CK935759

Overview
NameCK935759
Unique NameCK935759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_SYNS9 (Glycine dehydrogenase [decarboxylating] OS=Synechococcus sp. (strain CC9902) GN=gcvP PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.415e-52
Identity = 100/180 (55.56%), Postives = 130/180 (72.22%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLM 540
            LP HP  +       + +  +G ++AA  GSA ILPIS+ Y+ MMG+  L +AS +A+L+ANY+A RL+ H+P+LFRG  G VAHE I+DLR LK  AGI+ +D+AKRLMDYGFH PT+SWPV GT+M+EPTESES  ELDR+ DALI+IR+E+  IE G  D  NN LK APH  + +M
Sbjct:  731 LPGHPFEN-------QTASAIGPVSAAALGSASILPISWMYLRMMGADALRQASAVALLSANYLAHRLDDHFPVLFRGATGRVAHECILDLRPLKRDAGIDVDDIAKRLMDYGFHAPTVSWPVAGTVMVEPTESESLSELDRFADALIAIRDEVRAIETGAMDALNNPLKRAPHTMAAVM 903          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_RALME (Glycine dehydrogenase [decarboxylating] OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=gcvP PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.415e-52
Identity = 100/160 (62.50%), Postives = 128/160 (80.00%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLM 540
            +G ++AAP+GSA ILPIS+ YIAMMGS GLT A++ AIL ANY+A+RL  H+P+L+ G +G VAHE I+DLR L+   GI  EDVAKRLMDYGFH PTMS+PVPGTLMIEPTESE+  ELDR+ DA+I+IR EIA++E+G  D  +N LK APH  ++++
Sbjct:  761 IGGVSAAPFGSASILPISWMYIAMMGSAGLTAATENAILTANYVARRLSPHFPVLYTGQHGLVAHECILDLRPLQKATGISNEDVAKRLMDYGFHAPTMSFPVPGTLMIEPTESEALHELDRFIDAMIAIRGEIARVEDGSFDREDNPLKHAPHTAAVVV 920          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_VIBCM (Glycine dehydrogenase [decarboxylating] OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gcvP PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 7.608e-52
Identity = 98/151 (64.90%), Postives = 120/151 (79.47%), Query Frame = 1
Query:   70 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            ++AA  GSA ILPIS+ YIAMMG+ GL EA+K+AILNANY+ +RL  HYPIL+RG NG VAHE I+D+R LK   GI  ED+AKRLMDYGFH PTMS+PV GTLM+EPTESE   ELDR+CDALI+IR EI +++NG+  + +N L  APH
Sbjct:  745 VSAADLGSASILPISWAYIAMMGADGLAEATKLAILNANYVMERLRPHYPILYRGANGRVAHECIIDIRPLKEETGISEEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEDLAELDRFCDALIAIRGEIDKVKNGEWPLESNPLVHAPH 895          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_VIBC3 (Glycine dehydrogenase [decarboxylating] OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=gcvP PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 7.608e-52
Identity = 98/151 (64.90%), Postives = 120/151 (79.47%), Query Frame = 1
Query:   70 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            ++AA  GSA ILPIS+ YIAMMG+ GL EA+K+AILNANY+ +RL  HYPIL+RG NG VAHE I+D+R LK   GI  ED+AKRLMDYGFH PTMS+PV GTLM+EPTESE   ELDR+CDALI+IR EI +++NG+  + +N L  APH
Sbjct:  745 VSAADLGSASILPISWAYIAMMGADGLAEATKLAILNANYVMERLRPHYPILYRGANGRVAHECIIDIRPLKEETGISEEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEDLAELDRFCDALIAIRGEIDKVKNGEWPLESNPLVHAPH 895          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_ROSDO (Glycine dehydrogenase [decarboxylating] OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=gcvP PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 7.608e-52
Identity = 93/153 (60.78%), Postives = 121/153 (79.08%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            G ++AAP+GS  +LPIS+ Y  MMG  GLT+A+++AILNANY+AKRLE  + +L+RG  G VAHE ++D+R  + +AG+  ED+AKRL+D GFH PTMSWPV GTLM+EPTESE+K ELDR+CDA+++IR EIA IE G+ D  NN LK APH
Sbjct:  736 GAVSAAPFGSPSLLPISWAYCLMMGGDGLTQATRVAILNANYIAKRLEGAFDVLYRGPTGRVAHECVIDVRPFEKSAGVSVEDIAKRLIDCGFHAPTMSWPVAGTLMVEPTESETKAELDRFCDAMLAIRAEIADIEEGRMDAANNPLKNAPH 888          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_RALSO (Glycine dehydrogenase [decarboxylating] OS=Ralstonia solanacearum GN=gcvP PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 7.608e-52
Identity = 98/165 (59.39%), Postives = 130/165 (78.79%), Query Frame = 1
Query:   46 EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLM 540
            + SQ +G ++AAP+GSA ILPIS+ YIAMMG+ GLT A++ AIL+ANY+A+RL  +YP+L+ G +G VAHE I+D+R L+  +GI  ED+AKRLMD+GFH PTMS+PVPGTLMIEPTESE K ELDR+ DA+I+IR E+ Q+ +G  D  +N LK APH   ++M
Sbjct:  764 DASQNIGAVSAAPFGSASILPISWMYIAMMGAAGLTAATEAAILSANYVARRLSPYYPVLYTGAHGLVAHECILDIRPLQKESGISNEDIAKRLMDFGFHAPTMSFPVPGTLMIEPTESEPKVELDRFIDAMIAIRGEVDQVISGAFDREDNPLKHAPHTAQVVM 928          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_STRCO (Glycine dehydrogenase [decarboxylating] OS=Streptomyces coelicolor GN=gcvP PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 9.936e-52
Identity = 98/179 (54.75%), Postives = 130/179 (72.63%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLL 537
            LP+HP+      PA      +G I+AAPWGSA ILPIS++Y+ +MG +GL  A+++A+L+ANY+AKRLE H+P+L+ G  G VAHE I+DLR L    G+  +DVAKRL+DYGFH PTMS+PV GTLMIEPTESE   ELDR+C+A+I+IR EI ++ +G     +N L+GAPH    L
Sbjct:  735 LPNHPLQ-----PAAGPQTGVGPISAAPWGSAGILPISWSYVRLMGGEGLKRATQVAVLSANYIAKRLEPHFPVLYNGPGGLVAHECIIDLRPLTKATGVSVDDVAKRLIDYGFHAPTMSFPVAGTLMIEPTESEDLAELDRFCEAMIAIRAEIEKVGSGAWPADDNPLRGAPHTADAL 908          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_ALISL (Glycine dehydrogenase [decarboxylating] OS=Aliivibrio salmonicida (strain LFI1238) GN=gcvP PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 9.936e-52
Identity = 97/157 (61.78%), Postives = 121/157 (77.07%), Query Frame = 1
Query:   70 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLM 540
            ++AA  GSA ILPIS+ YIAMMG  GLTEA+K+AILNANY+  RL  HYP+L+RG NG +AHE I+D+R LK   GI  ED+AKRLMD+GFH PTMS+PV GTLMIEPTESE   ELDR+C+A+I+IREE+ +++ G+  + NN L  APH    LM
Sbjct:  746 VSAADLGSASILPISWAYIAMMGEMGLTEATKVAILNANYVMDRLRPHYPVLYRGTNGRIAHECIIDIRPLKEATGISEEDIAKRLMDFGFHAPTMSFPVAGTLMIEPTESEDLAELDRFCEAMIAIREEMNKVQQGEWPLDNNPLVNAPHTQVDLM 902          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_PROMA (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus GN=gcvP PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.695e-51
Identity = 97/161 (60.25%), Postives = 126/161 (78.26%), Query Frame = 1
Query:   40 APEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            A + +  +G I+A+P GSA ILPIS+ YI MMG+ GL +AS +AIL+ANY+A +L+ ++ +LF+  NG VAHE I+DLR +K   GIE +DVAKRLMDYGFH PT+SWPV GTLMIEPTESES EE++R+C+A+ISIR EI  IE+G  D+ NN L+ APH
Sbjct:  744 ASDNNAAIGAISASPLGSASILPISWMYIRMMGADGLRQASSLAILSANYIANKLDPYFQVLFKAPNGKVAHECILDLRSIKRITGIEVDDVAKRLMDYGFHAPTISWPVAGTLMIEPTESESFEEINRFCEAMISIRSEIDAIESGITDLSNNPLRLAPH 904          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP1_COLP3 (Glycine dehydrogenase [decarboxylating] 1 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.891e-51
Identity = 97/174 (55.75%), Postives = 132/174 (75.86%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            LP H +++       E ++  G +++AP+GSA ILPI+Y YIA++G KG+T+A+K AI NANY++K+L +HYPIL+ G NG VAHE IVDLR LK ++G+   D+AKRLMDYGFH PTMS+PV GT MIEPTESESK ELDR+ +A++ IR+E+ ++E+G+    NN L  APH
Sbjct:  739 LPDHALINVD-----EATKGNGAVSSAPFGSASILPITYLYIALLGKKGVTDATKYAITNANYVSKKLSEHYPILYSGKNGRVAHECIVDLRPLKASSGVTEVDMAKRLMDYGFHSPTMSFPVAGTFMIEPTESESKVELDRFIEAMVCIRDEVRKVESGEWASDNNPLHNAPH 907          
The following BLAST results are available for this feature:
BLAST of CK935759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP_SYNS93.415e-5255.56Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_RALME3.415e-5262.50Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_VIBCM7.608e-5264.90Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_VIBC37.608e-5264.90Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_ROSDO7.608e-5260.78Glycine dehydrogenase [decarboxylating] OS=Roseoba... [more]
GCSP_RALSO7.608e-5259.39Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_STRCO9.936e-5254.75Glycine dehydrogenase [decarboxylating] OS=Strepto... [more]
GCSP_ALISL9.936e-5261.78Glycine dehydrogenase [decarboxylating] OS=Aliivib... [more]
GCSP_PROMA1.695e-5160.25Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP1_COLP32.891e-5155.75Glycine dehydrogenase [decarboxylating] 1 OS=Colwe... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_A06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935759 ID=CK935759; Name=CK935759; organism=Citrus sinensis; type=EST; length=541bp
CTGCCTTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCATGGACC
AACAATGTCATGGCCTGTTCCAGGCACACTTATGATTGAACCAACTGAAA
GTGAAAGCAAGGAAGAGTTGGACAGGTATTGTGATGCTCTCATCTCCATC
AGAGAAGAAATTGCACAGATTGAAAATGGGAAGGCAGATATCCACAACAA
TGTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCTCATGG
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