CK935735

Overview
NameCK935735
Unique NameCK935735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP3_PONAB (Actin-related protein 3 OS=Pongo abelii GN=ACTR3 PE=2 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 2.161e-42
Identity = 97/243 (39.92%), Postives = 134/243 (55.14%), Query Frame = 3
Query:  156 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSS 836
            V D GTG  K G+AG+  P+ + PS         VG      VM G+   D ++GDEA  K    T K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFE+FNVP +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +   I  + +AGRD+T  + ++L +R          E  + +KE+ +YV  D  +E     +  S
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYAT-KWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGS 250          
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP3_MOUSE (Actin-related protein 3 OS=Mus musculus GN=Actr3 PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 2.161e-42
Identity = 97/243 (39.92%), Postives = 134/243 (55.14%), Query Frame = 3
Query:  156 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSS 836
            V D GTG  K G+AG+  P+ + PS         VG      VM G+   D ++GDEA  K    T K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFE+FNVP +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +   I  + +AGRD+T  + ++L +R          E  + +KE+ +YV  D  +E     +  S
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYAT-KWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGS 250          
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP3_HUMAN (Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 2.161e-42
Identity = 97/243 (39.92%), Postives = 134/243 (55.14%), Query Frame = 3
Query:  156 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSS 836
            V D GTG  K G+AG+  P+ + PS         VG      VM G+   D ++GDEA  K    T K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFE+FNVP +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +   I  + +AGRD+T  + ++L +R          E  + +KE+ +YV  D  +E     +  S
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYAT-KWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGS 250          
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP3_DROME (Actin-related protein 3 OS=Drosophila melanogaster GN=Arp66B PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 2.161e-42
Identity = 95/234 (40.60%), Postives = 131/234 (55.98%), Query Frame = 3
Query:  156 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQE 809
            V D GTG  K GFAG+  P+ + PS         VG      +  G+   D ++GDEA    G  ++KYP+ HG+V +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFETFNVP +Y+A+QAVL+L AS  +        TGIV+DSGDGV+H +P+ EGY +   I  + +AGR++T  +  +L ER          E  + +KEK  Y+  D  +E
Sbjct:    9 VIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVGDTNTRRITKGIEDLDFFIGDEAFDATGY-SIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFETFNVPGLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKE 241          
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP3_BOVIN (Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 2.161e-42
Identity = 97/243 (39.92%), Postives = 134/243 (55.14%), Query Frame = 3
Query:  156 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSS 836
            V D GTG  K G+AG+  P+ + PS         VG      VM G+   D ++GDEA  K    T K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFE+FNVP +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +   I  + +AGRD+T  + ++L +R          E  + +KE+ +YV  D  +E     +  S
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYAT-KWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGS 250          
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP3_SCHPO (Actin-related protein 3 OS=Schizosaccharomyces pombe GN=act2 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.815e-42
Identity = 101/254 (39.76%), Postives = 141/254 (55.51%), Query Frame = 3
Query:  150 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG---------MGQK--------------DAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTT--TAEREIVRDMKEKLAYVALDYEQE 809
            P++ DNGTG  K G+AG+DAP  VFP+++   R  G   G         M  K              D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE PLNP  NRE   +IMFE+FN   +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +  +I  + LAGRD+T  +  +L +R    ++  TAER     +KE+  YV  D  +E
Sbjct:    7 PIIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKE 254          
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP3_TAKRU (Actin-related protein 3 OS=Takifugu rubripes GN=actr3 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.288e-42
Identity = 97/243 (39.92%), Postives = 133/243 (54.73%), Query Frame = 3
Query:  156 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSS 836
            V D GTG  K G+AG+  P+ + PS         VG      +M G+   D ++GDEA  K    T K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFE+FNVP +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +   I  + +AGRD+T    ++L ER          E  + +KE+ +YV  D  +E     +  S
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIMPSCIAIKESSKVGDQAQRRMMRGVDDLDFFIGDEAIDKPPYAT-KWPIRHGIVEDWDLMERFMEQIIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFTQQLLREREVGIPPEQSLETAKAVKERFSYVCPDLVKEFNKYDTDGS 250          
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP3_CHICK (Actin-related protein 3 OS=Gallus gallus GN=ACTR3 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.401e-41
Identity = 94/234 (40.17%), Postives = 131/234 (55.98%), Query Frame = 3
Query:  156 VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQE 809
            V D GTG  K G+AG+  P+ + PS +       V        + G+   D ++GDEA  K    T K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFE+FNVP +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +   I  + +AGRD+T  + ++L ER          E  + +KE+ +YV  D  +E
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVVDQAQRRVLKGVDDLDFFIGDEAIEKPTYAT-KWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAVKERFSYVCPDLVKE 241          
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP4_ARATH (Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.830e-41
Identity = 105/310 (33.87%), Postives = 160/310 (51.61%), Query Frame = 3
Query:  126 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG---------------------RPRHTGVMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG------YMF-------------------TTTA-----EREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFR 899
            M   +++  +V D G+   KAG+AG+DAP+AVFPS++G                         T       ++  YVG +A S +R  + +  PI+ GIVS+WD ++ IW H F + L + P EHP+LL E PLN +  REK  ++MFE + VPA+++A   VL+ +A+GR T +V+D G G +   P+++GY L  A++   L G  LTD L+K L  +G      Y F                   TT +     +R IV D+K+ +  V    +   +    S+    +YELPDGQ + IGA+RF+
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKTESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEVRAGEFQVEDVDIPDTTESYKLFCQRMIVGDIKDSICRVP---DTPYDDKSYSNIPTTSYELPDGQTLEIGADRFK 307          
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSJ (Actin-related protein 4 OS=Oryza sativa subsp. japonica GN=ARP4 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.186e-40
Identity = 103/313 (32.91%), Postives = 155/313 (49.52%), Query Frame = 3
Query:  126 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG-------------------------VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG------YMF-----------------TTTAE-------REIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFR 899
            M   +++  +V D G+   KAG+AGDD P+AVFPS+VG    TG                         V     ++  YVG E + +R  + +  P++ G V++WD ++ IW+H F   L + PEEHP+L+ E   N    REK  ++MFE + VPA+++A  AVL+ +ASGR T +V+DSG G +    +++GY L  ++    + G  LTD +MK L  +G      Y F                   T E       R I  D+KE +  V      E+  A   ++   +YELPDGQ I +GA+RF+
Sbjct:    1 MYGGDEVSAIVIDVGSYSCKAGYAGDDTPKAVFPSVVGSIEQTGETDEAKADKEAEAASDSKNGAKPMDVDKAKTKRKLYVGQELEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRLLINPEEHPMLIAEPSTNTGQQREKAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTVVAAVHDGYVLQKSVATSPIGGEFLTDCMMKSLESKGVVIRPRYSFKKKEVGPGEYKVVDLDLPNTTESYKLYCMRAIASDIKESVCRVPDTAFDEVAYANVPTT---SYELPDGQTIEVGADRFK 310          
The following BLAST results are available for this feature:
BLAST of CK935735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 487
Match NameE-valueIdentityDescription
ARP3_PONAB2.161e-4239.92Actin-related protein 3 OS=Pongo abelii GN=ACTR3 P... [more]
ARP3_MOUSE2.161e-4239.92Actin-related protein 3 OS=Mus musculus GN=Actr3 P... [more]
ARP3_HUMAN2.161e-4239.92Actin-related protein 3 OS=Homo sapiens GN=ACTR3 P... [more]
ARP3_DROME2.161e-4240.60Actin-related protein 3 OS=Drosophila melanogaster... [more]
ARP3_BOVIN2.161e-4239.92Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=... [more]
ARP3_SCHPO4.815e-4239.76Actin-related protein 3 OS=Schizosaccharomyces pom... [more]
ARP3_TAKRU6.288e-4239.92Actin-related protein 3 OS=Takifugu rubripes GN=ac... [more]
ARP3_CHICK1.401e-4140.17Actin-related protein 3 OS=Gallus gallus GN=ACTR3 ... [more]
ARP4_ARATH1.830e-4133.87Actin-related protein 4 OS=Arabidopsis thaliana GN... [more]
ARP4_ORYSJ1.186e-4032.91Actin-related protein 4 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_B06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935735 ID=CK935735; Name=CK935735; organism=Citrus sinensis; type=EST; length=903bp
GGGGACTACATTTTTAATCTCTCAGCAGTACCAAATACAGAGCGATAGAG
AGAATCGACACTCTCAGCTAGACTCCATCTTCGAATTTTTCTCTCGTCGT
CTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCTGAGGATATTCAAC
CCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGA
GATGATGCCCCGAGGGCAGTATTCCCTAGTATTGTTGGTAGGCCTCGACA
CACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCCTATGTTGGTGATG
AGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATACCCAATTGAGCAC
GGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCATCATACCTT
CTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCTTCTCACTG
AGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATG
TTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAGGCCGTTCT
ATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGATTCTGGTG
ATGGTGTGTCTCATACTGTACCAATCTATGAGGGATATGCCCTTCCTCAT
GCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGATGCATTGAT
GAAGATTCTTACTGAGAGAGGTTACATGTTTACCACCACAGCCGAACGGG
AAATTGTCCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCCTAGACTAT
GAGCAAGAACTTGAGACTGCCAAGAGCAGCTCATCTGTTGAGAAGAACTA
TGAGCTGCCTGATGGCCAGATCATCACCATTGGAGCTGAAAGATTCCGTT
GCC
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