CK935759

Overview
NameCK935759
Unique NameCK935759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1849 contig Csv1_Contig1849:1..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_BDEBA (Glycine dehydrogenase [decarboxylating] OS=Bdellovibrio bacteriovorus GN=gcvP PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 3.898e-56
Identity = 104/180 (57.78%), Postives = 137/180 (76.11%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLM 540
            LP H +V   G      +  +    +APWGSA ILPIS+ YI MMG++GL +A+ ++IL+ANY+AK+LE HYP+L++G NG VAHE IVD+R +K T+GI+  DVAKRLMD+GFH PTMS+PV GTLMIEPTESESK+ELDR+ +++++IR+EIA +E GK D  NN LK APH   +LM
Sbjct:  731 LPKHSLVPEAG-----PANGISATTSAPWGSASILPISWAYITMMGAQGLRKATLVSILSANYIAKKLEAHYPVLYKGKNGLVAHECIVDVREIKKTSGIDVTDVAKRLMDFGFHAPTMSFPVAGTLMIEPTESESKKELDRFIESMVTIRKEIAAVETGKMDKENNALKNAPHTAQMLM 905          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_PSEFS (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas fluorescens (strain SBW25) GN=gcvP PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 8.685e-56
Identity = 108/178 (60.67%), Postives = 138/178 (77.53%), Query Frame = 1
Query:    7 SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLM 540
            SH      G  A E+ +  G + AAP+GSA ILPI++ YI+MMG  GL  AS++AILNANY+++RLE+HYP+L+ G NG VAHE I+DLR LK+++GI  +DVAKRL+D+GFH PTMS+PV GTLMIEPTESESKEELDR+CDA+I+IREEI  +ENG  D  +N LK APH  + L+
Sbjct:  720 SHLTPFLPGHAAMERKE--GAVCAAPFGSASILPITWMYISMMGGAGLKRASQLAILNANYISRRLEEHYPVLYTGSNGLVAHECILDLRPLKDSSGISVDDVAKRLIDFGFHAPTMSFPVAGTLMIEPTESESKEELDRFCDAMIAIREEIRAVENGTLDKDDNPLKNAPHTAAELV 895          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_HAHCH (Glycine dehydrogenase [decarboxylating] OS=Hahella chejuensis (strain KCTC 2396) GN=gcvP PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.935e-55
Identity = 102/154 (66.23%), Postives = 127/154 (82.47%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            +  I+AAPWGSA ILPIS+TYI MMG +GLTEA+K AILNANY+AKRLE HYP+L+ G  G VAHE I+D+R  K++ G+  +D+AKRL+D+GFH PTMS+PVPGTLMIEPTESES  ELDR+CDA+I+IREEI  IENG+ D+ ++ L  APH
Sbjct:  749 IAPISAAPWGSAGILPISWTYIRMMGGEGLTEATKSAILNANYIAKRLEPHYPVLYTGSQGFVAHECIIDVRPFKDSCGVTVDDIAKRLIDFGFHAPTMSFPVPGTLMIEPTESESLAELDRFCDAMIAIREEIRAIENGEYDVDHSPLHHAPH 902          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_BURM1 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=gcvP PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 2.527e-55
Identity = 102/159 (64.15%), Postives = 131/159 (82.39%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLL 537
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K ++GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESESKEELDR+ DA+I+IR+EI  +E G+AD  +N L+ APH  +++
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKESSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKEELDRFIDAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVV 922          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP1_PSEF5 (Glycine dehydrogenase [decarboxylating] 1 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 2.527e-55
Identity = 103/159 (64.78%), Postives = 130/159 (81.76%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLM 540
            G + AAP+GSA ILPI++ YI+MMG  GL  AS++AILNANY+++RLE+HYP+L+ G NG VAHE I+DLR LK+++GI  +DVAKRL+D+GFH PTMS+PV GTLMIEPTESESKEELDR+CDA+I IREEI  +ENG  D  +N LK APH  + L+
Sbjct:  740 GAVCAAPFGSASILPITWMYISMMGGAGLKRASQLAILNANYISRRLEEHYPVLYTGSNGLVAHECILDLRPLKDSSGISVDDVAKRLIDFGFHAPTMSFPVAGTLMIEPTESESKEELDRFCDAMIRIREEIRAVENGALDKDDNPLKNAPHTAAELV 898          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP1_PSEPF (Glycine dehydrogenase [decarboxylating] 1 OS=Pseudomonas fluorescens (strain Pf0-1) GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.310e-55
Identity = 103/159 (64.78%), Postives = 129/159 (81.13%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLM 540
            G + AAP+GSA ILPI++ YI MMG  GL  AS++AILNANY+++RLE+HYP+L+ G NG VAHE I+DLR LK+++GI  +DVAKRL+D+GFH PTMS+PV GTLMIEPTESESKEELDR+CDA+I IREEI  +ENG  D  +N LK APH  + L+
Sbjct:  741 GAVCAAPFGSASILPITWMYIRMMGGAGLKRASQLAILNANYISRRLEEHYPVLYTGSNGLVAHECILDLRPLKDSSGISVDDVAKRLIDFGFHAPTMSFPVAGTLMIEPTESESKEELDRFCDAMIRIREEIRAVENGTLDKDDNPLKNAPHTAAELV 899          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_PSE14 (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=gcvP PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 5.629e-55
Identity = 100/153 (65.36%), Postives = 127/153 (83.01%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            G + AAP+GSA ILPI++ YI MMG +GL  AS++AILNANY+++RLE+HYP+L+ G NG VAHE I+DLR +K+++GI  +DVAKRL+D+GFH PTMS+PV GTLMIEPTESES+EELDR+CDA+I IREEI  +ENG  D  +N LK APH
Sbjct:  743 GAVCAAPFGSASILPITWMYIRMMGGEGLKRASQLAILNANYISRRLEEHYPVLYTGTNGLVAHECILDLRPIKDSSGISVDDVAKRLIDFGFHAPTMSFPVAGTLMIEPTESESREELDRFCDAMIKIREEIRAVENGTLDKDDNPLKNAPH 895          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_BURCM (Glycine dehydrogenase [decarboxylating] OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=gcvP PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 7.352e-55
Identity = 102/159 (64.15%), Postives = 130/159 (81.76%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLL 537
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IREEI  +E G+AD  +N L+ APH  +++
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKETSGISVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIREEIRAVEEGRADREDNPLRHAPHTAAVV 922          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_BURCJ (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=gcvP PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 7.352e-55
Identity = 102/159 (64.15%), Postives = 130/159 (81.76%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLL 537
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IREEI  +E G+AD  +N L+ APH  +++
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKETSGISVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIREEIRAVEEGRADREDNPLRHAPHTAAVV 922          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_BURCH (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cenocepacia (strain HI2424) GN=gcvP PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 7.352e-55
Identity = 102/159 (64.15%), Postives = 130/159 (81.76%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLL 537
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IREEI  +E G+AD  +N L+ APH  +++
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKETSGISVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIREEIRAVEEGRADREDNPLRHAPHTAAVV 922          
The following BLAST results are available for this feature:
BLAST of CK935759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP_BDEBA3.898e-5657.78Glycine dehydrogenase [decarboxylating] OS=Bdellov... [more]
GCSP_PSEFS8.685e-5660.67Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_HAHCH1.935e-5566.23Glycine dehydrogenase [decarboxylating] OS=Hahella... [more]
GCSP_BURM12.527e-5564.15Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP1_PSEF52.527e-5564.78Glycine dehydrogenase [decarboxylating] 1 OS=Pseud... [more]
GCSP1_PSEPF4.310e-5564.78Glycine dehydrogenase [decarboxylating] 1 OS=Pseud... [more]
GCSP_PSE145.629e-5565.36Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_BURCM7.352e-5564.15Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURCJ7.352e-5564.15Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURCH7.352e-5564.15Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_A06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935759 ID=CK935759; Name=CK935759; organism=Citrus sinensis; type=EST; length=541bp
CTGCCTTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCATGGACC
AACAATGTCATGGCCTGTTCCAGGCACACTTATGATTGAACCAACTGAAA
GTGAAAGCAAGGAAGAGTTGGACAGGTATTGTGATGCTCTCATCTCCATC
AGAGAAGAAATTGCACAGATTGAAAATGGGAAGGCAGATATCCACAACAA
TGTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCTCATGG
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