   + PG+NLDC N
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD--------------RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYN 246          
BLAST of CK935725 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.936e-71
Identity = 129/236 (54.66%), Postives = 160/236 (67.80%), Query Frame = 3
Query:  183 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCREVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSN 890
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FPGFG SG++T R++EIAAFF QT HETTGG   A    +  GYC++RQ   +               +YYGRGPIQLT   NY + G A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPS  +VII  W PSA D +A R PG G+ TNIINGGIECG   N AV +RIG++  +CG   + PGDNLDC N
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD--------------RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYN 246          
BLAST of CK935725 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.436e-70
Identity = 131/257 (50.97%), Postives = 169/257 (65.76%), Query Frame = 3
Query:  123 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCREVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSN 890
            C +  +     +G    G  +G +I++ +F  +LP R++++CPARGFYTYDAFI AA +FP FG SG    + +RE+AAFF QT HETTGG T     ++ WGYC+  +++ A+S              YYGRGPIQLT   NY   G ALG+DL+ NPDL++TD V+SFK+AIWFWMTAQ  KPSC +VI+  W PSA D  AGR+PGYG+ TNIINGGIECG   NDA  +RIG++  +C   G   G NLDC N
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSPP------------YYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYN 255          
BLAST of CK935725 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 7.128e-70
Identity = 131/242 (54.13%), Postives = 163/242 (67.36%), Query Frame = 3
Query:  165 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCREVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSN 890
            GT    +G I++ ++F+ +L  RNDARC A  FYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HETTGG T +P G YA GYC++R+ +   +              YYGRGPIQLT   NY   G+A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPSC +VI   W PSA D +A R+PGYG+ TNIINGGIECG   N  V +RIG++        + PGDNLDC N
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNG-------------YYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYN 247          
BLAST of CK935725 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 3.311e-67
Identity = 128/260 (49.23%), Postives = 154/260 (59.23%), Query Frame = 3
Query:  126 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCREVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNPTPY 902
            G G   G    G G   G L  II   MF+D+L YRND +CPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF  QT HET G W  A G +Y WGYC++                                 N NY  CG+ L + LL  P+L+ TDP ++FK+A+WFWMT Q PKPSC  VI + W PSA D  AGR+PGYG+ TNIINGGIECG  G N+A  NRIGF+ T+C   G   G NLDC    P+
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM---------------------------------NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPF 292          
The following BLAST results are available for this feature:
BLAST of CK935725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHID_SOLLC4.770e-7452.28Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI11_ORYSJ6.230e-7452.70Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC2.367e-7355.00Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLLC4.038e-7352.87Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI12_ORYSJ4.038e-7349.63Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIQ_TOBAC2.618e-7254.66Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIP_TOBAC4.936e-7154.66Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI8_ORYSJ1.436e-7050.97Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY7.128e-7054.13Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIB_POPTR3.311e-6749.23Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004552_D09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935725 ID=CK935725; Name=CK935725; organism=Citrus sinensis; type=EST; length=902bp
GGGNGAACACCAAGTAAAGGATAATTGATATCATAANNNNNGCTTTCAAA
ATGAGGCTCATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGT
ACTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCGTTGTGTGCGGTGAAC
GTGATACTGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCA
AGGGAGATGTTTGAAGACTTGCTTCCGTATAGAAATGATGCCCGATGCCC
TGCCAGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCCAAGCTT
TTCCAGGCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATT
GCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGACCGA
TGCACCTGGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTA
GCCCTGCGTCGTCCGACTACTGTTATCCTTACTGTCCATGTCCCTTGCCA
GGGCAATACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTA
CTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACC
TACTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGG
ATGACTGCACAGCCACCAAAGCCATCGTGCCGCGAAGTCATTATCGACGA
ATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACG
GTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCTACGTTGGG
AATGACGCTGTACGTAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAA
GTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTCCAACCCAACGCCTT
AT
back to top