CK935754

Overview
NameCK935754
Unique NameCK935754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935754_ssr24 microsatellite CK935754_ssr24:24..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10529 contig Csv1_Contig10529:60..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXLA1_ARATH (Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.351e-12
Identity = 60/220 (27.27%), Postives = 104/220 (47.27%), Query Frame = 2
Query:  203 SDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMF-LKLAQCRAGIVPVSYRRVPC---RKRGGIRFTINGFR--YFNLVLVTNVAGAGDIVRVSVK--GANTQWLSMSRNWGQNWQSNAQLVGQALSFR--VTGS-DRRTSTSWNVAPANWQFGQTF 829
            S AS    GAC YG++ +  +  + AA   +++ +G  CGACF+++C  +P+ C+     ++IT  N         S+        R    +A P+        + GIV + Y+RVPC    K   +R      +  Y  + L+    G  ++V + +   G++  W  M+R+ G  W ++    G A+ FR  VTG  D +   S +V P+NW+ G+ +
Sbjct:   34 SSASALSSGACAYGSMATSFFAGHIAAAIPSIYKDGAGCGACFQVRC-KNPKLCSTKGTIVMITDLN--------KSNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQ-GGQTEVVSIDIAQVGSSPNWGYMTRSHGAVWVTDKVPTG-AIQFRFVVTGGYDGKMIWSQSVLPSNWEAGKIY 242          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.765e-12
Identity = 63/228 (27.63%), Postives = 98/228 (42.98%), Query Frame = 2
Query:  176 SAHTTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQCRAGIVPVSYRRVPCRKRG-GIRFTINGFRY---FNLVLVTNVAGAGDIVRVSVKGAN-TQWLSMSRNWGQ-NWQSNAQLVGQALSFRVTGSDRRTSTSW----NVAPANWQFGQTF 829
            ++  T+YG  D      G CGYG           + +S  L+NNG  CGAC++++C   P     G   + + AT+      +   D   +   P+ +  +A P   +      G+V V Y+R+PCR  G  + + I+   Y   +  +LV  V G  DI+ V V   +  +W  M R +G  +   N       L F V GS      +W    N  PA+W  G T+
Sbjct:   29 NSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPHCSEEG---VYVVATD------SGEGDGTDFILSPKAYGRMARP-GTENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAVHDLQNPPRGTLTLRFLVYGS---AGINWIQSPNAIPADWTAGATY 243          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXPB5_ARATH (Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.011e-12
Identity = 66/241 (27.39%), Postives = 97/241 (40.25%), Query Frame = 2
Query:  170 WQSAHTTFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------CRAGIVPVSYRRVPCRKRG---GIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQ-SNAQLVGQALSFRVTGS-DRRTSTSWNVAPANWQFGQTFSGK-NFRV 850
            W +A  T+YG  +  GT GGACGYG+  ++  Y    +A   +LF +G  CGAC+ LKC  D   C      ++I             SD    C     HFDL+   F  LA+          G + VSY+R  C+       I        Y+    V    G G+   + V+ A  Q++ M       W+ S    +    + R+T +   +   +  V P  W  G  +  K NF V
Sbjct:   34 WNTAGITWYGDREGPGTTGGACGYGDAVAKHPYRCMVSAGGPSLFKDGKGCGACYRLKC--DHPLCTKKPIKVMI-------------SDECPGCTKESVHFDLSGKAFGALAKRGKGDQLRNLGELKVSYKRACCKHPKTMIAIHVDAGANPYYMSFAVKFANGDGNFACIEVQPAGGQYMKMEEMRSAVWRLSPGVPLKGPFNIRLTSAVSGKKIIAKGVIPEKWSPGAIYHSKVNFPV 259          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.011e-12
Identity = 57/219 (26.03%), Postives = 103/219 (47.03%), Query Frame = 2
Query:  203 SDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMF-LKLAQCRAGIVPVSYRRVPC---RKRGGIRF--TINGFRYFNLVLVTNVAGAGDIVRVSV-KGANTQWLSMSRNWGQNWQSNAQLVGQALSFR---VTGSDRRTSTSWNVAPANWQFGQTF 829
            S AS    GAC YG++ +  +  + AA   +++ +G  CGACF+++C  +P  C+     +++T  N         ++        R    +A P+        + GIV + YRRVPC    K+  +R   +     Y  + L+    G  ++V + + +  ++ W  M+R+ G  W ++ ++   AL FR     G D +   S  V PANW+ G+++
Sbjct:   35 SSASALSSGACAYGSMATGFFAGHIAAALPSIYKDGSGCGACFQVRC-KNPTLCSSKGTTVIVTDLN--------KTNQTDLVLSSRAFRAMAKPVVGADRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQ-GGQTEVVAIYIAQVGSSHWSYMTRSHGAVWVTD-KVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAGKSY 242          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXLA2_ORYSJ (Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12
Identity = 63/212 (29.72%), Postives = 95/212 (44.81%), Query Frame = 2
Query:  227 GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMP-MFLKLAQCRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNV-----AGAGDIVRVSVKG-ANTQWLSMSRNWGQNWQSNAQLVGQALSFRVT---GSDRR-TSTSWNVAPANWQFGQTF 829
            G+CGYG+L +   G + AA S ALF  G+ CGACF+++C  D + C+     +++T       + A+ ++          +  +A P M  +L   RA  V V Y+RVPC    G   +I            ++      G  DIV V V    ++ W  M+R++G  W S AQ     L FRV    G D +       V P  W  G+ +
Sbjct:   52 GSCGYGSLAASFNGGHLAAASPALFRGGVGCGACFQVRC-KDGKLCSTAGAKVVVT-------DEARSTNRTDLVLSAAAYAAMARPGMAAQLRTRRA--VDVEYKRVPCEYAAGRNLSIRVEEKSRPPRELSIRFLYQGGQTDIVAVDVATVGSSNWKFMTRDYGPAW-STAQAPAGPLQFRVVVTGGYDGKWVWADGEVLPRRWTAGRVY 252          
BLAST of CK935754 vs. ExPASy Swiss-Prot
Match: EXLB1_ORYSJ (Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 62/228 (27.19%), Postives = 94/228 (41.23%), Query Frame = 2
Query:  179 AHTTFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQCRAGIVPVSYRRVPCR-KRGGIRFTINGFRYFNLVLVTNV---AGAGDIVRVSV-KGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSD--RRTSTSW----NVAPANWQFGQTF 829
            +   +Y  SD  GT  GAC YG  +         + S +L+ +G+ CGAC++++C  +P +C+P    I+IT +          SD   +         +A       A    G+V + YRRV C      I F I     F   L   +    G  DI+ V + +  N     +SR  G  W + +   G  LS R+  S    R   +W    N+ P NW  G T+
Sbjct:   31 SRAAYYPNSDIKGTENGACEYG-AFGATLNNGDVSASASLYRDGVGCGACYQVRC-TNPYYCSPNGVTIVITDSG--------ASDGTDFILSQHAFTRMAQSTDAGTALLTLGVVGIEYRRVSCTYPNKNIVFKITESSNFPNYLEFEIWYQQGNQDIIAVQLCETVNLTCQLLSRTHGAVWAAVSPPSG-PLSIRMLFSSGAPRGGDTWLVPTNIVPQNWTAGATY 247          
The following BLAST results are available for this feature:
BLAST of CK935754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
EXLA1_ARATH1.351e-1227.27Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 ... [more]
EXLB1_ARATH1.765e-1227.63Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]
EXPB5_ARATH3.011e-1227.39Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 ... [more]
EXLA2_ARATH3.011e-1226.03Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 ... [more]
EXLA2_ORYSJ8.760e-1229.72Expansin-like A2 OS=Oryza sativa subsp. japonica G... [more]
EXLB1_ORYSJ3.329e-1127.19Expansin-like B1 OS=Oryza sativa subsp. japonica G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004390_H12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935754 ID=CK935754; Name=CK935754; organism=Citrus sinensis; type=EST; length=895bp
GGGGATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCT
GTCTCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTT
TTCTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGG
TGTCTTCGCCGGTGGCCCCTGGCAATCGGCCCACACCACTTTTTACGGTG
GCAGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTG
TACAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTT
CAACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCG
ACCCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACC
AACTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTG
CAACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGC
TCGCCCAGTGCCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCC
TGCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTT
CAACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCG
TGAGCGTGAAAGGGGCCAACACCCAATGGCTGAGCATGAGCCGCAACTGG
GGACAAAACTGGCAATCCAACGCTCAGCTCGTGGGCCAGGCACTTTCGTT
TAGAGTCACGGGCAGTGACAGAAGGACCTCAACCTCTTGGAACGTGGCGC
CAGCGAATTGGCAGTTCGGTCAAACCTTTTCGGGAAAGAATTTCCGCGTC
TAGTGATATTTAATCTTTTTTCAACATTTTCATGTTTCCCGCCTT
back to top