CK935783

Overview
NameCK935783
Unique NameCK935783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: ARL10_HUMAN (ADP-ribosylation factor-like protein 10 OS=Homo sapiens GN=ARL10 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.436e-17
Identity = 51/134 (38.06%), Postives = 79/134 (58.96%), Query Frame = 3
Query:  144 KEMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELGDAVLLVFANKQDLPNAMNATEITDKLGLHSL 542
            ++  +L++GLD AGK+T L  L     +   IPT GFN   +  K+    + ++GG   +R  W+ +      L+FVVDS DR R+  AR ELH++L++D   D  ++V ANKQDL  AM+  E+  +LGL ++
Sbjct:   76 EQREVLVLGLDGAGKSTFLRVLSGKPPLEGHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWARQELHKLLDKDP--DLPVVVVANKQDLSEAMSMGELQRELGLQAI 207          
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: ARL10_MOUSE (ADP-ribosylation factor-like protein 10 OS=Mus musculus GN=Arl10 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.426e-17
Identity = 54/156 (34.62%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  144 KEMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELGDAVLLVFANKQDLPNAMNATEITDKLG-LHSLRQRH-WYIQSTCATSGEGLYE 602
            ++  +L++GLD +GK+T L  L     +   +PT GFN   +  KN    + ++G    +R  W+ +      L+F+VDS DR R+  AR EL ++L+ D   D  +++ ANKQDL  AMN  E+  +LG L S  QR  + + ++ A +G G  E
Sbjct:   75 EQREVLVLGLDGSGKSTFLRMLAGKPPVEGHVPTWGFNSVRLPTKNFEVDLLEIGDSQNLRFYWKEFVNEVDVLVFMVDSTDRLRLPWARQELQKLLDRDP--DLPVVIVANKQDLSGAMNMVELQQELGLLASYNQREVFLLAASIAPAGSGFGE 228          
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: CIN4_YEAST (GTP-binding protein CIN4 OS=Saccharomyces cerevisiae GN=CIN4 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.579e-16
Identity = 49/137 (35.77%), Postives = 80/137 (58.39%), Query Frame = 3
Query:  144 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE--LG-DAVLLVFANKQDLPNAMNATEITDKLGLH 536
            KE+R L++GLD +GK+TI+ KL   +       +PT+GF + ++  K+++ ++WD+GGQ  +RP W +YF  TQ +I+ +D +   R  E   EL  ++N DE  +G +  ++V  NK DL        + DK  LH
Sbjct:   15 KEIRCLILGLDNSGKSTIVNKLLPKDEQNNDGIMPTVGFQIHSLMIKDVTISLWDIGGQRTLRPFWDNYFDKTQAMIWCIDVSLSMRFDETLQELKELINRDENRIGYECAVIVVLNKIDL--------VEDKSELH 143          
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.023e-15
Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 3
Query:  141 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELGDAVLLVFANKQDLPNAMNATEITDKLGL 533
            +K  +IL++GLD AGKT++L+ L    +  ++ PT GF+   +  ++      ++GG    R  W  Y      LIFVVDS D  R+ EA+  LH+++  + +    L+VFANKQDL  A + T+I + L L
Sbjct:   16 EKNKQILVLGLDGAGKTSVLHSLASNRVQHSVAPTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLIAANPV--LPLVVFANKQDLEAAYHITDIHEALAL 145          
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.336e-15
Identity = 51/141 (36.17%), Postives = 81/141 (57.45%), Query Frame = 3
Query:  105 LTFTK-LFSRLFAKKEMRILMVGLDAAGKTTILYKLK--LGEIVTT---------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELGDAVLLVFANKQDL 488
            ++F K LF  L  KK   ++++G++  GKTT+LY +     E +TT         IPT GFNVE++  + + F +WD+GG++  R  +RHY       +IFV DS+D + + E++ E   + N+  L +   L+ ANKQDL
Sbjct:    5 ISFIKNLFGFLTIKK---VMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDL 142          
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = 3
Query:  111 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELGDAVLLVFANKQDL 488
            F      LF K    IL +G+D AGKTT++ KLK       +PT   +   +E  N+   V D+GG    R  WR YF +  G++F+VD +D +R  E R+    +L+ ++    V+L+  NK DL
Sbjct:   24 FQNFVKSLFGKPSS-ILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVREAYETVLSLEKRAPVVVLM--NKIDL 146          
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.081e-12
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  141 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 434
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VDS D++R  E++ EL  +L+
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLS 115          
The following BLAST results are available for this feature:
BLAST of CK935783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARL10_HUMAN2.436e-1738.06ADP-ribosylation factor-like protein 10 OS=Homo sa... [more]
ARL10_MOUSE5.426e-1734.62ADP-ribosylation factor-like protein 10 OS=Mus mus... [more]
CIN4_YEAST1.579e-1635.77GTP-binding protein CIN4 OS=Saccharomyces cerevisi... [more]
ARL9_HUMAN1.023e-1536.36ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]
ARLX_DICDI1.336e-1536.17ADP-ribosylation factor-like protein DDB_G0292332 ... [more]
SAR1_ENCCU2.359e-1234.92Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]
SAR1_TOBAC3.081e-1236.73GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004390_F09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935783 ID=CK935783; Name=CK935783; organism=Citrus sinensis; type=EST; length=773bp
GGGGCAAACCATTTTCCTTTCGACGAAGCTCTTTCTCTTGACTCGACNNN
NAACGGNAAAATCTAAATCCATCACAAGTTAATTAACAACAGCCAGAGAT
GGGATTGACGTTCACGAAGCTGTTTAGTCGGTTATTTGCGAAGAAGGAGA
TGCGAATTCTGATGGTGGGTCTCGACGCCGCCGGTAAGACCACTATTTTG
TACAAGCTTAAGCTCGGTGAGATCGTCACCACCATCCCTACAATCGGTTT
TAATGTGGAGACGGTTGAATACAAGAACATTAGCTTCACGGTTTGGGATG
TCGGAGGTCAGGACAAGATCCGTCCATTGTGGAGGCACTATTTTCAGAAC
ACTCAGGGCCTCATTTTTGTGGTGGATAGCAATGACAGGGATAGAGTAGT
TGAGGCAAGGGATGAGTTGCACCGAATGTTGAATGAGGATGAATTGGGGG
ATGCTGTTCTGCTTGTATTTGCTAACAAACAAGATCTTCCGAATGCAATG
AATGCTACAGAAATAACTGACAAGCTCGGTCTTCATTCTCTTCGCCAGCG
ACACTGGTATATCCAGAGCACATGTGCAACCTCTGGAGAGGGTCTTTACG
AAGGGTTGGATTGGCTTTCCAACAACATCGCTAGCAAGGCTTGAATGAAG
CAGTGAAGATTCTGGCTCCTCTTTTAGATTTCGTTATGGCTTATACCTAT
TCTAGGTATTCTGAAGAAGATAGTTTCCCTTTTGTTCAGTCACTTCTATA
ACAGCATAATGTTTGTTGAAAAT
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