CK935728

Overview
NameCK935728
Unique NameCK935728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935728 vs. ExPASy Swiss-Prot
Match: MPV17_MOUSE (Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.176e-11
Identity = 47/171 (27.49%), Postives = 74/171 (43.27%), Query Frame = 3
Query:  168 WRKYLIQLQVRPLRTKAITAGVLAGCSDAIAQKI---SGVEKXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKA 671
            WR Y   L   P + + +TAG L G  D I+Q++    G+++              G+  P      K LD +  G       KK+LL+Q  F+P     F+   G ++ G        K+++DYP    T++ +WP V   NF   P  +R      VA  W  +++ KA
Sbjct:    4 WRAYQRALAAHPWKVQVLTAGSLMGVGDMISQQLVERRGLQQHQAGRTLTMVSLGCGFVGPVVGGWYKVLDHLIPGTTKVHALKKMLLDQGGFAPCFLGCFLPLVG-ILNGMSAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAIVWNSYLSWKA 173          
BLAST of CK935728 vs. ExPASy Swiss-Prot
Match: MPV17_XENLA (Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.535e-11
Identity = 46/174 (26.44%), Postives = 74/174 (42.53%), Query Frame = 3
Query:  168 WRKYLIQLQVRPLRTKAITAGVLAGCSDAIAQKI---SGVEKXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESA 680
            WR Y   L   P + + +TAG L G  D I+Q++    G++              F +  P      K LD I  G       KK+LL+Q+ F+P     F++     + G     +  K+++DY     T++ +WP V   NF + P   R      VA  W  +++ KA  +
Sbjct:    5 WRAYQRLLGAHPWKVQIVTAGSLVGVGDVISQQLLERKGLKGHSIERTVKMMGIGFCFVGPVVGGWYKILDRIIPGSGKPVALKKMLLDQVAFAPCFLGCFLS-IASALNGLSGEQIWGKLKRDYKDALITNYYIWPAVQVANFYFIPLYHRLAVVQFVAIIWNSYLSWKANKS 177          
BLAST of CK935728 vs. ExPASy Swiss-Prot
Match: SYM1_NEUCR (Protein sym-1 OS=Neurospora crassa GN=sym-1 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.619e-11
Identity = 49/169 (28.99%), Postives = 78/169 (46.15%), Query Frame = 3
Query:  177 YLIQLQVRPLRTKAITAGVLAGCSDAIAQKISGVEKXXXXXXXXXXXFDFGYGVPFG-------HFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFIN 662
            Y  QL  RPL T+A+T  +L G  D  AQ++                     G  FG        FL K +  +  G  NK++  +V  +Q +F+P    +F+     V+EG     V +K++K+Y     T+W VWP V  VNF+  P   R LF ++++  W  +++
Sbjct:    5 YKAQLAARPLLTQAVTTSILFGVGDVAAQQLVDRRGLSNHDLTRTGRMVLYGGAVFGPAATTWFRFLQKRV--VVPGSTNKTILARVAADQGLFAPTFIGIFLGSMA-VLEGT---DVKEKLQKNYWEALSTNWMVWPFVQMVNFKVVPLDHRVLFVNVISIGWNCYLS 167          
BLAST of CK935728 vs. ExPASy Swiss-Prot
Match: MPV17_HUMAN (Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.467e-11
Identity = 47/171 (27.49%), Postives = 72/171 (42.11%), Query Frame = 3
Query:  168 WRKYLIQLQVRPLRTKAITAGVLAGCSDAIAQKI---SGVEKXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKA 671
            WR Y   L   P + + +TAG L G  D I+Q++    G+++              G+  P      K LD    G       KK+LL+Q  F+P     F+   G  + G        K+++DYP    T++ +WP V   NF   P  +R      VA  W  +++ KA
Sbjct:    4 WRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCGFVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVG-ALNGLSAQDNWAKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKA 173          
The following BLAST results are available for this feature:
BLAST of CK935728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
MPV17_MOUSE1.176e-1127.49Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=2 SV=1[more]
MPV17_XENLA1.535e-1126.44Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2[more]
SYM1_NEUCR2.619e-1128.99Protein sym-1 OS=Neurospora crassa GN=sym-1 PE=3 S... [more]
MPV17_HUMAN4.467e-1127.49Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_C06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935728 ID=CK935728; Name=CK935728; organism=Citrus sinensis; type=EST; length=913bp
GGGGGAGATCAAACCAAGTGAAACCAGCTTGTCATTTCCTTAACTAAATT
TCTTTATCATCGCATTGTGGTGACTCCTCTCTTGACATTGAGCTTTTGGA
GAGAAGTTATTGTTGATCATCACAGGCTTCACAACCGCCAGCCATGTCTA
ATATAGTCAAAGAAGCTTGGAGAAAATATCTTATACAACTCCAAGTTCGC
CCTTTGAGAACCAAGGCAATCACAGCTGGGGTACTAGCTGGGTGTAGTGA
TGCAATTGCCCAGAAGATTTCTGGGGTCGAAAAGCTTCAACTGAAAAGAT
TGCTGCTTCTTATGCTTTTTGACTTCGGATATGGAGTACCATTTGGGCAT
TTTCTTAACAAGTTCTTGGATGCCATTTTCAAGGGAAGGGACAACAAATC
TGTTGCAAAGAAGGTATTATTGGAGCAACTAATATTTTCCCCTTGGATCA
ACTTTCTGTTCATGACTTACTTTGGCTTGGTGGTTGAAGGAAAACCATGG
GGTTCAGTCATGAAGAAAGTTCGAAAGGACTATCCTGCTGTTCAGTTTAC
TTCATGGAAGGTTTGGCCAACTGTTACTTGGGTGAATTTCCAGTACGCCC
CTCAGCAATTCCGAGAACTCTTTTTCAGCTTGGTTGCCTCCTGCTGGGCT
ATCTTCATCAATTTGAAAGCTGAATCCGCTGCAATCAAGAAGGACTAGAT
GGAGGCTCCAAGGGGTCTAACCGGTCGAGTGATTTTCAAGTAGCCGAGTC
TAAATCCTGAGGAAAGGAGGGATTTAAAAAATTGGTTTCAGTTTTGGCCA
ACCTTTTGCCTTTTTAAAATTAGCTAAATATAACAAGTAGGACTAGATGG
AGGAATTGTTTTTTTAATTTGTCTTTGGGACTACTATTCAATGATTGGAT
GTCTGCATTTTAT
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