CK935790
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METTH (50S ribosomal protein L6P OS=Methanobacterium thermoautotrophicum GN=rpl6p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.025e-23 Identity = 70/184 (38.04%), Postives = 102/184 (55.43%), Query Frame = 3 Query: 87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635 L E + IPDGV V I+ V V+GP+ +LSR F H + D K+ ++ F +K A I T +H+ N+ITGVT+G+RY+M+ VYAHFP++ + + IE NFLGE+ R + V +VK DE+ + G + E V ++ A I Q +K +D R F DGIY+ K Sbjct: 6 LIREEIPIPDGVDVTIDGGVT-VKGPKWELSRKFNHSEISMAVEDD------KVVLEVKFPKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVAGDKVVIE--NFLGERHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIYLVSK 176
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.339e-23 Identity = 68/184 (36.96%), Postives = 99/184 (53.80%), Query Frame = 3 Query: 87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638 L E ++IP V V+IN + V+ +L RD + + T K+ I+ F + +A + T SH+ N+I GVT G+ YK+ YAHFP+ S N + I NFLGEK R ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 6 LIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEI------STEDGKVVIECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METHJ (50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl6p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.339e-23 Identity = 65/180 (36.11%), Postives = 98/180 (54.44%), Query Frame = 3 Query: 102 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638 + IP GV V ++ V+ V+GP+G L RD + + + G ++ + ++ + T SH N+ TGVTKGY Y M+ VY+HFPI + + +EI NFLGEK R +L G TV KV DE+ + G D E+V +AA I + ++++D R F DGIY+ +S Sbjct: 7 VSIPSGVSVTMDGTVLHVKGPKGNLQRDMWYPGIEITI------GSEDVRFTTESQKKAVTSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKV--VGETLEIVNFLGEKYPRSARILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYIVSRS 174
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.895e-23 Identity = 64/180 (35.56%), Postives = 100/180 (55.56%), Query Frame = 3 Query: 96 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635 E ++IP+GV+V IN + V+GP G+ SR F + N D +T+ E + ++ F +K A I T +H+ N+ITGVT G+ Y M+ V+AHFP+ + N + I NFLGE+ R ++ V+ DE+ + G + E V ++ A + Q +K +D R F DGIY+ K Sbjct: 9 EEIEIPEGVEVIINNNEVTVKGPNGEDSRKFTYPNVD---ITEVENN---VVLETSFPRKKDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV--NKDVVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.307e-22 Identity = 65/182 (35.71%), Postives = 101/182 (55.49%), Query Frame = 3 Query: 93 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638 + T++IP+GV V ++ V +GP+G + R F + + E + +DA ++ A + T SH+ NLI GV++G+ KM VYAHFP+ + K + I NFLGEKK R +L G T ++ +E+V+ G + E V ++AA I QK +K D R F DGIY+ +K+ Sbjct: 6 ARTIEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVREGE------VVVDAESSRKEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKKPRIAKIL-GETKVKVS--GNEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METVS (50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.637e-21 Identity = 62/185 (33.51%), Postives = 101/185 (54.59%), Query Frame = 3 Query: 87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638 L E ++IP V V++N + V+ L R+ + + + K+ +++ F + +A + T SH+ N+I GV++G+ YK+ YAHFP+ + N I+ NFLGEK R +++GVTV KV +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METVA (50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.637e-21 Identity = 62/185 (33.51%), Postives = 101/185 (54.59%), Query Frame = 3 Query: 87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638 L E ++IP V V++N + V+ L R+ + + + K+ +++ F + +A + T SH+ N+I GV++G+ YK+ YAHFP+ + N I+ NFLGEK R +++GVTV KV +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 2.137e-21 Identity = 65/183 (35.52%), Postives = 109/183 (59.56%), Query Frame = 3 Query: 96 ETMDIPDGVKVKI--NAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638 E ++IP+ V +++ N +V+ G GK R + L++ ++ E+ K+ +++ + +K +A I T SH+ N+ITGV++G+ YKM+ YAHFP+ S+ N I+ NFLGEK RK +++GV V S +++++ G D E ++AA I Q V+ +D R F DGIY+ EK+ Sbjct: 9 EEIEIPESVTIEVINNEEVVVKAG--GKELR--RILSYPDVVIKKEDN---KVVVESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKGNEVIID--NFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIYIVEKA 179
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.791e-21 Identity = 65/183 (35.52%), Postives = 100/183 (54.64%), Query Frame = 3 Query: 93 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDML-DGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635 +E + IP+ V V IN + V+G G++ R+F H + DEE + + F ++K A + T SH+ N+I GV G+ YKM+ VYAHFP+ + K + I NFLGE+ RK ++ D V V VK +++ + G + E V ++ A I Q +K +D R F DGIY+ +K Sbjct: 8 TEIIPIPEDVTVTINGSEVTVKGNGGEIKRNFNHNKIT--ISNDEEN----VTVKVAFPNKKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKV--QGKIVTIDNFLGERSPRKAKIIGDDVKV----SVKGEDVTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METBU (50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl6p PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.646e-21 Identity = 62/178 (34.83%), Postives = 96/178 (53.93%), Query Frame = 3 Query: 102 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635 + IP+GV V V+ GP+G +R F ++ + E ++ +D+ +K A + T SH+ N++ GV G+ Y M+ VY+HFP+ + N K I NFLGEKK R ++L +V S DE+++ G + E V ++AA I QK +K D R F DGIY+ +K Sbjct: 9 ISIPEGVTVTFEKNVLSASGPKGTNTR------FLWYPGVNIEVNGSEIIVDSASSRKKQKAMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQIKV--NGKKFVINNFLGEKKPRVSNILGETSVKASG---DEVIVSGINKEDVGQTAANIEQKTKIKRFDPRVFQDGIYIVDK 175 The following BLAST results are available for this feature:
BLAST of CK935790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935790 ID=CK935790; Name=CK935790; organism=Citrus sinensis; type=EST; length=911bpback to top |