CK935754

Overview
NameCK935754
Unique NameCK935754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935754_ssr24 microsatellite CK935754_ssr24:24..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10529 contig Csv1_Contig10529:60..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.805e-26
Identity = 81/236 (34.32%), Postives = 123/236 (52.12%), Query Frame = 2
Query:  170 WQSAHTTFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA------QCR-AGIVPVSYRRVPCRKRGGIRFTI-----NGFRYFNLVLVTNVAGAGDI--VRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQA-LSFRVTGSDRRTSTSWNVAPANWQFGQTF 829
            W +   T+YG ++ +G+ GGACGY G ++   +    AA S +++ +GL CG+C+++KC G+   C+ GNP + +  T+ CP         GG C     HFDL+   F  +A      Q R AG++ + Y RVPC   GG++ T      +   YF  VLV    G GD+  V +   GA   W  M ++WG  W+ NA    QA  S R+T S  +T  + NV P+ W+ G ++
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CS-GNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYF-AVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWKLNAGSALQAPFSIRLTSSSGKTLVASNVIPSGWKPGMSY 258          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.392e-25
Identity = 74/238 (31.09%), Postives = 114/238 (47.90%), Query Frame = 2
Query:  161 GGPWQSAHTTFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------CRAGIVPVSYRRVPCRKRGGIRFTINGFR--YFNLVLVTNVAGAGDIVRVSVKGA--NTQWLSMSRNWGQNWQSNAQL---VGQALSFRVTGSDRRTSTSWNVAPANWQFGQTF 829
            G  W S   T+YGG    G+ GGACGY +   Q  +    AA   +LF NG  CG+C+++KC G+ + C+ G P + +  T+ CP         GG C     HFD++   F  +A          AG++ + Y+RVPCR    + F ++     Y+  +LV    G GD+  V +  A     W +M ++WG  W+ N+     +    S R+T    +   + NV P+ WQ G T+
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACS-GRP-VTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTY 267          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.023e-25
Identity = 80/237 (33.76%), Postives = 122/237 (51.48%), Query Frame = 2
Query:  170 WQSAHTTFYGGSDASGTMGGACGYGNLYSQG-YGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA------QCR-AGIVPVSYRRVPCRKRGGIRFTI-----NGFRYFNLVLVTNVAGAGDIVRVSV--KGANTQWLSMSRNWGQNWQSNAQLVGQA-LSFRVTGSDRRTSTSWNVAPANWQFGQTFS 832
            W +   T+YG ++ +G+ GGACGY     Q  +    AA S +++ +GL CG+C+++KC G+   C+ GNP + +  T+ CP         GG C     HFDL+   F  +A      Q R AG++ + Y RVPC   GG+  T      +   YF  VLV    G GD+  + +   GA   W  M ++WG  W+ +A    QA LS R+T S  +T  + NV P+ W+ G +++
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSA-CS-GNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVMLTFAVDAGSNPSYF-AVLVKYENGDGDLSGMDLMQTGAGAAWTPMQQSWGAVWKLSAGAALQAPLSIRLTSSSGKTLVASNVIPSGWKPGASYT 259          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.429e-24
Identity = 85/245 (34.69%), Postives = 119/245 (48.57%), Query Frame = 2
Query:  146 PGVFAGGPWQSAHTTFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------CRAGIVPVSYRRVPCRKRG-GIRFTI----NGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQAL----SFRVTGSDRRTSTSWNVAPANWQFGQTF 829
            P V     W +A  T+YG  +  G+ GGACGY     Q  +    AA S +L+  G  CGAC+E+KC  +   C+ G PA ++  T+ CP         GG C     HFD++      +A+         AGI+ V YRRVPC+  G  I F +    N F YF  VL+    G GD+  V +  A   W  M +NWG  W+ N+   G+AL    S R+T    +   + NV PA+W+ G T+
Sbjct:   56 PSVTVTTGWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAA-CS-GQPATVV-ITDECP---------GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPF-YFE-VLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWRYNSN-TGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTY 285          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.441e-22
Identity = 77/236 (32.63%), Postives = 114/236 (48.31%), Query Frame = 2
Query:  170 WQSAHTTFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQCRA-------GIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDIVRVSVKGANT-QWLSMSRNWGQNW-QSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 838
            W+ A  T+YG ++  G+ GGACGYG+L           ++S  LF +G  CGAC+++KC  D   C+    A+ +  T+ CP         GG C   R HFDL+   F ++A   A       G + V YRR  C+  G  I F +N     ++  +LV    G GDI  + +K AN+ +WL M   WG  W      LVG       T S ++  T+ +V P NW+   T++ +
Sbjct:   48 WRPATATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKC-LDHGICS--RRAVTVIVTDECP---------GGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGSTNFWLSLLVEFEDGQGDIGSMQIKQANSVEWLDMKHVWGATWCLVRGPLVGPFSVRLTTLSAQKALTARDVIPRNWKPTATYTSR 271          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.441e-22
Identity = 78/236 (33.05%), Postives = 110/236 (46.61%), Query Frame = 2
Query:  170 WQSAHTTFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQC-------RAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDIVRVSVKGANT-QWLSMSRNWGQNWQ-SNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 838
            W  A  T+YG +D  G+ GGACGYG L           A+S  LF  G  CGAC++++C  D   C+    A+ +  T+ CP         GG C   R HFDL+   F +LA           G + V YRR  C+  G  I F +N     ++  +LV    G GDI  + +K AN+ QW  M   WG  W  +   LVG       T + R+T ++ +V P NW    T++ +
Sbjct:   45 WHPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRC-LDASICS--RRAVTVIVTDECP---------GGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGSTTFWLSLLVEFEDGDGDIGSMQLKQANSAQWQDMKHIWGATWSLTPGPLVGPFSVRLTTLTTRQTLSAQDVIPKNWTPKATYTSR 268          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21
Identity = 74/236 (31.36%), Postives = 112/236 (47.46%), Query Frame = 2
Query:  170 WQSAHTTFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQC-------RAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDIVRVSVKGANT-QWLSMSRNWGQNWQSNAQLVGQALSFRVTG-SDRRTSTSWNVAPANWQFGQTFSGK 838
            W  A  T+YG  +  G+ GGACGYG L   +       A++  LF NG  CGAC++++C  D   C+    A+ +  T+ CP            C+    HFDL+  +F +LA           G++PV YRR  C+ RG  I F +N     ++  +LV    G GDI  + ++ A   +WL M   WG NW      +    S ++T  S  +T ++ +V P NW    T+S +
Sbjct:   36 WLPAVATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRC-LDKSICS--RRAVTVIITDECP-----------GCSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCIIGGPLKGPFSIKLTTLSAGKTLSATDVVPRNWAPKATYSSR 257          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.080e-21
Identity = 83/241 (34.44%), Postives = 121/241 (50.21%), Query Frame = 2
Query:  170 WQSAHTTFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA------QCR-AGIVPVSYRRVPCRKRG-GIRFTINGFRYFN--LVLVTNVAGAGDIVRVSVKGA--NTQWLSMSRNWGQNWQSNAQLVGQA-LSFRVTGSDR-RTSTSWNVAPANWQFGQTF-SGKNF 844
            W  A +T+YG     G+ GGACGYGN  +Q  +    +A   +LF +G  CGAC+++KC      C+  NP + +  T+ CP            C     HFDL+   F  +A      Q R  G + + Y++V C   G  + F ++     N   VLV  V G G+I R+ +K A  + +WLSMS++WG  W+ +     +A LS RVT  +  +T  + NV PANWQ G  + S  NF
Sbjct:   47 WSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSA-CSK-NP-VTVVITDECP-----------GCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTVVASNVIPANWQPGAIYKSNVNF 273          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXPB1_ARATH (Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.124e-20
Identity = 72/236 (30.51%), Postives = 113/236 (47.88%), Query Frame = 2
Query:  170 WQSAHTTFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QCRAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDIVRVSVKGANT-QWLSMSRNWGQNW-QSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 838
            W  A  T+YG ++  G+ GGACGYG+L   + +     A+S  LF  G  CGAC++++C  D   C+    A+ I AT+  P        +G        HFDL+   F  +A           G++ + YRR  C+ RG  I F +N     Y+  +L+    G GDI  + ++ A + +W+SM   WG NW      L G       T S+ +T ++ +V P+NW    T++ +
Sbjct:   40 WLPATATWYGSAEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRC-LDKTICS--KRAVTIIATDQSP--------SGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCIVEGPLKGPFSVKLTTLSNNKTLSATDVIPSNWVPKATYTSR 264          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.740e-20
Identity = 73/249 (29.32%), Postives = 114/249 (45.78%), Query Frame = 2
Query:  161 GGPWQSAHTTFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------CRAGIVPVSYRRVPCRKRG-GIRFTI--NGFRYFNLVLVTNVAGAGDIVRV----------SVKGANT-QWLSMSRNWGQNWQ--SNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 832
            GG W +A  T+YG  + +G    GGACG+ N+    +   T+  +  LF +G  CG+C++++C G P  C+     ++IT  N+ P +                HFDL+   F  +A+         AGI+ + +RRVPC+  G  + F +       +  +LV    G GD+V+V           V G  T  W  M  +WG  W+  +N  L G   S R+T    +T  +  V PA+WQ    +S
Sbjct:   89 GGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPA-CSGLPETVIITDMNYYPVSLY--------------HFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSNPVYMAILVEYENGDGDVVQVDLMESRYSTGGVDGTPTGVWTPMRESWGSIWRLDTNHPLQG-PFSLRITNESGKTLIADQVIPADWQPNTVYS 321          
The following BLAST results are available for this feature:
BLAST of CK935754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
EXB15_ORYSJ2.805e-2634.32Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ORYSJ1.392e-2531.09Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB18_ORYSJ9.023e-2533.76Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB11_ORYSJ3.429e-2434.69Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB17_ORYSJ1.441e-2232.63Expansin-B17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB16_ORYSJ1.441e-2233.05Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB3_ARATH1.220e-2131.36Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]
EXPB2_ARATH2.080e-2134.44Putative expansin-B2 OS=Arabidopsis thaliana GN=EX... [more]
EXPB1_ARATH5.124e-2030.51Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 ... [more]
EXPB7_ORYSJ8.740e-2029.32Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004390_H12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935754 ID=CK935754; Name=CK935754; organism=Citrus sinensis; type=EST; length=895bp
GGGGATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCT
GTCTCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTT
TTCTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGG
TGTCTTCGCCGGTGGCCCCTGGCAATCGGCCCACACCACTTTTTACGGTG
GCAGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTG
TACAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTT
CAACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCG
ACCCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACC
AACTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTG
CAACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGC
TCGCCCAGTGCCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCC
TGCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTT
CAACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCG
TGAGCGTGAAAGGGGCCAACACCCAATGGCTGAGCATGAGCCGCAACTGG
GGACAAAACTGGCAATCCAACGCTCAGCTCGTGGGCCAGGCACTTTCGTT
TAGAGTCACGGGCAGTGACAGAAGGACCTCAACCTCTTGGAACGTGGCGC
CAGCGAATTGGCAGTTCGGTCAAACCTTTTCGGGAAAGAATTTCCGCGTC
TAGTGATATTTAATCTTTTTTCAACATTTTCATGTTTCCCGCCTT
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