CK935750

Overview
NameCK935750
Unique NameCK935750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length342
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935750 vs. ExPASy Swiss-Prot
Match: PPIL1_ASPNG (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspergillus niger GN=cypC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.385e-17
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 2
Query:   59 SIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVRSSS 277
            SIYG KF DE N   KHTG GILSMAN+GP  NGSQFF+  A   WLDGKH +FG+V  GM V++ +  V+++S
Sbjct:   67 SIYGEKFEDEINPNLKHTGAGILSMANSGPNNNGSQFFITLAPQPWLDGKHTIFGRVKSGMRVIQRMGLVKTNS 140          
BLAST of CK935750 vs. ExPASy Swiss-Prot
Match: PPIB_TREPA (Probable peptidyl-prolyl cis-trans isomerase OS=Treponema pallidum GN=ppiB PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.115e-17
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 2
Query:   68 GSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAI 256
            G +F DE +   +H  PG+LSMANAGPGTNGSQFF+    T WLDGKH VFG+VVEGM+VV AI
Sbjct:  112 GYQFPDECDPALRHDSPGVLSMANAGPGTNGSQFFITHVATPWLDGKHTVFGKVVEGMEVVHAI 175          
BLAST of CK935750 vs. ExPASy Swiss-Prot
Match: CYPE_DICDI (Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyostelium discoideum GN=cypE PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.313e-17
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 2
Query:   56 ESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVRSSSGRTNKPV 298
            ESIYG KF DE   + KHTG GILSMAN+G  +NGSQFF+    T WLDGKH +FG+V  GM   K ++K+ +     +KP+
Sbjct:   67 ESIYGKKFEDEITKELKHTGAGILSMANSGVNSNGSQFFITFGPTPWLDGKHTIFGRVKSGM---KVVQKMNAMQTNNDKPI 145          
BLAST of CK935750 vs. ExPASy Swiss-Prot
Match: PPIL1_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus musculus GN=Ppil1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.063e-17
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 2
Query:   59 SIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVRSSS 277
            SIYG +F DE     K TG GIL+MANAGP TNGSQFFV  A T+WLDGKH +FG+V +G+ +V  +  V ++S
Sbjct:   76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNS 149          
BLAST of CK935750 vs. ExPASy Swiss-Prot
Match: PPIL1_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo sapiens GN=PPIL1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.063e-17
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 2
Query:   59 SIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVRSSS 277
            SIYG +F DE     K TG GIL+MANAGP TNGSQFFV  A T+WLDGKH +FG+V +G+ +V  +  V ++S
Sbjct:   76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNS 149          
BLAST of CK935750 vs. ExPASy Swiss-Prot
Match: PPIL1_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Bos taurus GN=PPIL1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.063e-17
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 2
Query:   59 SIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVRSSS 277
            SIYG +F DE     K TG GIL+MANAGP TNGSQFFV  A T+WLDGKH +FG+V +G+ +V  +  V ++S
Sbjct:   76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNS 149          
BLAST of CK935750 vs. ExPASy Swiss-Prot
Match: CYP15_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizopus oryzae GN=cyp15 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.063e-17
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 2
Query:   56 ESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVRSSSGRTNKPV 298
            ESI+G  F DE   + +H  P  +SMANAGP TNGSQFF+  A T WLD KH VFG+V  GMDVV +IE  +    +TNKP+
Sbjct:  540 ESIWGDDFEDEFSREFRHDRPYTVSMANAGPNTNGSQFFITVAPTTWLDNKHSVFGRVTAGMDVVHSIESAKVD--KTNKPL 619          
BLAST of CK935750 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.019e-16
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 2
Query:   59 SIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVR-SSSGRTNKPVVIADCGQL 322
            SIYG  F DE F  KH+ P +LSMAN GP +N SQFF+ TA     +GKHVVFG+VV+G +VV  I+ +      +    V+I++CG+L
Sbjct:   86 SIYGRYFDDEKFKLKHSRPYLLSMANKGPNSNSSQFFITTAAAPHCNGKHVVFGEVVKGQNVVDYIDNLAVDDKSKPLAKVLISNCGEL 174          
BLAST of CK935750 vs. ExPASy Swiss-Prot
Match: PPIL1_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryptococcus neoformans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.874e-16
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 2
Query:   59 SIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVRSSSGRTNKPV 298
            SIYG +FADE   + +  G GIL+MAN+GP TNGSQFF+  A T +LDGKH +FG+V  GM  ++ +E VR+   + ++PV
Sbjct:   71 SIYGDRFADEIHPELRFVGAGILAMANSGPNTNGSQFFITCAPTPYLDGKHTIFGRVSSGMKTIQRLEAVRTD--KDDRPV 149          
BLAST of CK935750 vs. ExPASy Swiss-Prot
Match: PPWD1_PONAB (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.002e-15
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 2
Query:   56 ESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVRSSSGRTNKP 295
            ESI+G +F DE +   +H  P  LSMANAG  TNGSQFF+    T WLD KH VFG+V +GM+VV+ I  V+ +  +T+KP
Sbjct:  555 ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNP-KTDKP 634          
The following BLAST results are available for this feature:
BLAST of CK935750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
PPIL1_ASPNG2.385e-1758.11Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspe... [more]
PPIB_TREPA3.115e-1765.63Probable peptidyl-prolyl cis-trans isomerase OS=Tr... [more]
CYPE_DICDI5.313e-1752.44Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyo... [more]
PPIL1_MOUSE9.063e-1756.76Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus ... [more]
PPIL1_HUMAN9.063e-1756.76Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo... [more]
PPIL1_BOVIN9.063e-1756.76Peptidyl-prolyl cis-trans isomerase-like 1 OS=Bos ... [more]
CYP15_RHIOR9.063e-1754.88Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizo... [more]
CYP9_CAEEL2.019e-1648.31Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIL1_CRYNE5.874e-1650.62Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryp... [more]
PPWD1_PONAB1.002e-1551.85Peptidylprolyl isomerase domain and WD repeat-cont... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004552_B03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935750 ID=CK935750; Name=CK935750; organism=Citrus sinensis; type=EST; length=342bp
GGGGGGATTCATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCG
GAGGCGAATCAATCTACGGCTCGAAATTCGCCGATGAGAACTTCGTGAAG
AAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAAC
CAACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATG
GGAAGCACGTTGTGTTCGGTCAGGTCGTCGAAGGGATGGACGTCGTCAAG
GCCATCGAGAAAGTGAGGTCCAGCTCCGGCAGGACCAACAAGCCCGTCGT
GATCGCTGATTGCGGTCAATTGTCTTAGATTTGATCATGATA
back to top