CK935735

Overview
NameCK935735
Unique NameCK935735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP5_DROPS (Actin-related protein 5 OS=Drosophila pseudoobscura pseudoobscura GN=Arp5 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.010e-13
Identity = 55/243 (22.63%), Postives = 114/243 (46.91%), Query Frame = 3
Query:  153 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHT-----------GVMVGMGQK---DAYVGDEAQSKRGILT-LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSL--YASGR---TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQEL 812
            LV DNG+   + G+     P   F +++ +PR             G    +  +   +  VG++  +   +   LK P E  I++NW+  E+I+ + F  ++    E+   +P++LTEA  NP   R+ M++++FE + +PA+   I A+ S   Y + R   +  +++  G   +H +P+  G      + RL++ G  +   L+ ++  +  +         +  +  +  ++A+DY +EL
Sbjct:    8 LVIDNGSYECRVGWNNTKEPALRFRNVLTKPRKDRKKEAIPDTTDGAPTPVAAEVPAEIQVGNDITNIEAVRAHLKSPFERNIITNWNHQEQIFDYIF-TKMGFEGEQSIANPIVLTEALANPNFCRQNMSELLFECYGIPAVSYGIDALYSWEHYQNRRKKVSDALIISLGYSTTHVIPVLNGKLQLQHVRRLNVGGYHIITYLLCLMQMKYPVHLNAISISRMEKLVHEHCHIAVDYREEL 249          
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSJ (Actin-related protein 8 OS=Oryza sativa subsp. japonica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.366e-12
Identity = 53/179 (29.61%), Postives = 88/179 (49.16%), Query Frame = 3
Query:  396 TFYNELRVAPEEHPVLLT----------EAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFR 899
            T Y  ++V P   P+++            A  + K  R+ +  ++F+  NVPA+    QAVL+LYA+ RT+GIV++ G   +  VPI++G  +    +  +      LT  L +++ +R   F +      VR +KEKL YVA DYE     A+     + + E+      T+  ERF+
Sbjct:  188 TIYTRMQVKPSTQPIIVVLPLCHSDDTESARASRKQYRDTLYSVLFD-MNVPAVCSVDQAVLALYAAKRTSGIVVNIGFNATSIVPIFQGRVMHEIGVETVGQGALKLTGFLKELMQQRNITFESL---YTVRTIKEKLCYVAADYE-----AEKRKDTQASCEVDGEGWFTLSEERFK 357          
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSI (Actin-related protein 8 OS=Oryza sativa subsp. indica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.366e-12
Identity = 53/179 (29.61%), Postives = 88/179 (49.16%), Query Frame = 3
Query:  396 TFYNELRVAPEEHPVLLT----------EAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFR 899
            T Y  ++V P   P+++            A  + K  R+ +  ++F+  NVPA+    QAVL+LYA+ RT+GIV++ G   +  VPI++G  +    +  +      LT  L +++ +R   F +      VR +KEKL YVA DYE     A+     + + E+      T+  ERF+
Sbjct:  188 TIYTRMQVKPSTQPIIVVLPLCHSDDTESARASRKQYRDTLYSVLFD-MNVPAVCSVDQAVLALYAAKRTSGIVVNIGFNATSIVPIFQGRVMHEIGVETVGQGALKLTGFLKELMQQRNITFESL---YTVRTIKEKLCYVAADYE-----AEKRKDTQASCEVDGEGWFTLSEERFK 357          
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ACT4_LYTPI (Actin, cytoskeletal 4 (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.856e-12
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 3
Query:  771 EKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFR 899
            EKL YVALD+EQE++TA SSSS+EK+YELPDGQ+IT G ERFR
Sbjct:    1 EKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITTGNERFR 43          
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP6_DEBHA (Actin-like protein ARP6 OS=Debaryomyces hansenii GN=ARP6 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.511e-11
Identity = 68/260 (26.15%), Postives = 107/260 (41.15%), Query Frame = 3
Query:  147 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDE---AQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFY----NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN-------VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIG 884
            Q  V DNG+  +KAGF+  DAP           +H   +        YVG+E     +    +  K P +HG + +W+  + +W +TF     N+   A   H + LTE P           QI+FE +         PA  V    + S  +      +V+DSG   +  VPI         + +L + G  L   L +I++ R Y      E  ++  +KEK  ++A D+E+ L   K        + LPD +  T G
Sbjct:    4 QYFVIDNGSYNIKAGFSNQDAP----------IKHQNALSKARDGLIYVGNEYLVQTNNYSGMIFKRPYDHGHLISWETEKAVWDYTFNKASPNQELDASITH-LTLTETPFQLPQLSMNTDQIVFEEYGFNEYYRCAPASLVPWSNLGSSESKNNDFTLVVDSGYSGTWIVPIIYQNVYWKGVKKLPIGGAALNGLLREIISFRHY--DIADEPVLINTIKEKTCFMATDFEKSLANRK---KYRCEFILPDFKTTTTG 247          
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP9_SCHPO (SWI/SNF and RSC complexes subunit arp9 OS=Schizosaccharomyces pombe GN=arp9 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.973e-11
Identity = 59/203 (29.06%), Postives = 92/203 (45.32%), Query Frame = 3
Query:  339 PIEHGIVSNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKE------KLAYVALDYEQELETAK-------SSSSVEKNYELPD-GQIITIGAER 893
            PI+ G V +W+ ++  W H  Y+ L   P +    +PV L         +RE  TQ  FE   VP   +A + ++ LYA G   G+V+D G   +   PI +G  +  A  +L L GR +T  L  +L E      ++ +     D+ E      K + +A     E +TAK       S+++VE+     D G+II  G  R
Sbjct:  113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRESLPTLKSSGQYVSKEDITELFAEQVKCSEIAQVVRDEQDTAKDPVKALTSTNNVEEEDPAEDIGKIIASGQTR 314          
BLAST of CK935735 vs. ExPASy Swiss-Prot
Match: ARP8_ARATH (Actin-related protein 8 OS=Arabidopsis thaliana GN=ARP8 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.973e-11
Identity = 56/179 (31.28%), Postives = 88/179 (49.16%), Query Frame = 3
Query:  396 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFR 899
            T +  ++V P   P++++  PL       + KA+R ++   +F      NVPA+    QAVL+LYA+ RT+GIV++ G  V   +PI  G  +    +  +      LT  L + + E    F +      VR +KEKL YVALDY+ EL     S   + + E+      T+  ERF+
Sbjct:  182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQAVLALYAARRTSGIVVNIGFQVITILPILHGKVMRQVGVEVIGFGALKLTGFLKEKMQENNISFQSL---YTVRTLKEKLCYVALDYKAEL-----SKDTQASVEVSGEGWFTLSKERFQ 351          
The following BLAST results are available for this feature:
BLAST of CK935735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 487
Match NameE-valueIdentityDescription
ARP5_DROPS8.010e-1322.63Actin-related protein 5 OS=Drosophila pseudoobscur... [more]
ARP8_ORYSJ1.366e-1229.61Actin-related protein 8 OS=Oryza sativa subsp. jap... [more]
ARP8_ORYSI1.366e-1229.61Actin-related protein 8 OS=Oryza sativa subsp. ind... [more]
ACT4_LYTPI8.856e-1276.74Actin, cytoskeletal 4 (Fragment) OS=Lytechinus pic... [more]
ARP6_DEBHA1.511e-1126.15Actin-like protein ARP6 OS=Debaryomyces hansenii G... [more]
ARP9_SCHPO1.973e-1129.06SWI/SNF and RSC complexes subunit arp9 OS=Schizosa... [more]
ARP8_ARATH1.973e-1131.28Actin-related protein 8 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_B06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935735 ID=CK935735; Name=CK935735; organism=Citrus sinensis; type=EST; length=903bp
GGGGACTACATTTTTAATCTCTCAGCAGTACCAAATACAGAGCGATAGAG
AGAATCGACACTCTCAGCTAGACTCCATCTTCGAATTTTTCTCTCGTCGT
CTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCTGAGGATATTCAAC
CCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGA
GATGATGCCCCGAGGGCAGTATTCCCTAGTATTGTTGGTAGGCCTCGACA
CACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCCTATGTTGGTGATG
AGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATACCCAATTGAGCAC
GGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCATCATACCTT
CTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCTTCTCACTG
AGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATG
TTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAGGCCGTTCT
ATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGATTCTGGTG
ATGGTGTGTCTCATACTGTACCAATCTATGAGGGATATGCCCTTCCTCAT
GCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGATGCATTGAT
GAAGATTCTTACTGAGAGAGGTTACATGTTTACCACCACAGCCGAACGGG
AAATTGTCCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCCTAGACTAT
GAGCAAGAACTTGAGACTGCCAAGAGCAGCTCATCTGTTGAGAAGAACTA
TGAGCTGCCTGATGGCCAGATCATCACCATTGGAGCTGAAAGATTCCGTT
GCC
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