CK935731

Overview
NameCK935731
Unique NameCK935731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_STAAB (Protein grpE OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=grpE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.494e-11
Identity = 39/164 (23.78%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  402 NLKTLIEAYKEAVSNGDEKAVSDIEARIFVVQNEKNELLRKVSSLSAEITSGKEKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGII 893
            N+   +E  +E+  +  ++A+ +      + + +  +  +K++ L       +EK  RL A+FEN ++R +KE    ++     V+  +L  +D+ ERA LQI+ + E  K +    Q +++  +  ++      + T G+ FDP +H+A+ ++++ +F  G I
Sbjct:   24 NIDDSVEQTEESKGHLQDEAIEETSDENVIEEIDPKD--QKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERA-LQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEI 184          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_STACT (Protein grpE OS=Staphylococcus carnosus (strain TM300) GN=grpE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11
Identity = 50/189 (26.46%), Postives = 91/189 (48.15%), Query Frame = 3
Query:  327 AINNKEGFHDGEQASGSEADQKHLLNLKTLIEAYKEAVSNGDEKAVSDIEARIFVVQNEKNELLRKVSSLSAEITSGKEKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGII 893
            ++NN+E F + E  +  +++    +  KT   A ++ V N D  AV D E              +++  L  E+   +EK  RL A+FEN ++R + E   +++     V+  +L  +D+ ERA LQI+ E E  K +    Q +Y+  +  +       +  VG+ FDP  H+A+ ++E + F    +
Sbjct:    7 SVNNEE-FAEKEDNTAKDSNTDEQIE-KT---ASEDDVQN-DSSAVDDKE--------------KEIQQLKEEVNEQEEKYLRLYAEFENYKRRIQNENQTLKTYQAQCVLTDILPTIDNIERA-LQIEGEDESFKSLQKGVQMVYESLLRALEENGLEKIEAVGQQFDPNFHQAVMQDEDDSFESNAV 174          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_METTP (Protein grpE OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=grpE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  561 EKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGIII 896
            E+  R +A+ +N  KR+ +ER  +   A   +I++LL+ +DS E+A            K D   + +Y Q ++IMRS     +  VGK FDP VHEA+ + ES+E  +GI++
Sbjct:   53 EQLLRCRAELDNVIKRNSREREELARFASEAIIKKLLVFLDSLEQAA-----------KHDEGAKALYDQLLDIMRSEGLEPIDAVGKKFDPFVHEAMMQVESQEAEDGIVV 153          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_ALKOO (Protein grpE OS=Alkaliphilus oremlandii (strain OhILAs) GN=grpE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11
Identity = 49/153 (32.03%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  453 EKAVSDIEARIFVVQNEKN---ELLRKVSSLSAEITSGKEKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGI---YKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGII 893
            E   S++EA +  +++ K    +L +K++  +A+      +  RLQADF N +KR EKE+  +   A  ++   LL ++D+FERA       TEK ++ D+  QGI   YKQ ++ +       +  + KPFD  +H A+ +EESE  +  +I
Sbjct:   16 ESVDSNLEATVEEMESTKGTSEDLEQKLAEKTAQYEDIFSQFQRLQADFTNYKKRVEKEKGDIYLYANEKIALDLLNIIDNFERA----IQSTEKTEENDSLLQGISLVYKQLLDTLTKHGVEEIEAMEKPFDMNLHYAVMQEESEGASNYVI 164          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_METTH (Protein grpE OS=Methanobacterium thermoautotrophicum GN=grpE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  495 QNEKNELLRKVSSLSAEITSGKEKCT-------RLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGIII 896
            Q E  EL  ++  L  EI   +E+         RLQADF+N +K+ EK+ L +  +A   +I +LL + +  ERA        E +       + IY++F + +     + +P  G+ FDP +HEA+  E+ + + +GIII
Sbjct:   16 QKELEELRERLKDLENEIKKKEEEVREYTSHLQRLQADFDNYKKQMEKQELEIIKNANERLILKLLDVYEDLERA-------IENQDSSMDGLEVIYRKFRDTLTKEGLSEIPAEGEKFDPFLHEAVMVEDHDGYEDGIII 149          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_RUBXD (Protein grpE OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=grpE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11
Identity = 44/141 (31.21%), Postives = 71/141 (50.35%), Query Frame = 3
Query:  474 EARIFVVQNEKNELLRKVSSLSAEITSGKEKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGIII 896
            EA   V + E  +L  ++ ++  E     +   RL+A+FENSRKR E+E   +R  A   ++  LL ++D+ +RA        E E  I    +    Q  +++       + + G+ FDP+VHEA+  + SEE  EG II
Sbjct:   51 EAGKEVREEELAKLREELEAVRRERDEYLDALRRLKAEFENSRKRMEREAQRIREAAAERLVAELLPVLDNLDRA-------LEAEGDIREGVRATRDQLTDVLSREGLTPIASDGQHFDPSVHEAVMSQPSEEHEEGTII 184          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_BACSH (Protein grpE OS=Bacillus sphaericus GN=grpE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 43/164 (26.22%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  408 KTLIEAYKEAVSNGDEKAVSDIEARIFVVQNEKNELLRKVSSLSAEITSGKE-KCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGIII 896
            K L++   +A +  +E   S+++  I +   E+ E    V+ L A++   +E +  RL+ADF+N R+R + +  A        ++  LL ++D+FERA LQ++  +E+   I    + +Y+  +E         +   G+ FDP +H+A+ +E+  E   G+++
Sbjct:   15 KDLVQGDVQAETATEEVERSEVQEEIELSVEEQYEA--NVAELQAKLDDDEENRHLRLRADFDNMRRRQQLDGEAAEKYRAQSLLSDLLPVLDNFERA-LQVETTSEETASIIKGIEMVYRSLLEATVFEGLQVIKAEGEQFDPNIHQAVMQEQDSEKETGVVL 175          
BLAST of CK935731 vs. ExPASy Swiss-Prot
Match: GRPE_CHLFF (Protein grpE OS=Chlamydophila felis (strain Fe/C-56) GN=grpE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11
Identity = 38/133 (28.57%), Postives = 71/133 (53.38%), Query Frame = 3
Query:  498 NEKNELLRKVSSLSAEITSGKEKCTRLQADFENSRKRSEKERLAVRSDAQGEVIERLLLLVDSFERARLQIKPETEKEKKIDTSYQGIYKQFVEIMRSMQAAAVPTVGKPFDPAVHEAIAREESEEFNEGIII 896
            NE  +L +++++L AE+    +K   + A+ EN+RKR +KER  +   A    +   L+ ++S E+A       +++ K     +  I +QF ++          +VG+ F+P +HEA+  EE+ +  EGII+
Sbjct:   20 NEIQDLQQEIATLKAELKEKNDKYLMVLAESENARKRMQKERQEMMQYAVENALIDFLVPIESMEKALGFASQMSDEVKNWALGFNMILQQFKQVFEEKGIVEYSSVGQKFNPFLHEAVETEETTKVPEGIIV 152          
The following BLAST results are available for this feature:
BLAST of CK935731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
GRPE_STAAB1.494e-1123.78Protein grpE OS=Staphylococcus aureus (strain bovi... [more]
GRPE_STACT2.549e-1126.46Protein grpE OS=Staphylococcus carnosus (strain TM... [more]
GRPE_METTP2.549e-1134.82Protein grpE OS=Methanosaeta thermophila (strain D... [more]
GRPE_ALKOO2.549e-1132.03Protein grpE OS=Alkaliphilus oremlandii (strain Oh... [more]
GRPE_METTH3.329e-1130.50Protein grpE OS=Methanobacterium thermoautotrophic... [more]
GRPE_RUBXD5.678e-1131.21Protein grpE OS=Rubrobacter xylanophilus (strain D... [more]
GRPE_BACSH7.416e-1126.22Protein grpE OS=Bacillus sphaericus GN=grpE PE=3 S... [more]
GRPE_CHLFF9.685e-1128.57Protein grpE OS=Chlamydophila felis (strain Fe/C-5... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_C09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935731 ID=CK935731; Name=CK935731; organism=Citrus sinensis; type=EST; length=897bp
GCCGGGGGGAAGGCAGCACCCAGCTGNNNAGCGAAAACCCTTTGGTGTGA
ATATTGAAAACATAATAAAAGCTAAATTGAGGAAGAGAAAACAGCTCTTG
ACTAAAAGAGTAGGCGTTAATAAATTATCCATCAGTCGAAGTCAATCGAA
TGGCTGTTGCGCTCTCAAACCACTCCTTCTTAGCTTCTCCGCGCCTTTCT
TCTTCTGCTTCTCTGTATAGACACAGAAAAACCCTAGCCCTTCGCTCTTT
CAATCGGAGACCTCCTCTCTTAAACCTAGAACTTCCCCTTCACAACAATA
CCGGGCCTGGCTTCAAGTCTTTCTTCGCTATAAATAACAAGGAGGGTTTC
CATGATGGTGAACAAGCCTCTGGAAGTGAAGCAGATCAGAAACATCTGTT
GAATCTGAAGACGTTGATTGAAGCCTACAAGGAGGCTGTGTCTAATGGAG
ATGAAAAGGCTGTATCTGATATTGAAGCTCGAATTTTTGTAGTACAAAAT
GAGAAGAATGAATTGTTACGCAAAGTTTCCTCACTATCAGCGGAGATAAC
CTCTGGGAAGGAGAAATGCACCCGCTTGCAAGCAGATTTTGAAAATTCTA
GGAAGAGATCAGAGAAGGAGAGGCTGGCTGTAAGGTCTGATGCCCAGGGC
GAAGTGATTGAGAGACTTTTGCTTTTGGTGGACAGTTTTGAGAGAGCGAG
ACTGCAAATCAAACCAGAGACAGAAAAGGAGAAAAAGATAGATACAAGTT
ATCAAGGTATATATAAGCAATTTGTGGAGATCATGAGGAGCATGCAAGCA
GCTGCAGTGCCAACTGTGGGAAAACCTTTTGATCCCGCGGTGCATGAGGC
CATTGCACGAGAGGAATCTGAAGAGTTCAATGAAGGGATTATTATTG
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