CK935790

Overview
NameCK935790
Unique NameCK935790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METTH (50S ribosomal protein L6P OS=Methanobacterium thermoautotrophicum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.025e-23
Identity = 70/184 (38.04%), Postives = 102/184 (55.43%), Query Frame = 3
Query:   87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635
            L  E + IPDGV V I+  V  V+GP+ +LSR F H      +  D      K+ ++  F  +K  A I T  +H+ N+ITGVT+G+RY+M+ VYAHFP++  +  +   IE  NFLGE+  R    +    V    +VK DE+ + G + E V ++ A I Q   +K +D R F DGIY+  K
Sbjct:    6 LIREEIPIPDGVDVTIDGGVT-VKGPKWELSRKFNHSEISMAVEDD------KVVLEVKFPKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVAGDKVVIE--NFLGERHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIYLVSK 176          
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.339e-23
Identity = 68/184 (36.96%), Postives = 99/184 (53.80%), Query Frame = 3
Query:   87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638
            L  E ++IP  V V+IN   + V+    +L RD  +   +        T   K+ I+  F  +  +A + T  SH+ N+I GVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEI------STEDGKVVIECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METHJ (50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.339e-23
Identity = 65/180 (36.11%), Postives = 98/180 (54.44%), Query Frame = 3
Query:  102 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638
            + IP GV V ++  V+ V+GP+G L RD  +   +  +      G   ++       +  ++ + T  SH  N+ TGVTKGY Y M+ VY+HFPI   +    + +EI NFLGEK  R   +L G TV    KV  DE+ + G D E+V  +AA I +   ++++D R F DGIY+  +S
Sbjct:    7 VSIPSGVSVTMDGTVLHVKGPKGNLQRDMWYPGIEITI------GSEDVRFTTESQKKAVTSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKV--VGETLEIVNFLGEKYPRSARILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYIVSRS 174          
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.895e-23
Identity = 64/180 (35.56%), Postives = 100/180 (55.56%), Query Frame = 3
Query:   96 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635
            E ++IP+GV+V IN   + V+GP G+ SR F + N D   +T+ E     + ++  F  +K  A I T  +H+ N+ITGVT G+ Y M+ V+AHFP+   +  N   + I NFLGE+  R   ++    V+      DE+ + G + E V ++ A + Q   +K +D R F DGIY+  K
Sbjct:    9 EEIEIPEGVEVIINNNEVTVKGPNGEDSRKFTYPNVD---ITEVENN---VVLETSFPRKKDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV--NKDVVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177          
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.307e-22
Identity = 65/182 (35.71%), Postives = 101/182 (55.49%), Query Frame = 3
Query:   93 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638
            + T++IP+GV V ++  V   +GP+G + R F +      +   E      + +DA    ++  A + T  SH+ NLI GV++G+  KM  VYAHFP+   +    K + I NFLGEKK R   +L G T ++     +E+V+ G + E V ++AA I QK  +K  D R F DGIY+ +K+
Sbjct:    6 ARTIEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVREGE------VVVDAESSRKEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKKPRIAKIL-GETKVKVS--GNEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176          
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METVS (50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.637e-21
Identity = 62/185 (33.51%), Postives = 101/185 (54.59%), Query Frame = 3
Query:   87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638
            L  E ++IP  V V++N   + V+     L R+      +  +  +      K+ +++ F  +  +A + T  SH+ N+I GV++G+ YK+   YAHFP+  +   N   I+  NFLGEK  R   +++GVTV    KV  +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METVA (50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.637e-21
Identity = 62/185 (33.51%), Postives = 101/185 (54.59%), Query Frame = 3
Query:   87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638
            L  E ++IP  V V++N   + V+     L R+      +  +  +      K+ +++ F  +  +A + T  SH+ N+I GV++G+ YK+   YAHFP+  +   N   I+  NFLGEK  R   +++GVTV    KV  +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.137e-21
Identity = 65/183 (35.52%), Postives = 109/183 (59.56%), Query Frame = 3
Query:   96 ETMDIPDGVKVKI--NAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638
            E ++IP+ V +++  N +V+   G  GK  R  + L++   ++  E+    K+ +++ +  +K +A I T  SH+ N+ITGV++G+ YKM+  YAHFP+  S+  N   I+  NFLGEK  RK  +++GV V  S    +++++ G D E   ++AA I Q   V+ +D R F DGIY+ EK+
Sbjct:    9 EEIEIPESVTIEVINNEEVVVKAG--GKELR--RILSYPDVVIKKEDN---KVVVESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKGNEVIID--NFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIYIVEKA 179          
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.791e-21
Identity = 65/183 (35.52%), Postives = 100/183 (54.64%), Query Frame = 3
Query:   93 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDML-DGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635
            +E + IP+ V V IN   + V+G  G++ R+F H      +  DEE     + +   F ++K  A + T  SH+ N+I GV  G+ YKM+ VYAHFP+   +    K + I NFLGE+  RK  ++ D V V     VK +++ + G + E V ++ A I Q   +K +D R F DGIY+ +K
Sbjct:    8 TEIIPIPEDVTVTINGSEVTVKGNGGEIKRNFNHNKIT--ISNDEEN----VTVKVAFPNKKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKV--QGKIVTIDNFLGERSPRKAKIIGDDVKV----SVKGEDVTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178          
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_METBU (50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.646e-21
Identity = 62/178 (34.83%), Postives = 96/178 (53.93%), Query Frame = 3
Query:  102 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635
            + IP+GV V     V+   GP+G  +R      F ++   + E    ++ +D+    +K  A + T  SH+ N++ GV  G+ Y M+ VY+HFP+   +  N K   I NFLGEKK R  ++L   +V  S    DE+++ G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:    9 ISIPEGVTVTFEKNVLSASGPKGTNTR------FLWYPGVNIEVNGSEIIVDSASSRKKQKAMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQIKV--NGKKFVINNFLGEKKPRVSNILGETSVKASG---DEVIVSGINKEDVGQTAANIEQKTKIKRFDPRVFQDGIYIVDK 175          
The following BLAST results are available for this feature:
BLAST of CK935790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_METTH1.025e-2338.0450S ribosomal protein L6P OS=Methanobacterium ther... [more]
RL6_METM61.339e-2336.9650S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METHJ1.339e-2336.1150S ribosomal protein L6P OS=Methanospirillum hung... [more]
RL6_METS33.895e-2335.5650S ribosomal protein L6P OS=Methanobrevibacter sm... [more]
RL6_METMA4.307e-2235.7150S ribosomal protein L6P OS=Methanosarcina mazei ... [more]
RL6_METVS1.637e-2133.5150S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_METVA1.637e-2133.5150S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_META32.137e-2135.5250S ribosomal protein L6P OS=Methanococcus aeolicu... [more]
RL6_METST2.791e-2135.5250S ribosomal protein L6P OS=Methanosphaera stadtm... [more]
RL6_METBU3.646e-2134.8350S ribosomal protein L6P OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004390_E12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935790 ID=CK935790; Name=CK935790; organism=Citrus sinensis; type=EST; length=911bp
GGGGAGGGTTTTGCGGCAGCTCTAGCTTAAGCGTAGGAGGAGAAGAAGAA
GGAAGATATTACAGAGAGAGGAAAATGAAGACAATTCTCTCTTCAGAGAC
TATGGACATCCCAGATGGGGTGAAAGTCAAGATAAATGCAAAGGTTATTG
AAGTAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTTCAAGCATTTGAAC
TTCGACTTCCATCTCATGACTGACGAGGAAACCGGTAAGCGCAAGCTTAA
GATCGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCCGCCATCAGAACTG
CCCTCAGCCATGTCGGCAATCTCATCACTGGTGTTACCAAGGGCTATCGC
TACAAGATGAGATTTGTGTACGCTCACTTTCCCATCAACGCCTCCATCGG
TAACAATAACAAGGCCATTGAGATCCGTAACTTTCTTGGAGAGAAAAAGG
TTCGAAAAGTGGATATGCTTGATGGTGTTACCGTCATTAGGTCCGATAAG
GTTAAGGATGAACTCGTTCTTGATGGAAATGACATTGAACTCGTGTCTCG
CTCTGCTGCTCTAATCAATCAGAAATGCCATGTGAAGAACAAGGACATTA
GGAAATTTCTTGATGGGATCTATGTCAGTGAGAAAAGCACCATACTTGGA
GAAGAATGATGATTAGCTTTCGAATTTTCTTGTCATAGTAATGTTATGAA
TTTTTTTTTAAATCTTTTTAATTTTGCCTCTTACTTTGAGTTGAGGACAT
GCTTTTGGTTGTATTTGGGATTTGGGACTTGGGAGTTCTAGATTTCAATT
TTATGTCTTCAATTGCTATCATCACAATATATGTATGGATTTTATAGCTA
TGCATCTGGCATTTTTGATCTTTTATCTACCTCTTGAATAATCTTCTAAT
CAAACTTCTTG
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