CK935790
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_THEAC (50S ribosomal protein L6P OS=Thermoplasma acidophilum GN=rpl6p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.305e-14 Identity = 54/182 (29.67%), Postives = 92/182 (50.55%), Query Frame = 3 Query: 93 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635 + ++ IPDG KV I+ + + +S++F N L+ D T +KI+A + + T S + N+I G+ G++Y+M+ Y+HFP+ S+ K + I NF GE+ R +++ TV ++ D+V + G + V +AA I + +K D R F DGIY+ K Sbjct: 7 ARSIKIPDGFKVSISGTTVTISYGGKTISKNFA--NNYVKLVEDGST----IKINASKNNSMVRGIVGTWASEINNMIKGLKDGFQYEMKIDYSHFPMRVSV--KGKTVVIENFFGERSPRTAEIVGDTTVTVKGDRV----YIAGISKKDVGETAANIERSTIIKGFDPRVFQDGIYLISK 176
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_PICTO (50S ribosomal protein L6P OS=Picrophilus torridus GN=rpl6p PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.638e-14 Identity = 53/174 (30.46%), Postives = 89/174 (51.15%), Query Frame = 3 Query: 108 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 626 +PD V+ + ++++G G+ SR F+ D ++ E +KI ++ T + T S LI GVTKG+ Y M+ + HFP+ S+ + +E NFLGEK R ++DG V VK D + ++G D + +AA I + ++++ D R F DGI++ Sbjct: 12 LPDDVQATMENNELKIKGKLGEASRIFR----DNYVKAYIEGSS--VKIATSKNNKYTKGIVGTWYSETKLLIEGVTKGFEYHMKIDFTHFPMRVSVRGDKLIVE--NFLGEKSPRSAKIVDGCKV----SVKGDRITINGIDKRKIGETAANIERATYIRHFDARVFQDGIFL 173
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_THEVO (50S ribosomal protein L6P OS=Thermoplasma volcanium GN=rpl6p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 8.141e-13 Identity = 53/182 (29.12%), Postives = 91/182 (50.00%), Query Frame = 3 Query: 93 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635 + ++IP VKV ++ ++ + KL + F N+ L+ D K+KI + + + T S + N++ G+ +G++Y+M+ Y+HFP+ S+ K + I NF GE+ R +++ V VK D L L+G + V +AA I + +K D R F DGIY+ K Sbjct: 7 ASVIEIPKDVKVGLSGTMLSMTFGNKKLEKKFAD-NYVRLLVEDN-----KIKIVKSKNNSRERGIVGTWASEISNMVKGLKEGFQYEMKIDYSHFPMRVSV--KGKTVVIENFFGERSPRTAEIVGETQV----SVKGDRLFLNGPSKKDVGETAANIERATIIKGFDPRVFQDGIYLISK 176 The following BLAST results are available for this feature:
BLAST of CK935790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935790 ID=CK935790; Name=CK935790; organism=Citrus sinensis; type=EST; length=911bpback to top |