CK935783

Overview
NameCK935783
Unique NameCK935783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 8.563e-55
Identity = 103/180 (57.22%), Postives = 133/180 (73.89%), Query Frame = 3
Query:   99 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELGDAVLLVFANKQDLPNAMNATEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 638
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++ EL  ML E+EL  A+L+VFANKQD+  AM  +E+ + LGL +L+ R W I  T AT G GL E ++WL   + S+
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.118e-54
Identity = 103/180 (57.22%), Postives = 133/180 (73.89%), Query Frame = 3
Query:   99 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELGDAVLLVFANKQDLPNAMNATEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 638
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++ EL  ML E+EL  A+L+VFANKQD+  AM  +E+ + LGL +L+ R W I  T AT G GL E ++WL   + S+
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.118e-54
Identity = 103/180 (57.22%), Postives = 133/180 (73.89%), Query Frame = 3
Query:   99 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELGDAVLLVFANKQDLPNAMNATEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 638
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++ EL  ML E+EL  A+L+VFANKQD+  AM  +E+ + LGL +L+ R W I  T AT G GL E ++WL   + S+
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.250e-54
Identity = 101/166 (60.84%), Postives = 127/166 (76.51%), Query Frame = 3
Query:  141 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELGDAVLLVFANKQDLPNAMNATEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 635
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDR+ EA  EL ++L E EL DA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  + +
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 567          
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.250e-54
Identity = 101/166 (60.84%), Postives = 127/166 (76.51%), Query Frame = 3
Query:  141 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELGDAVLLVFANKQDLPNAMNATEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 635
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDR+ EA  EL ++L E EL DA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  + +
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 567          
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 209.92 bits (533), Expect = 1.236e-53
Identity = 101/174 (58.05%), Postives = 132/174 (75.86%), Query Frame = 3
Query:   99 MGLTFTKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELGDAVLLVFANKQDLPNAMNATEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 617
            MG  F+ +F +L+ + KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YKN+   VWD+GGQ  IRP WR Y+ +T  +IFVVDS D+DR+  A  ELH ML E+EL DA LLVFANKQD P A++A+E++ +L L  L+ R W I ++ A  GEG+ EGLDWL
Sbjct:    1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174          
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.615e-53
Identity = 105/180 (58.33%), Postives = 135/180 (75.00%), Query Frame = 3
Query:  105 LTFTKLFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELGDAVLLVFANKQDLPNAMNATEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 635
            +TFTK  +R++   K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVG + K+RPLW+HY+ NTQ ++FVVDS+ RDR+ EA  EL ++L E EL DA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  + +
Sbjct:  369 VTFTK-DNRVYIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 547          
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 2.109e-53
Identity = 100/177 (56.50%), Postives = 135/177 (76.27%), Query Frame = 3
Query:   99 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELGDAVLLVFANKQDLPNAMNATEITDKLGLH-SLRQRHWYIQSTCATSGEGLYEGLDWLSNN 626
            MG + +K+  +LF  KEM+ILM+GLD AGKTTILYKLKL +I T+ PT+GFNVETV YKN+ F +WDVGGQ ++RPLWRHYF  T  LIFV+DS+ R+R+ EA++EL+ ++ E E+ + VLLV+ANKQDL +AM   E++D L L  +L+ + W +  + A SG+GL EGL W+SNN
Sbjct:    1 MGNSISKVLGKLFGSKEMKILMLGLDKAGKTTILYKLKLNKIKTSTPTVGFNVETVTYKNVKFNMWDVGGQQRLRPLWRHYFPATTALIFVIDSSARNRMEEAKEELYSIIGEKEMENVVLLVWANKQDLKDAMKPQEVSDFLELEKNLKNQPWCVIGSNALSGQGLVEGLSWISNN 177          
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 204.142 bits (518), Expect = 6.785e-52
Identity = 98/172 (56.98%), Postives = 125/172 (72.67%), Query Frame = 3
Query:  123 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELGDAVLLVFANKQDLPNAMNATEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 638
            F  L   +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVE V YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++DEL  ML E+EL  A+L+V ANKQD+   M   E+   LGL +L+ R + I  T AT GEGL + +DWLSN + S+
Sbjct:    8 FRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQSR 179          
BLAST of CK935783 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 8.861e-52
Identity = 102/172 (59.30%), Postives = 123/172 (71.51%), Query Frame = 3
Query:  123 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELGDAVLLVFANKQDLPNAMNATEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 638
            F  LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVE VEYKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRV  +R EL  ML EDEL  AVL V ANKQD+   +  TE+   LGL +LR R   I  T A+ GEGL   +DWL+N +  K
Sbjct:    8 FRGLFGAREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVEYKNLKFQVWDLGGQTSIRPYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAVLANKQDIAGCLTETEVYKALGLDALRNRTIQIFKTSASKGEGLDPAMDWLANQLQQK 179          
The following BLAST results are available for this feature:
BLAST of CK935783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARL1_BOVIN8.563e-5557.22ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARL1_RAT1.118e-5457.22ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE1.118e-5457.22ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARD1_MOUSE4.250e-5460.84GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN4.250e-5460.84GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARL1_YEAST1.236e-5358.05ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARD1_RAT1.615e-5358.33GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARF3_YEAST2.109e-5356.50ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]
ARL1_DROME6.785e-5256.98ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]
ARL1_CAEEL8.861e-5259.30ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004390_F09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935783 ID=CK935783; Name=CK935783; organism=Citrus sinensis; type=EST; length=773bp
GGGGCAAACCATTTTCCTTTCGACGAAGCTCTTTCTCTTGACTCGACNNN
NAACGGNAAAATCTAAATCCATCACAAGTTAATTAACAACAGCCAGAGAT
GGGATTGACGTTCACGAAGCTGTTTAGTCGGTTATTTGCGAAGAAGGAGA
TGCGAATTCTGATGGTGGGTCTCGACGCCGCCGGTAAGACCACTATTTTG
TACAAGCTTAAGCTCGGTGAGATCGTCACCACCATCCCTACAATCGGTTT
TAATGTGGAGACGGTTGAATACAAGAACATTAGCTTCACGGTTTGGGATG
TCGGAGGTCAGGACAAGATCCGTCCATTGTGGAGGCACTATTTTCAGAAC
ACTCAGGGCCTCATTTTTGTGGTGGATAGCAATGACAGGGATAGAGTAGT
TGAGGCAAGGGATGAGTTGCACCGAATGTTGAATGAGGATGAATTGGGGG
ATGCTGTTCTGCTTGTATTTGCTAACAAACAAGATCTTCCGAATGCAATG
AATGCTACAGAAATAACTGACAAGCTCGGTCTTCATTCTCTTCGCCAGCG
ACACTGGTATATCCAGAGCACATGTGCAACCTCTGGAGAGGGTCTTTACG
AAGGGTTGGATTGGCTTTCCAACAACATCGCTAGCAAGGCTTGAATGAAG
CAGTGAAGATTCTGGCTCCTCTTTTAGATTTCGTTATGGCTTATACCTAT
TCTAGGTATTCTGAAGAAGATAGTTTCCCTTTTGTTCAGTCACTTCTATA
ACAGCATAATGTTTGTTGAAAAT
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