CK935784

Overview
NameCK935784
Unique NameCK935784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2256 contig Csv1_Contig2256:5..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: SUFE_YERPN (Cysteine desulfuration protein sufE OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=sufE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 39/133 (29.32%), Postives = 68/133 (51.13%), Query Frame = 1 
Query:  265 PKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKV-TPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVEL 660
            P   ++++ F      + KY  ++  G  L PL  + +  EN + GC SQVW+   L  + +V++  DSD+ + KGL A++     +   ++I+ +    F   L L Q LTPSR+ G   M++ ++ K   L
Sbjct:    5 PDRDKLIRNFSRCLNWEEKYLYIIELGGQLAPLTEQQRHPENLISGCQSQVWIAMTLSAEGHVIFAGDSDAAIVKGLVAVVFILYHDLTPQQIISLDVRPFFADLALSQHLTPSRSQGLEAMIRAIRTKVANL 137
[Close]
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: SUFE_YERPG (Cysteine desulfuration protein sufE OS=Yersinia pestis bv. Antiqua (strain Angola) GN=sufE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 39/133 (29.32%), Postives = 68/133 (51.13%), Query Frame = 1 
Query:  265 PKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKV-TPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVEL 660
            P   ++++ F      + KY  ++  G  L PL  + +  EN + GC SQVW+   L  + +V++  DSD+ + KGL A++     +   ++I+ +    F   L L Q LTPSR+ G   M++ ++ K   L
Sbjct:    5 PDRDKLIRNFSRCLNWEEKYLYIIELGGQLAPLTEQQRHPENLISGCQSQVWIAMTLSAEGHVIFAGDSDAAIVKGLVAVVFILYHDLTPQQIISLDVRPFFADLALSQHLTPSRSQGLEAMIRAIRTKVANL 137
[Close]
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: SUFE_YERPE (Cysteine desulfuration protein sufE OS=Yersinia pestis GN=sufE PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 39/133 (29.32%), Postives = 68/133 (51.13%), Query Frame = 1 
Query:  265 PKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKV-TPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVEL 660
            P   ++++ F      + KY  ++  G  L PL  + +  EN + GC SQVW+   L  + +V++  DSD+ + KGL A++     +   ++I+ +    F   L L Q LTPSR+ G   M++ ++ K   L
Sbjct:    5 PDRDKLIRNFSRCLNWEEKYLYIIELGGQLAPLTEQQRHPENLISGCQSQVWIAMTLSAEGHVIFAGDSDAAIVKGLVAVVFILYHDLTPQQIISLDVRPFFADLALSQHLTPSRSQGLEAMIRAIRTKVANL 137
[Close]
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: SUFE_YERPB (Cysteine desulfuration protein sufE OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=sufE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 39/133 (29.32%), Postives = 68/133 (51.13%), Query Frame = 1 
Query:  265 PKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKV-TPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVEL 660
            P   ++++ F      + KY  ++  G  L PL  + +  EN + GC SQVW+   L  + +V++  DSD+ + KGL A++     +   ++I+ +    F   L L Q LTPSR+ G   M++ ++ K   L
Sbjct:    5 PDRDKLIRNFSRCLNWEEKYLYIIELGGQLAPLTEQQRHPENLISGCQSQVWIAMTLSAEGHVIFAGDSDAAIVKGLVAVVFILYHDLTPQQIISLDVRPFFADLALSQHLTPSRSQGLEAMIRAIRTKVANL 137
[Close]
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: SUFE_YERPA (Cysteine desulfuration protein sufE OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=sufE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 39/133 (29.32%), Postives = 68/133 (51.13%), Query Frame = 1 
Query:  265 PKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKV-TPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVEL 660
            P   ++++ F      + KY  ++  G  L PL  + +  EN + GC SQVW+   L  + +V++  DSD+ + KGL A++     +   ++I+ +    F   L L Q LTPSR+ G   M++ ++ K   L
Sbjct:    5 PDRDKLIRNFSRCLNWEEKYLYIIELGGQLAPLTEQQRHPENLISGCQSQVWIAMTLSAEGHVIFAGDSDAAIVKGLVAVVFILYHDLTPQQIISLDVRPFFADLALSQHLTPSRSQGLEAMIRAIRTKVANL 137
[Close]
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: SUFE_PHOLL (Cysteine desulfuration protein sufE OS=Photorhabdus luminescens subsp. laumondii GN=sufE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 37/134 (27.61%), Postives = 69/134 (51.49%), Query Frame = 1 
Query:  265 PKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKV-TPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVELV 663
            P   ++++ F   +  + +Y  ++  G  L PL    +  EN + GC SQVW+   ++ Q  V +  DSD+ + KGL A++      +  +EI+ +   ++   L L+Q LTPSR  G   M+  ++ +  ++V
Sbjct:    5 PDTNKLLRNFSRCRNWEERYLYMIELGAKLPPLTDEQRQPENLIAGCQSQVWILLRMNHQNKVEFIGDSDAAIVKGLVAIVFILFQGKTTQEILDLDVTEYFGKLSLEQHLTPSRTQGLHAMIHAIRNRTSKMV 138
The following BLAST results are available for this feature:
BLAST of CK935784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SUFE_YERPN3.670e-1129.32Cysteine desulfuration protein sufE OS=Yersinia pe... [more]
SUFE_YERPG3.670e-1129.32Cysteine desulfuration protein sufE OS=Yersinia pe... [more]
SUFE_YERPE3.670e-1129.32Cysteine desulfuration protein sufE OS=Yersinia pe... [more]
SUFE_YERPB3.670e-1129.32Cysteine desulfuration protein sufE OS=Yersinia ps... [more]
SUFE_YERPA3.670e-1129.32Cysteine desulfuration protein sufE OS=Yersinia pe... [more]
SUFE_PHOLL3.670e-1127.61Cysteine desulfuration protein sufE OS=Photorhabdu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004390_F11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935784 ID=CK935784; Name=CK935784; organism=Citrus sinensis; type=EST; length=805bp
GGGGAATGCTCTGTCTTTTGAGCGTTACGGTGCGGTGTCCGTTTCTCTCT
CGATTGCTCTGGCTCTCTAGCAATGGCTTCATCATCAATCTCCTCTTGTC
TTCGCTTATTCACAACCAGATCATTCCTTTCACCAAAACCCCGCAAAAAT
CTCTCTTTCTTTTACAAACCCACAAGCTTCGCCAAAAACCCACTCTCAAA
ATCACTCGTTGCAGTCTCATCATCAACCTCCACGTCACCAATACAGCCCG
TCGAAGACCTCCCGCCAAAGCTTCAAGAAATCGTCCAGCTCTTTCAGTCA
GTGCAAGAACCCAAAGCCAAGTACGAGCAGCTACTGTTCTACGGAAAAAG
TTTGAAACCCCTCGATACCCGGTTCAAAACGAGGGAGAACAAAGTGGAAG
GCTGCGTTTCTCAGGTCTGGGTCAGGGCTTATCTTGATGACCAAAAGAAC
GTTGTGTACGAAGCTGATTCTGATTCCGTTTTGACCAAAGGATTGGCGGC
TCTGCTTGTTCAAGGCTTGTCTAATAGGCCTGTAGAGGAGATTGTGAAAG
TTACGCCTGATTTTGTTGTGCTTCTTGGGTTGCAACAGAGTTTGACTCCT
TCTAGGAATAATGGGTTCTTGAATATGTTGAAGTTGATGCAAAAGAAAGC
AGTTGAATTGGTTTTTGAGAGTGAGAAGGCTGGTGGCTCTGTTGAGGGAT
CGAATTTGGGGTCGAAAAATAGTAAAAATTTGACTTTGGAGAGGAAAGGT
GATGGTGTTGGAGGTTTGGAGTCAAAGGTTGAATCAAGCTCTCAAGTGGG
TAGTG
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