CK935759

Overview
NameCK935759
Unique NameCK935759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_BURPP (Glycine dehydrogenase [decarboxylating] OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=gcvP PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.638e-54
Identity = 104/174 (59.77%), Postives = 137/174 (78.74%), Query Frame = 1
Query:   19 VSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLM 540
            +S+G   AP     +G ++ AP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AK+L  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVAKRL DYGFH PTMS+PVPGTLM+EPTESESKEELDR+ +A+I+IREEI  +E+G++D  +N LK APH  ++++
Sbjct:  756 ISSGYERAPNG---IGAVSGAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYVAKKLAPHYPVLYSGPGGLVAHECILDLRPIKETSGITVDDVAKRLADYGFHAPTMSFPVPGTLMVEPTESESKEELDRFIEAMIAIREEIRAVEDGRSDREDNPLKHAPHTAAVVI 926          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_PSESM (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas syringae pv. tomato GN=gcvP PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.139e-54
Identity = 99/153 (64.71%), Postives = 127/153 (83.01%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            G + AAP+GSA ILPI++ YI MMG +GL  AS++AILNANY+++RLE+HYP+L+ G NG VAHE I+DLR +K+++GI  +DVAKRL+D+GFH PTMS+PV GTLMIEPTESES+EELDR+CDA+I IREEI  +E+G  D  +N LK APH
Sbjct:  743 GAVCAAPFGSASILPITWMYIRMMGGEGLKRASQLAILNANYISRRLEEHYPVLYTGTNGLVAHECILDLRPIKDSSGISVDDVAKRLIDFGFHAPTMSFPVAGTLMIEPTESESREELDRFCDAMIKIREEIRAVEDGTLDKDDNPLKNAPH 895          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_BURXL (Glycine dehydrogenase [decarboxylating] OS=Burkholderia xenovorans (strain LB400) GN=gcvP PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.139e-54
Identity = 104/174 (59.77%), Postives = 136/174 (78.16%), Query Frame = 1
Query:   19 VSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLM 540
            +S+G   AP     +G ++ AP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AK+L  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVAKRL DYGFH PTMS+PVPGTLM+EPTESESKEELDR+ +A+I+IREEI  +E G++D  +N LK APH  ++++
Sbjct:  756 ISSGYERAPNG---IGAVSGAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYVAKKLAPHYPVLYSGPGGLVAHECILDLRPIKETSGITVDDVAKRLADYGFHAPTMSFPVPGTLMVEPTESESKEELDRFIEAMIAIREEIRAVEEGRSDREDNPLKHAPHTAAVVI 926          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_BURCC (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cenocepacia (strain MC0-3) GN=gcvP PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.139e-54
Identity = 101/159 (63.52%), Postives = 130/159 (81.76%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLL 537
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K ++GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IREEI  +E G+AD  +N L+ APH  +++
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKESSGISVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIREEIRAVEEGRADREDNPLRHAPHTAAVV 922          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_NITHX (Glycine dehydrogenase [decarboxylating] OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=gcvP PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 2.794e-54
Identity = 102/174 (58.62%), Postives = 131/174 (75.29%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            LP HP       PA      +G ++AAP+GSA IL ISY Y+ MMG +GLT A+++AILNANY+A+RL+ H+P+L+R V G VAHE I+D R LK   G+  +D+AKRL+DYGFH PTMS+PVPGTLMIEPTESESK ELDR+CDA+I+IR EIA+IE G+  +  + L+ APH
Sbjct:  729 LPGHPATDGATPPA------VGAVSAAPFGSASILTISYIYVLMMGGEGLTRATEVAILNANYVAQRLDPHFPVLYRNVKGRVAHECIIDPRALKAETGVTVDDIAKRLIDYGFHAPTMSFPVPGTLMIEPTESESKAELDRFCDAMIAIRREIAEIEAGRWSVEASPLRHAPH 896          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_LEPBL (Glycine dehydrogenase [decarboxylating] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=gcvP PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.649e-54
Identity = 100/157 (63.69%), Postives = 129/157 (82.17%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSL 534
            G ++AAPWGSA I+ IS+ YIA+MGS+GLT A++I+ILNANY+AKRLEK YP+L++G NG VAHE I+D+R  K +A IE EDVAKRL+DYGFH PTMS+PVPGTLMIEPTESES EELDR+C+A++ I +EI  ++NG  D  +N LK +PH  ++
Sbjct:  754 GAVSAAPWGSASIVLISWIYIALMGSEGLTNATRISILNANYIAKRLEKAYPVLYKGKNGFVAHECILDVRPFKKSAEIEVEDVAKRLIDYGFHAPTMSFPVPGTLMIEPTESESLEELDRFCEAMLLIHQEILDVQNGTLDKIDNPLKNSPHTAAM 910          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_LEPBJ (Glycine dehydrogenase [decarboxylating] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=gcvP PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.649e-54
Identity = 100/157 (63.69%), Postives = 129/157 (82.17%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSL 534
            G ++AAPWGSA I+ IS+ YIA+MGS+GLT A++I+ILNANY+AKRLEK YP+L++G NG VAHE I+D+R  K +A IE EDVAKRL+DYGFH PTMS+PVPGTLMIEPTESES EELDR+C+A++ I +EI  ++NG  D  +N LK +PH  ++
Sbjct:  754 GAVSAAPWGSASIVLISWIYIALMGSEGLTNATRISILNANYIAKRLEKAYPVLYKGKNGFVAHECILDVRPFKKSAEIEVEDVAKRLIDYGFHAPTMSFPVPGTLMIEPTESESLEELDRFCEAMLLIHQEILDVQNGTLDKIDNPLKNSPHTAAM 910          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIC (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvP PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.765e-54
Identity = 100/158 (63.29%), Postives = 130/158 (82.28%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLL 537
            G ++AAPWGSA I+ IS+ YIA+MGS+GLT A++ +ILNANY+AKRLEK YP+L++G NG VAHE I+DLR  K +AGIE EDVAKRL+DYGFH PTMS+PVPGTLMIEPTESES EELDR+C+A++ I +EI  +++G  D  +N LK +PH  +++
Sbjct:  754 GAVSAAPWGSASIVLISWVYIALMGSEGLTNATRNSILNANYIAKRLEKVYPVLYKGKNGFVAHECILDLRPFKKSAGIEVEDVAKRLIDYGFHAPTMSFPVPGTLMIEPTESESLEELDRFCEAMLLIYQEILDVQSGTLDKTDNPLKNSPHTAAMV 911          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_BURTA (Glycine dehydrogenase [decarboxylating] OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=gcvP PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.765e-54
Identity = 100/159 (62.89%), Postives = 131/159 (82.39%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLL 537
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFVAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVV 922          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_BURS3 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia sp. (strain 383) GN=gcvP PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.765e-54
Identity = 100/159 (62.89%), Postives = 130/159 (81.76%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLL 537
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K ++GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKESSGISVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVV 922          
The following BLAST results are available for this feature:
BLAST of CK935759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP_BURPP1.638e-5459.77Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_PSESM2.139e-5464.71Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_BURXL2.139e-5459.77Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURCC2.139e-5463.52Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_NITHX2.794e-5458.62Glycine dehydrogenase [decarboxylating] OS=Nitroba... [more]
GCSP_LEPBL3.649e-5463.69Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_LEPBJ3.649e-5463.69Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_LEPIC4.765e-5463.29Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_BURTA4.765e-5462.89Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURS34.765e-5462.89Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_A06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935759 ID=CK935759; Name=CK935759; organism=Citrus sinensis; type=EST; length=541bp
CTGCCTTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCATGGACC
AACAATGTCATGGCCTGTTCCAGGCACACTTATGATTGAACCAACTGAAA
GTGAAAGCAAGGAAGAGTTGGACAGGTATTGTGATGCTCTCATCTCCATC
AGAGAAGAAATTGCACAGATTGAAAATGGGAAGGCAGATATCCACAACAA
TGTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCTCATGG
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