CK935754

Overview
NameCK935754
Unique NameCK935754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935754_ssr24 microsatellite CK935754_ssr24:24..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10529 contig Csv1_Contig10529:60..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.962e-68
Identity = 126/232 (54.31%), Postives = 158/232 (68.10%), Query Frame = 2
Query:  155 FAGGPWQSAHTTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGG--WCNPPRPHFDLAMPMFLKLAQCRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-GANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTG-SDRRTSTSWNVAPANWQFGQTFSGK 838
            F    W  AH TFYG   AS TMGGACGYGNLY+ GYG +TAALST LF +G  CG C++++C G    C  G+PAI +TATN CPPN+A+  D GG  WCNPPR HFDL+ P F+++A  RAGIVPV YRRVPC + GG+RF + G  Y+ L  V NVAGAGD+  + VK G    W+ MS NWG ++Q+ AQL GQALSF+VT  +  +T  +  V PA+W FG T+  +
Sbjct:   32 FRAMQWTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTYQAR 262          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.621e-66
Identity = 123/227 (54.19%), Postives = 149/227 (65.64%), Query Frame = 2
Query:  158 AGGPWQSAHTTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQCRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 832
            A   W     TFYGG+D SGTMGGACGYGNLY Q YG+N AALST LFN+G SCG C+ + C  G  P WC  G  AI +T TN+           GGWCN  RP+FD++ P +  +    AGIVP+ Y++V C + GG+RF INGF YF LVLVTN+AG+G IV +SVKG+ T W+ M+RNWG NWQ  A L GQALSF VT +  +T    +  PA W FGQTFS
Sbjct:   19 ARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGK-AITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 8.067e-66
Identity = 115/232 (49.57%), Postives = 155/232 (66.81%), Query Frame = 2
Query:  149 GVFAGGPWQSAHTTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQCRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNF 844
            G  A   W+SA  ++Y  +D    +GGACG+G+L   GYG+ T  LSTALF  G +CG C+E+KC  D ++C PG  +I++TATNFC PNF  P+D GG CNPP  HF L +  F K+A  +AG++P+ YRRV C + GG+RF + G  +F  VL++NV GAGD+  V +KG  + WLSM RNWGQ W  N+   GQ LSF +T SD +T T++NV P  W FG+T++GK F
Sbjct:   26 GSSALSEWRSAKASYYA-ADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGT-SIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEWDFGKTYTGKQF 255          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 8.919e-65
Identity = 116/227 (51.10%), Postives = 158/227 (69.60%), Query Frame = 2
Query:  170 WQSAHTTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-QCRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQ-WLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 838
            W  AH T+YG +D+  ++GGACGY N Y  G+G +TAALS  LF +G SCG C++++C    DP+WC  G  A+ +TATNFCP N     +N GWCN PR HFD++ P F ++A +   GIVPV YRRV C++RGG+RFT+ G   FN+V+++NV G G +  V+V+G+  + WL M+RNWG NWQS+  L GQ LSF+VT +D +T T  NV P++W FGQTFS +
Sbjct:   27 WIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRG-AAVTVTATNFCPTN-----NNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFSSR 247          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 2.197e-63
Identity = 119/224 (53.12%), Postives = 147/224 (65.62%), Query Frame = 2
Query:  170 WQSAHTTFYGGSDASGT-MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQCRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 838
            W  A   +YG     GT + GACGYG+L   GYG+ TAALSTALFN+G SCGAC+E+ C  +PQ C  G+  I ITAT+ CPP  A       WC  P  HFDL++PMF+K+AQ +A +VPV YRRVPC K GG++F + G      +L  NV GAGDI+ VS KG+ T W+ MSR WGQNW +N  L GQ++S RVT SD  T    +V PA+W FGQTF GK
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGS--IKITATDLCPPGSA-------WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDGK 259          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.574e-61
Identity = 107/227 (47.14%), Postives = 150/227 (66.08%), Query Frame = 2
Query:  170 WQSAHTTFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQCRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNF 844
            W+ A  T     D S ++  GGACGYG+L    +   +A LS  LFN G SCGAC E++C    +WC  G+P++++TAT+FCPPN    SD GGWCN P+ H +L+   F  +A+ RA ++P+ YRRV C +RGG+RF+++G  +F  VL++NV   G++V V VKG  T W+ M+RNWGQNW S+  L+GQ+LSF VT    +T  S++VAP  W+FG T+ GK F
Sbjct:   28 WKIATATLSRDRDGSSSVATGGACGYGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTYQGKQF 254          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.686e-61
Identity = 107/207 (51.69%), Postives = 139/207 (67.15%), Query Frame = 2
Query:  224 GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQCRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNF 844
            GGACGYG+L    YG  TA +S ALF  G +CG C+E++C     WC  G+P +++TAT+FC PN     D GGWCN P+ HF+++   FL++A+ +A IVPV +RRV C + GG+RFTI G   F  VL+TNVA  G++  V VKG+ T W+ M RNWGQNWQ +A L GQ LSF VTG   RT  +++VAP +W F QTF GK F
Sbjct:   52 GGACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDWMFAQTFEGKQF 258          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.291e-55
Identity = 115/240 (47.92%), Postives = 152/240 (63.33%), Query Frame = 2
Query:  137 AKIPGVFAG----GPWQSAHTTFYGGSDASGTM-GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQCRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGA-NTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 838
            AK+P V  G    GPW   H TFYGG DASGT  GGACGY +  + GYG  TAA+S ALF+NG  CGAC+ELK  GD          +++TATN  PP       NG        HFDL MP FL +A+ + G+VPVSYR+V C ++GGI++TI G   +N+V+V NV GAGD+V+++VKG    +W  + R+WGQ W++ A L G++L+FRV   D R +TSW VAP +W +  T+  K
Sbjct:   67 AKMPHVNHGRYKCGPWVDGHATFYGGRDASGTTEGGACGYKD--ADGYGAMTAAVSPALFDNGAGCGACYELK--GD------SGKTVVVTATNQAPPPV-----NG----MKGEHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTYQAK 287          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 9.251e-54
Identity = 108/231 (46.75%), Postives = 136/231 (58.87%), Query Frame = 2
Query:  170 WQSAHTTFYGGSDASGT-MGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQCRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK--GANTQWLSMSRNWGQNWQSNAQL---VGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKN 841
            W     TFYG     G   GGACGY  N     Y   TAALST LF +G  CG C+EL+C   P WCNPG+P+++IT TN CPPN+  P+D+GGWCNPPR HFD+A P FLKLAQ  AGIVPV YRRVPC++ GG+RF + G  Y+ L+ V NV GAGD+  +SVK  G    W+  + NWG  +Q  A L    G  +      + ++T    +     W  G  + G N
Sbjct:   52 WHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWWITGLCYQGSN 281          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.139e-27
Identity = 83/245 (33.88%), Postives = 123/245 (50.20%), Query Frame = 2
Query:  170 WQSAHTTFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------CRAGIVPVSYRRVPCRKRG---GIRFTINGFRYFNLVLVTNVAGAGDIVRVSV-----KGANTQWLSMSRNWGQNWQSNA--QLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTF-SGKNFR 847
            W     T+YG ++ SGT GGACGY G++    +    AA S +++ +G  CG+C+++KC G+P  C+ G P + +  T+ CP         GG C     HFDL+   F  +A+         AG +PV Y RVPC+ +G     R      +Y+  VLV +  G GD+  V +      G    W +M ++WG  W+ N+    +   +S R+T    RT  + NV PA WQ G T+ S  NFR
Sbjct:   38 WSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CS-GKP-VTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNSGPAPLQAPMSIRLTSGSGRTLVASNVIPAGWQPGGTYRSIVNFR 270          
The following BLAST results are available for this feature:
BLAST of CK935754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
EXP30_ORYSJ2.962e-6854.31Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP20_ORYSJ3.621e-6654.19Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP10_ORYSJ8.067e-6649.57Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH8.919e-6551.10Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP21_ARATH2.197e-6353.13Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ARATH1.574e-6147.14Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP16_ORYSJ2.686e-6151.69Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ1.291e-5547.92Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ9.251e-5446.75Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ1.139e-2733.88Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004390_H12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935754 ID=CK935754; Name=CK935754; organism=Citrus sinensis; type=EST; length=895bp
GGGGATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCT
GTCTCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTT
TTCTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGG
TGTCTTCGCCGGTGGCCCCTGGCAATCGGCCCACACCACTTTTTACGGTG
GCAGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTG
TACAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTT
CAACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCG
ACCCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACC
AACTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTG
CAACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGC
TCGCCCAGTGCCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCC
TGCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTT
CAACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCG
TGAGCGTGAAAGGGGCCAACACCCAATGGCTGAGCATGAGCCGCAACTGG
GGACAAAACTGGCAATCCAACGCTCAGCTCGTGGGCCAGGCACTTTCGTT
TAGAGTCACGGGCAGTGACAGAAGGACCTCAACCTCTTGGAACGTGGCGC
CAGCGAATTGGCAGTTCGGTCAAACCTTTTCGGGAAAGAATTTCCGCGTC
TAGTGATATTTAATCTTTTTTCAACATTTTCATGTTTCCCGCCTT
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