CK935747

Overview
NameCK935747
Unique NameCK935747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935747 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.551e-12
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 3
Query:  261 EASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIE-KEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKAHVRAIQI 602
            +A A   T  D  E P A+ F  D+PG+              L +SG+R  E KE++   + R+ER  G F R+F+LPENA +D+I A   +GVL VTV K    +    + IQ+
Sbjct:   38 DAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTVQKLPPPEPKKPKTIQV 152          
BLAST of CK935747 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 3
Query:  261 EASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSD--TWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKAHVRAIQI 602
            +A A   T  D KE P ++VF AD+PG+              L +SG+R   ++D+ D   + R+ER  G F R+F LPENA ++ I A  ++GVL VTV K    +    + +++
Sbjct:   49 DAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVTVEKLPPPEPKKPKTVEV 164          
BLAST of CK935747 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  261 EASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNI----EKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKAHVRAIQI 602
            +A A   T  D K+ P A+ F  D+PGL              L ISG+R      E++++S  + R+ER  G F R+F LP+NA +D+I A  ++GVLTVTV K    +    + I++
Sbjct:   46 DARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEV 163          
BLAST of CK935747 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.110e-11
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  288 VDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQI--------------SGQRNIEKEDKSD--TWHRVERSSGMFSR---RFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKAH 584
            +DW+ETP AHVF+ DLPGL              L++              +G+ + E+E+++D   WH  ER++G       +FRLPE+A  D   A M +GVLTVTVPK  + KK H
Sbjct:   29 MDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVTVPK-RKGKKRH 145          
The following BLAST results are available for this feature:
BLAST of CK935747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
HS176_ARATH5.551e-1236.5217.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP22_IPONI1.237e-1134.4818.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP18_ORYSJ1.237e-1135.5918.0 kDa class II heat shock protein OS=Oryza sati... [more]
HS178_ORYSJ2.110e-1138.1417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_A12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935747 ID=CK935747; Name=CK935747; organism=Citrus sinensis; type=EST; length=797bp
GGGACCAGAAAGCAACTTTCCCAAAGGCACTTACTTTTTCTGCATTCGGT
GACAAGTACTTTTTATTAGTCGATAGAGGAAACAGAGAGGGAAAACAAAA
AACAGGAAAGATAAGGAAAATGTCGCTGATTCCAAGCCTCTTCGGCAACC
GACGCAGCAGTGTGTTCGATCCGTTCTCACTCGACGTTTGGGATCCATTC
AGGGACTTCCCTCTCTCTGCTTCTTCTTTTCCATCTGCGGTGTCCTCTCA
GTTCCCTGGAGAAGCCTCTGCTTTCGTTAATACCCGCGTGGACTGGAAGG
AAACCCCAGAGGCCCACGTGTTCAAGGCTGATCTTCCGGGGCTAAGGAAA
GAGGAGGTGAAGGTCGAGGTTGAGGATGATAGGGTGCTTCAGATAAGCGG
GCAGAGGAACATTGAGAAGGAAGACAAGAGCGACACGTGGCATCGCGTGG
AGCGTAGCAGTGGCATGTTCTCGAGGAGGTTCAGGCTGCCGGAGAATGCG
AAGATGGACCGCATTAAGGCTTCAATGGAGAACGGTGTGCTTACTGTTAC
CGTTCCTAAAGCGGAGGAGGCCAAGAAAGCTCATGTCAGGGCTATTCAAA
TCTCTGGCTGACTAATTAATAAACAAAGACAATAAATAATTGTATGATAA
GTTTTATGGTTTGGTTTGGTCTATGTATCATGTGAAGTCTGTCTTTGTCT
ACTGAGATCGAGTGTCTTTGTTTGTAATGGGGATGTCAGAATGGGAATAA
TAATGTAATTTCGTAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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