CK935744

Overview
NameCK935744
Unique NameCK935744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6178 contig Csv1_Contig6178:3..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: SCMC2_RAT (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Rattus norvegicus GN=Slc25a25 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.770e-18
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNG--TIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            + LVAGG AGAVSRT  APL+RLK+L+QV   H+ + N    I G   + R  G + L++GNG N  +I P SA+KF +YEQ  + +        G++   L    RL AG+ AG IA S+ YPM++++
Sbjct:  188 RHLVAGGGAGAVSRTCTAPLDRLKVLMQV---HASRSNNMCIIGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRLV--------GSDQETLRIHERLVAGSLAGAIAQSSIYPMEVLK 305          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: SCMC2_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Mus musculus GN=Slc25a25 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18
Identity = 54/129 (41.86%), Postives = 78/129 (60.47%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNG--TIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            + LVAGG AGAVSRT  APL+RLK+L+QV   H+ + N    + G   + R  G + L++GNG N  +I P SA+KF +YEQ  + +        G++   L    RL AG+ AG IA S+ YPM++++
Sbjct:  188 RHLVAGGGAGAVSRTCTAPLDRLKVLMQV---HASRSNNMCIVGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRLV--------GSDQETLRIHERLVAGSLAGAIAQSSIYPMEVLK 305          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: S2542_RAT (Solute carrier family 25 member 42 OS=Rattus norvegicus GN=Slc25a42 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18
Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 2
Query:  305 VNLAEEAKLAGEGVKAPSYAVLSICKSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            V L E+A+    G  +       +  SL++G +AGA+++TAVAPL+R KI+ QV +          + L + +  EGF  L++GN     R++P +A++F ++E+  +    +  H+ G     L P  RL AGA AG  A S TYP+D+VR
Sbjct:   10 VRLGEDAEAVLAGAVSTKANHRQVLSSLLSGALAGALAKTAVAPLDRTKIIFQVSSKR-FSAKEAFRLLYFTYLNEGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKR----ILGHYYGFRGEALPPWPRLLAGALAGTTAASLTYPLDLVR 156          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: S2542_DANRE (Solute carrier family 25 member 42 OS=Danio rerio GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18
Identity = 66/167 (39.52%), Postives = 94/167 (56.29%), Query Frame = 2
Query:  272 VKTSESAVSKIVNLAEEAKLAGEGVKAPSYAVLSICKSLVAGGVAGAVSRTAVAPLERLKILLQV-QNPHSIKYNGTIQGLKYIWRT---EGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            V+  + A+++   L   A    EG K       S+  SLV+G  AGAV++TAVAPL+R KI+ QV  N  S K     +  + I+RT   +GF  L++GN     R++P +A++F ++EQ  KGIL  Y    G +   L P+ RL AG+ AG  A   TYP+DMVR
Sbjct:    5 VQERQGALAQGEVLPRPAASQSEGFKQGR----SVLNSLVSGAFAGAVAKTAVAPLDRTKIIFQVSSNRFSAK-----EAYRLIYRTYLKDGFFSLWRGNSATMVRVIPYAAIQFCAHEQ-YKGILGKYY---GFQGKALPPVPRLLAGSLAGTTAAIITYPLDMVR 158          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: S2542_MOUSE (Solute carrier family 25 member 42 OS=Mus musculus GN=Slc25a42 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 2
Query:  305 VNLAEEAKLAGEGVKAPSYAVLSICKSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            V L E+A+    G  +       +  SL++G +AGA+++TAVAPL+R KI+ QV +          + L + +  EGF  L++GN     R++P +A++F ++E+  +    +  H+ G     L P  RL AGA AG  A S TYP+D+VR
Sbjct:   10 VRLREDAEAVLAGAVSSKRDHRQVLSSLLSGALAGALAKTAVAPLDRTKIIFQVSSKR-FSAKEAFRLLYFTYLNEGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKR----ILGHYYGFRGEALPPWPRLLAGALAGTTAASLTYPLDLVR 156          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: SCM2A_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-A OS=Danio rerio GN=slc25a25a PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.710e-17
Identity = 51/127 (40.16%), Postives = 74/127 (58.27%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            + LV+GG AGAVSRT  APL+RLK+L+QV      K    + GL  + +  G R L++GNG N  +I P +A+KF +YEQ  + +        G+    L    R  AG+ AG+IA S  YPM++++
Sbjct:  188 RHLVSGGGAGAVSRTCTAPLDRLKVLMQVHGCQG-KSMCLMSGLTQMIKEGGVRSLWRGNGINVIKIAPETALKFMAYEQIKRVM--------GSSQETLGISERFVAGSLAGVIAQSTIYPMEVLK 305          

HSP 2 Score: 21.557 bits (44), Expect = 1.710e-17
Identity = 7/19 (36.84%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  312 WRKRPSLQEKASKPQAMLF 368
            W+K P+LQ   + P+ +L+
Sbjct:  139 WKKYPTLQPAENIPEIILY 157          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: SCMC3_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Homo sapiens GN=SLC25A23 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.573e-17
Identity = 54/129 (41.86%), Postives = 74/129 (57.36%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYN--GTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            K LVAG VAGAVSRT  APL+RLK+ +QV   H+ K N    + GL+ +    G R L++GNG N  +I P SA+KF +YEQ  + IL         +   L    R  AG+ AG  A +  YPM++++
Sbjct:  187 KQLVAGAVAGAVSRTGTAPLDRLKVFMQV---HASKTNRLNILGGLRSMVLEGGIRSLWRGNGINVLKIAPESAIKFMAYEQIKRAIL--------GQQETLHVQERFVAGSLAGATAQTIIYPMEVLK 304          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: SCMC1_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Danio rerio GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.573e-17
Identity = 51/129 (39.53%), Postives = 74/129 (57.36%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYN--GTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            K L AGGVAGAVSRT  APL+R+K+ +QV   HS K N    + G K + +  G   L++GNG N  +I P +A+KF +YEQ        Y+     +  ++    R  AG+ AG  A +A YPM++++
Sbjct:  197 KQLAAGGVAGAVSRTGTAPLDRMKVFMQV---HSSKTNKISLVNGFKQMIKEGGVASLWRGNGVNVIKIAPETAIKFMAYEQ--------YKKLLSKDGGKVQSHERFMAGSLAGATAQTAIYPMEVMK 314          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: CMC3_CAEEL (Probable calcium-binding mitochondrial carrier F17E5.2 OS=Caenorhabditis elegans GN=F17E5.2 PE=2 SV=4)

HSP 1 Score: 89.3521 bits (220), Expect = 2.573e-17
Identity = 50/127 (39.37%), Postives = 78/127 (61.42%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            + LVAGGVAGA+SRT  AP +R+K+ LQV +  + K  G +  +  +    G +  ++GNG N  +I P SA+KF  Y+Q  + +    Q + G   AEL+ + RL AG+ AG I+ +A YPM++++
Sbjct:  246 RHLVAGGVAGAMSRTCTAPFDRIKVYLQVNSTKTNKL-GVVSCVHLLHAEGGIKSFWRGNGINVIKIAPESAMKFMCYDQIKRWM----QEYKGG--AELSTIERLLAGSSAGAISQTAIYPMEVMK 365          
BLAST of CK935744 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 49/127 (38.58%), Postives = 76/127 (59.84%), Query Frame = 2
Query:  380 KSLVAGGVAGAVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVR 760
            + L+AGG+AGAVSRT+ APL+RLK+++QV    S+   G   G + + +  G R L++GNGTN  +I P +AVKF+ YEQ        Y+     E  ++    R  +G+ AG  A +  YPM++++
Sbjct:  196 RQLLAGGIAGAVSRTSTAPLDRLKVMMQVHGSKSMNIFG---GFRQMIKEGGVRSLWRGNGTNVIKIAPETAVKFWVYEQ--------YKKLLTEEGQKIGTFERFISGSMAGATAQTFIYPMEVMK 311          
The following BLAST results are available for this feature:
BLAST of CK935744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
SCMC2_RAT6.770e-1842.64Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_MOUSE8.843e-1841.86Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_RAT8.843e-1834.87Solute carrier family 25 member 42 OS=Rattus norve... [more]
S2542_DANRE8.843e-1839.52Solute carrier family 25 member 42 OS=Danio rerio ... [more]
S2542_MOUSE1.155e-1734.87Solute carrier family 25 member 42 OS=Mus musculus... [more]
SCM2A_DANRE1.710e-1740.16Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC3_HUMAN2.573e-1741.86Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_DANRE2.573e-1739.53Calcium-binding mitochondrial carrier protein SCaM... [more]
CMC3_CAEEL2.573e-1739.37Probable calcium-binding mitochondrial carrier F17... [more]
SCMC1_RABIT3.360e-1738.58Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_A08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935744 ID=CK935744; Name=CK935744; organism=Citrus sinensis; type=EST; length=796bp
GGGGGCTTATATAGATACACAAATGATGACGTCCAAATGAGCGCACGCCG
TCACTCGCACAGAGTCACAAAAGTTGACACTCCACTTTCAGTCCTCGGAA
GCCGTCAACAAAATCTTCGTCAGTAACAGATGCAAATTATCATCGCCGCC
CGATAATCGCCGGAGATCCGACACCCGACCGATCAATTGAAAGTGCGAAA
GGACACGACTGCTTGCTGTCTGTCTTTTTCTGGTAGCCTAGGGTTTGGTA
TCATTGATGGCTTCGGAGGATGTGAAGACGAGCGAATCGGCGGTGTCGAA
GATCGTTAATCTGGCGGAAGAGGCCAAGCTTGCAGGAGAAGGCGTCAAAG
CCCCAAGCTATGCTGTTCTCAGTATTTGCAAATCTCTCGTTGCTGGAGGA
GTTGCCGGCGCAGTATCTCGCACTGCTGTTGCTCCATTGGAACGATTGAA
AATACTACTACAGGTGCAGAATCCCCACAGTATAAAATATAATGGAACGA
TTCAAGGTTTGAAATATATATGGAGAACTGAAGGATTTCGCGGACTGTTT
AAAGGCAATGGTACCAATTGCGCACGTATTGTTCCAAACTCAGCTGTCAA
ATTTTTCAGCTATGAGCAAGCTTCTAAGGGAATACTGTATCTGTATCAGC
ATCACACTGGAAATGAAGATGCTGAACTCACTCCTCTTTTACGCCTTGGA
GCTGGAGCATGTGCTGGAATAATTGCCATGTCTGCCACTTACCCCATGGA
TATGGTACGGGGGGAGGCTAACTNTTCAGACAGAAAAGTCTCCATA
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