CK935744

Overview
NameCK935744
Unique NameCK935744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6178 contig Csv1_Contig6178:3..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.364e-18
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNGT-IQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            K L+AGG+AGAVSRT  APL+RLK+++QV   H  K N   I GLK + +  G R L++GNG N  +I P +A+KF++YEQ        Y+    +E  +L    R  AG+ AG  A ++ YPM++++
Sbjct:  196 KQLLAGGMAGAVSRTGTAPLDRLKVMMQV---HGSKGNANIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQ--------YKKLFTSESGKLGTAERFIAGSLAGATAQTSIYPMEVLK 312          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: SCM1A_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-A PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.782e-18
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNGT-IQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            K L+AGG+AGAVSRT  APL+RLK+++QV   H  K N   I GLK + +  G R L++GNG N  +I P +A+KF++YEQ        Y+    +E  +L    R  AG+ AG  A ++ YPM++++
Sbjct:  196 KHLLAGGMAGAVSRTGTAPLDRLKVMMQV---HGTKGNSNIITGLKQMVKEGGVRSLWRGNGVNVIKIAPETAMKFWAYEQ--------YKKLFTSESGKLGTAERFIAGSLAGATAQTSIYPMEVLK 312          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: CMC3_CAEBR (Probable calcium-binding mitochondrial carrier CBG00135 OS=Caenorhabditis briggsae GN=CBG00135 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.782e-18
Identity = 53/127 (41.73%), Postives = 78/127 (61.42%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            + LVAGGVAGA+SRT  AP +R+K+ LQV +  + K  G +  +  +    G +  ++GNG N  +I P SA+KF SY+Q  + I    Q + G   AELT   RL AG+ AG I+ +A YPM++++
Sbjct:  247 RHLVAGGVAGAMSRTCTAPFDRIKVYLQVNSTKTNKL-GVVSCVHLLHAEGGLKSFWRGNGINVIKIAPESAMKFMSYDQIKRWI----QEYKGG--AELTTYERLFAGSSAGAISQTAIYPMEVMK 366          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: CMC2_CAEEL (Putative calcium-binding mitochondrial carrier F55A11.4 OS=Caenorhabditis elegans GN=F55A11.4 PE=5 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.327e-18
Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            + LVAGG AGAVSRT  AP +R+K+ LQV N       G +  LK +    G +  ++GNG N  +I P SA+KF  Y+Q  +    L Q   GNE  E++   RL AG+ AG I+ S  YPM++++
Sbjct:  250 RHLVAGGAAGAVSRTCTAPFDRIKVYLQV-NSSKTNRLGVMSCLKLLHAEGGIKSFWRGNGINVIKIAPESAIKFMCYDQLKR----LIQKKKGNE--EISTFERLCAGSAAGAISQSTIYPMEVMK 369          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: SCMC2_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Bos taurus GN=SLC25A25 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.039e-18
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNG--TIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            + LVAGG AGAVSRT  APL+RLK+L+QV   H+ + N    + G   + R  G R L++GNG N  +I P SA+KF +YEQ  + I        G++   L    RL AG+ AG IA S+ YPM++++
Sbjct:  188 RHLVAGGGAGAVSRTCTAPLDRLKVLMQV---HASRSNNMCIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLI--------GSDQETLRIHERLVAGSLAGAIAQSSIYPMEVLK 305          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.039e-18
Identity = 51/127 (40.16%), Postives = 77/127 (60.63%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            + L+AGGVAGAVSRT+ APL+RLK+++QV    S K N    G + + +  G R L++GNGTN  +I P +AVKF++YEQ        Y+     E  ++    R  +G+ AG  A +  YPM++++
Sbjct:  196 RQLLAGGVAGAVSRTSTAPLDRLKVMMQVHGSKSAKMN-IYGGFQQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQ--------YKKLLTEEGQKIGTFERFVSGSMAGATAQTFIYPMEVLK 313          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: S2542_XENLA (Solute carrier family 25 member 42 OS=Xenopus laevis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.039e-18
Identity = 56/144 (38.89%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  371 SICKSLVAGGVAGAVSRTAVAPLERLKILLQV-QNPHSIKYNGTIQGLKYIWRT---EGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVRGEANXSDRKV 790
            S+  SL +G +AGAV++TAVAPL+R KI+ QV  N  S K     +  + I+RT   +GF  L++GN     R++P +A++F ++EQ  K    L   + G + + LTP+ RL AGA AG  A   TYP+D+VR     + +++
Sbjct:   35 SVLNSLTSGALAGAVAKTAVAPLDRTKIIFQVSSNRFSAK-----EAYRLIYRTYMNDGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKK----LLGSYYGFQGSALTPIPRLLAGALAGTTATLLTYPLDLVRARMAVTQKEM 169          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.969e-18
Identity = 51/127 (40.16%), Postives = 77/127 (60.63%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            + L+AGG+AGAVSRT+ APL+RLKI++QV    S K N    G + + +  G R L++GNGTN  +I P +AVKF++YEQ        Y+     E  ++    R  +G+ AG  A +  YPM++++
Sbjct:  196 RQLLAGGIAGAVSRTSTAPLDRLKIMMQVHGSKSDKMN-IFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQ--------YKKLLTEEGQKIGTFERFISGSMAGATAQTFIYPMEVMK 313          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.184e-18
Identity = 51/127 (40.16%), Postives = 77/127 (60.63%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            + L+AGGVAGAVSRT+ APL+RLK+++QV    S+   G   G + + +  G R L++GNGTN  +I P +AVKF++YEQ        Y+     E  +L    R  +G+ AG  A +  YPM++++
Sbjct:  196 RQLLAGGVAGAVSRTSTAPLDRLKVMMQVHGSKSMNIFG---GFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQ--------YKKLLTEEGQKLGTFERFISGSMAGATAQTFIYPMEVLK 311          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: GDC_HUMAN (Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 5.184e-18
Identity = 52/127 (40.94%), Postives = 78/127 (61.42%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            +S +AGG+AG  ++T VAPL+R+K+LLQ  N H  K+ G    L+ + + EGF GL+KGNG    RI P  A++F ++E   K ++      +G+       + RL AG+ AG+ A+  TYP+DMVR
Sbjct:   38 RSFLAGGIAGCCAKTTVAPLDRVKVLLQAHN-HHYKHLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEH-YKTLITTKLGISGH-------VHRLMAGSMAGMTAVICTYPLDMVR 155          
The following BLAST results are available for this feature:
BLAST of CK935744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
SCMC1_XENTR1.364e-1842.19Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1A_XENLA1.782e-1842.19Calcium-binding mitochondrial carrier protein SCaM... [more]
CMC3_CAEBR1.782e-1841.73Probable calcium-binding mitochondrial carrier CBG... [more]
CMC2_CAEEL2.327e-1841.73Putative calcium-binding mitochondrial carrier F55... [more]
SCMC2_BOVIN3.039e-1843.41Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_BOVIN3.039e-1840.16Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_XENLA3.039e-1838.89Solute carrier family 25 member 42 OS=Xenopus laev... [more]
SCMC1_HUMAN3.969e-1840.16Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_MOUSE5.184e-1840.16Calcium-binding mitochondrial carrier protein SCaM... [more]
GDC_HUMAN5.184e-1840.94Graves disease carrier protein OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_A08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935744 ID=CK935744; Name=CK935744; organism=Citrus sinensis; type=EST; length=796bp
GGGGGCTTATATAGATACACAAATGATGACGTCCAAATGAGCGCACGCCG
TCACTCGCACAGAGTCACAAAAGTTGACACTCCACTTTCAGTCCTCGGAA
GCCGTCAACAAAATCTTCGTCAGTAACAGATGCAAATTATCATCGCCGCC
CGATAATCGCCGGAGATCCGACACCCGACCGATCAATTGAAAGTGCGAAA
GGACACGACTGCTTGCTGTCTGTCTTTTTCTGGTAGCCTAGGGTTTGGTA
TCATTGATGGCTTCGGAGGATGTGAAGACGAGCGAATCGGCGGTGTCGAA
GATCGTTAATCTGGCGGAAGAGGCCAAGCTTGCAGGAGAAGGCGTCAAAG
CCCCAAGCTATGCTGTTCTCAGTATTTGCAAATCTCTCGTTGCTGGAGGA
GTTGCCGGCGCAGTATCTCGCACTGCTGTTGCTCCATTGGAACGATTGAA
AATACTACTACAGGTGCAGAATCCCCACAGTATAAAATATAATGGAACGA
TTCAAGGTTTGAAATATATATGGAGAACTGAAGGATTTCGCGGACTGTTT
AAAGGCAATGGTACCAATTGCGCACGTATTGTTCCAAACTCAGCTGTCAA
ATTTTTCAGCTATGAGCAAGCTTCTAAGGGAATACTGTATCTGTATCAGC
ATCACACTGGAAATGAAGATGCTGAACTCACTCCTCTTTTACGCCTTGGA
GCTGGAGCATGTGCTGGAATAATTGCCATGTCTGCCACTTACCCCATGGA
TATGGTACGGGGGGAGGCTAACTNTTCAGACAGAAAAGTCTCCATA
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