CK935731

Overview
NameCK935731
Unique NameCK935731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_STAAM (Protein grpE OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=grpE PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.707e-12
Identity = 43/187 (22.99%), Postives = 93/187 (49.73%), Query Frame = 3
Query:  333 NNKEGFHDGEQASGSEADQKHLLNLKTLIEAYKEAVSNGDEKAVSDIEARIFVVQNEKNELLRKVSSLSAEITSGKEKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGII 893
            N  E      +++  E + K   N+   +E  +E+  +  ++A+ +      + + +  +  +K++ L       +EK  RL A+FEN ++R +KE    ++     V+  +L  +D+ ERA LQI+ + E  K +    Q +++  +  ++      + T G+ FDP +H+A+ ++++ +F  G I
Sbjct:    3 NKDESVEKNTESTVEETNIKQ--NIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKD--QKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERA-LQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEI 184          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_STAAC (Protein grpE OS=Staphylococcus aureus (strain COL) GN=grpE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.707e-12
Identity = 43/187 (22.99%), Postives = 93/187 (49.73%), Query Frame = 3
Query:  333 NNKEGFHDGEQASGSEADQKHLLNLKTLIEAYKEAVSNGDEKAVSDIEARIFVVQNEKNELLRKVSSLSAEITSGKEKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGII 893
            N  E      +++  E + K   N+   +E  +E+  +  ++A+ +      + + +  +  +K++ L       +EK  RL A+FEN ++R +KE    ++     V+  +L  +D+ ERA LQI+ + E  K +    Q +++  +  ++      + T G+ FDP +H+A+ ++++ +F  G I
Sbjct:    3 NKDESVKKNTESTVEETNVKQ--NIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKD--QKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERA-LQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEI 184          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_STAA9 (Protein grpE OS=Staphylococcus aureus (strain JH9) GN=grpE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.707e-12
Identity = 43/187 (22.99%), Postives = 93/187 (49.73%), Query Frame = 3
Query:  333 NNKEGFHDGEQASGSEADQKHLLNLKTLIEAYKEAVSNGDEKAVSDIEARIFVVQNEKNELLRKVSSLSAEITSGKEKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGII 893
            N  E      +++  E + K   N+   +E  +E+  +  ++A+ +      + + +  +  +K++ L       +EK  RL A+FEN ++R +KE    ++     V+  +L  +D+ ERA LQI+ + E  K +    Q +++  +  ++      + T G+ FDP +H+A+ ++++ +F  G I
Sbjct:    3 NKDESVEKNTESTVEETNIKQ--NIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKD--QKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERA-LQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEI 184          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_STAA2 (Protein grpE OS=Staphylococcus aureus (strain JH1) GN=grpE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.707e-12
Identity = 43/187 (22.99%), Postives = 93/187 (49.73%), Query Frame = 3
Query:  333 NNKEGFHDGEQASGSEADQKHLLNLKTLIEAYKEAVSNGDEKAVSDIEARIFVVQNEKNELLRKVSSLSAEITSGKEKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGII 893
            N  E      +++  E + K   N+   +E  +E+  +  ++A+ +      + + +  +  +K++ L       +EK  RL A+FEN ++R +KE    ++     V+  +L  +D+ ERA LQI+ + E  K +    Q +++  +  ++      + T G+ FDP +H+A+ ++++ +F  G I
Sbjct:    3 NKDESVEKNTESTVEETNIKQ--NIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKD--QKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERA-LQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEI 184          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_STAA1 (Protein grpE OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=grpE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.707e-12
Identity = 43/187 (22.99%), Postives = 93/187 (49.73%), Query Frame = 3
Query:  333 NNKEGFHDGEQASGSEADQKHLLNLKTLIEAYKEAVSNGDEKAVSDIEARIFVVQNEKNELLRKVSSLSAEITSGKEKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGII 893
            N  E      +++  E + K   N+   +E  +E+  +  ++A+ +      + + +  +  +K++ L       +EK  RL A+FEN ++R +KE    ++     V+  +L  +D+ ERA LQI+ + E  K +    Q +++  +  ++      + T G+ FDP +H+A+ ++++ +F  G I
Sbjct:    3 NKDESVEKNTESTVEETNIKQ--NIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKD--QKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERA-LQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEI 184          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_BRECH (Protein grpE (Fragment) OS=Brevibacillus choshinensis GN=grpE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12
Identity = 37/119 (31.09%), Postives = 64/119 (53.78%), Query Frame = 3
Query:  540 AEITSGKEKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGIII 896
            A+    + +  R  AD EN R+R  KE+  +   A  +V+E LL ++D+FERA L    E+   + + T    +Y+Q V++       A+   G+PFDP VH+A+ + +   F  G+++
Sbjct:   39 AQAEEHQNRMLRTMADMENLRRRVRKEQEDLAKYASQKVVEELLPILDNFERA-LAADKESMTVESLLTGVDMVYRQMVQVFDKEGLVAIAAKGQPFDPHVHQAVMQTQDPAFESGVVV 156          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_OCEIH (Protein grpE OS=Oceanobacillus iheyensis GN=grpE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.144e-11
Identity = 41/125 (32.80%), Postives = 68/125 (54.40%), Query Frame = 3
Query:  522 KVSSLSAEITSGKEKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGIII 896
            +++ L  E      +  RLQA+F+N ++R+ KER A R     ++I  LL  +D+FERA LQ++  TE+ K I      +Y+Q  E + S     + T G+ FDP +H A+ + E E  +   ++
Sbjct:   45 EIAKLQQEKDETYNRLVRLQAEFDNYKRRTLKEREADRKYKSQDLITELLPAIDNFERA-LQVE-VTEENKSIIDGIMMVYRQLQEALTSQGVEPIKTEGEVFDPNLHHAVMQIEDENMDSNTVV 167          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_MEIRU (Protein grpE OS=Meiothermus ruber GN=grpE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.144e-11
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 3
Query:  501 EKNELLRKVSSLSAEITSGKEKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERAR--LQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEE 875
            E   L  +V  L AE+ + K K  RL ADFEN +KR  +E  A + + + + +  LL  +D  ERA     +KPE      +    + + + F   ++S+   AVP VG  FDP  HEAI   E EE
Sbjct:   19 EVERLKGEVEFLKAELEASKNKFLRLYADFENYKKRMVQELEAAQRNGKFDAVRALLGTLDDLERALGFASVKPE-----DLIPGVRSVLENFTRSLKSLGVEAVPGVGAEFDPRYHEAIGAVEGEE 140          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_CARHZ (Protein grpE OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=grpE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.144e-11
Identity = 50/163 (30.67%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  408 KTLIEAYKEAVSNGDEKAVSDIEARIFVVQNEKNELLRKVSSLSAEITSGKEKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGIII 896
            K L +  KE V    E+   D EA+ +  + E N+LL + + L       K +  RL ADF+N RKR+++E+  +      E +++LL ++D+FERA   +K +    +K+    +  ++Q +EI+   +  A+   G+PF+P +HEA+  E  E+  E  +I
Sbjct:   20 KNLEQEDKEEVVGPQEEQQID-EAKNW--EEEYNKLLDEHNRL-------KNQYLRLYADFDNYRKRTQREKEELLKYEGMEFLKKLLPVLDNFERA---LKEKDTDPQKVIEGVELTHRQLLEILNQHEVKAIEAQGQPFNPELHEALMVEVREDLEENTVI 169          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_ACIC5 (Protein grpE OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=grpE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.144e-11
Identity = 45/149 (30.20%), Postives = 76/149 (51.01%), Query Frame = 3
Query:  450 DEKAVSDIEARIFVVQNEKNELLRKVSSLSAEITSGKEKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGIII 896
            +E A+   E +  ++Q E   L  +  +  A+  + +++  RLQA+F+N+RKR  KER   R  +     E  L ++D+F+ A       T   +++    + I KQ  E +RS+    + TVG  FDP VHEA+   E E+  +  +I
Sbjct:   31 NEGALPAAEPQAQILQEEVERLRAERDAALADREAFQDRLARLQAEFDNARKREAKERSEFRDYSVASTAEAFLPVLDNFQLA----LASTGTAEQLRMGVELIVKQMDEALRSLSIIPIETVGAQFDPRVHEALEMVEREDVPDHQVI 175          
The following BLAST results are available for this feature:
BLAST of CK935731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
GRPE_STAAM6.707e-1222.99Protein grpE OS=Staphylococcus aureus (strain Mu50... [more]
GRPE_STAAC6.707e-1222.99Protein grpE OS=Staphylococcus aureus (strain COL)... [more]
GRPE_STAA96.707e-1222.99Protein grpE OS=Staphylococcus aureus (strain JH9)... [more]
GRPE_STAA26.707e-1222.99Protein grpE OS=Staphylococcus aureus (strain JH1)... [more]
GRPE_STAA16.707e-1222.99Protein grpE OS=Staphylococcus aureus (strain Mu3 ... [more]
GRPE_BRECH8.760e-1231.09Protein grpE (Fragment) OS=Brevibacillus choshinen... [more]
GRPE_OCEIH1.144e-1132.80Protein grpE OS=Oceanobacillus iheyensis GN=grpE P... [more]
GRPE_MEIRU1.144e-1135.43Protein grpE OS=Meiothermus ruber GN=grpE PE=3 SV=... [more]
GRPE_CARHZ1.144e-1130.67Protein grpE OS=Carboxydothermus hydrogenoformans ... [more]
GRPE_ACIC51.144e-1130.20Protein grpE OS=Acidobacterium capsulatum (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004552_C09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935731 ID=CK935731; Name=CK935731; organism=Citrus sinensis; type=EST; length=897bp
GCCGGGGGGAAGGCAGCACCCAGCTGNNNAGCGAAAACCCTTTGGTGTGA
ATATTGAAAACATAATAAAAGCTAAATTGAGGAAGAGAAAACAGCTCTTG
ACTAAAAGAGTAGGCGTTAATAAATTATCCATCAGTCGAAGTCAATCGAA
TGGCTGTTGCGCTCTCAAACCACTCCTTCTTAGCTTCTCCGCGCCTTTCT
TCTTCTGCTTCTCTGTATAGACACAGAAAAACCCTAGCCCTTCGCTCTTT
CAATCGGAGACCTCCTCTCTTAAACCTAGAACTTCCCCTTCACAACAATA
CCGGGCCTGGCTTCAAGTCTTTCTTCGCTATAAATAACAAGGAGGGTTTC
CATGATGGTGAACAAGCCTCTGGAAGTGAAGCAGATCAGAAACATCTGTT
GAATCTGAAGACGTTGATTGAAGCCTACAAGGAGGCTGTGTCTAATGGAG
ATGAAAAGGCTGTATCTGATATTGAAGCTCGAATTTTTGTAGTACAAAAT
GAGAAGAATGAATTGTTACGCAAAGTTTCCTCACTATCAGCGGAGATAAC
CTCTGGGAAGGAGAAATGCACCCGCTTGCAAGCAGATTTTGAAAATTCTA
GGAAGAGATCAGAGAAGGAGAGGCTGGCTGTAAGGTCTGATGCCCAGGGC
GAAGTGATTGAGAGACTTTTGCTTTTGGTGGACAGTTTTGAGAGAGCGAG
ACTGCAAATCAAACCAGAGACAGAAAAGGAGAAAAAGATAGATACAAGTT
ATCAAGGTATATATAAGCAATTTGTGGAGATCATGAGGAGCATGCAAGCA
GCTGCAGTGCCAACTGTGGGAAAACCTTTTGATCCCGCGGTGCATGAGGC
CATTGCACGAGAGGAATCTGAAGAGTTCAATGAAGGGATTATTATTG
back to top