CK935790

Overview
NameCK935790
Unique NameCK935790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_THEAC (50S ribosomal protein L6P OS=Thermoplasma acidophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.305e-14
Identity = 54/182 (29.67%), Postives = 92/182 (50.55%), Query Frame = 3
Query:   93 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635
            + ++ IPDG KV I+   + +      +S++F   N    L+ D  T    +KI+A   +      + T  S + N+I G+  G++Y+M+  Y+HFP+  S+    K + I NF GE+  R  +++   TV ++ D+V     + G   + V  +AA I +   +K  D R F DGIY+  K
Sbjct:    7 ARSIKIPDGFKVSISGTTVTISYGGKTISKNFA--NNYVKLVEDGST----IKINASKNNSMVRGIVGTWASEINNMIKGLKDGFQYEMKIDYSHFPMRVSV--KGKTVVIENFFGERSPRTAEIVGDTTVTVKGDRV----YIAGISKKDVGETAANIERSTIIKGFDPRVFQDGIYLISK 176          
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_PICTO (50S ribosomal protein L6P OS=Picrophilus torridus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.638e-14
Identity = 53/174 (30.46%), Postives = 89/174 (51.15%), Query Frame = 3
Query:  108 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 626
            +PD V+  +    ++++G  G+ SR F+    D ++    E     +KI     ++ T   + T  S    LI GVTKG+ Y M+  + HFP+  S+  +   +E  NFLGEK  R   ++DG  V     VK D + ++G D   +  +AA I +  ++++ D R F DGI++
Sbjct:   12 LPDDVQATMENNELKIKGKLGEASRIFR----DNYVKAYIEGSS--VKIATSKNNKYTKGIVGTWYSETKLLIEGVTKGFEYHMKIDFTHFPMRVSVRGDKLIVE--NFLGEKSPRSAKIVDGCKV----SVKGDRITINGIDKRKIGETAANIERATYIRHFDARVFQDGIFL 173          
BLAST of CK935790 vs. ExPASy Swiss-Prot
Match: RL6_THEVO (50S ribosomal protein L6P OS=Thermoplasma volcanium GN=rpl6p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.141e-13
Identity = 53/182 (29.12%), Postives = 91/182 (50.00%), Query Frame = 3
Query:   93 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNFDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635
            +  ++IP  VKV ++  ++ +     KL + F   N+   L+ D      K+KI     + +    + T  S + N++ G+ +G++Y+M+  Y+HFP+  S+    K + I NF GE+  R  +++    V     VK D L L+G   + V  +AA I +   +K  D R F DGIY+  K
Sbjct:    7 ASVIEIPKDVKVGLSGTMLSMTFGNKKLEKKFAD-NYVRLLVEDN-----KIKIVKSKNNSRERGIVGTWASEISNMVKGLKEGFQYEMKIDYSHFPMRVSV--KGKTVVIENFFGERSPRTAEIVGETQV----SVKGDRLFLNGPSKKDVGETAANIERATIIKGFDPRVFQDGIYLISK 176          
The following BLAST results are available for this feature:
BLAST of CK935790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_THEAC3.305e-1429.6750S ribosomal protein L6P OS=Thermoplasma acidophi... [more]
RL6_PICTO5.638e-1430.4650S ribosomal protein L6P OS=Picrophilus torridus ... [more]
RL6_THEVO8.141e-1329.1250S ribosomal protein L6P OS=Thermoplasma volcaniu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004390_E12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935790 ID=CK935790; Name=CK935790; organism=Citrus sinensis; type=EST; length=911bp
GGGGAGGGTTTTGCGGCAGCTCTAGCTTAAGCGTAGGAGGAGAAGAAGAA
GGAAGATATTACAGAGAGAGGAAAATGAAGACAATTCTCTCTTCAGAGAC
TATGGACATCCCAGATGGGGTGAAAGTCAAGATAAATGCAAAGGTTATTG
AAGTAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTTCAAGCATTTGAAC
TTCGACTTCCATCTCATGACTGACGAGGAAACCGGTAAGCGCAAGCTTAA
GATCGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCCGCCATCAGAACTG
CCCTCAGCCATGTCGGCAATCTCATCACTGGTGTTACCAAGGGCTATCGC
TACAAGATGAGATTTGTGTACGCTCACTTTCCCATCAACGCCTCCATCGG
TAACAATAACAAGGCCATTGAGATCCGTAACTTTCTTGGAGAGAAAAAGG
TTCGAAAAGTGGATATGCTTGATGGTGTTACCGTCATTAGGTCCGATAAG
GTTAAGGATGAACTCGTTCTTGATGGAAATGACATTGAACTCGTGTCTCG
CTCTGCTGCTCTAATCAATCAGAAATGCCATGTGAAGAACAAGGACATTA
GGAAATTTCTTGATGGGATCTATGTCAGTGAGAAAAGCACCATACTTGGA
GAAGAATGATGATTAGCTTTCGAATTTTCTTGTCATAGTAATGTTATGAA
TTTTTTTTTAAATCTTTTTAATTTTGCCTCTTACTTTGAGTTGAGGACAT
GCTTTTGGTTGTATTTGGGATTTGGGACTTGGGAGTTCTAGATTTCAATT
TTATGTCTTCAATTGCTATCATCACAATATATGTATGGATTTTATAGCTA
TGCATCTGGCATTTTTGATCTTTTATCTACCTCTTGAATAATCTTCTAAT
CAAACTTCTTG
back to top