CK935792

Overview
NameCK935792
Unique NameCK935792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935792 vs. ExPASy Swiss-Prot
Match: Y556_SYNY3 (UPF0001 protein slr0556 OS=Synechocystis sp. (strain PCC 6803) GN=slr0556 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.679e-23
Identity = 77/208 (37.02%), Postives = 113/208 (54.33%), Query Frame = 2
Query:  218 IRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP--EDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPEN---FRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 826
            +R+VAV+KTK ++ I   Y AG R F E+ +QE + K   L   +DI WHF+G LQSNKA+ +   V N   +  V N  IA  LD+    L + P + L+Q+    +E+KSG         +  + L   NL+  GLMTI +P   S  +    F  L N    + +   ++    ELSMGMSGD+ +AI  G+T +R+G+ +FG R
Sbjct:   18 VRLVAVTKTKAIADIEAAYGAGIRDFAESRIQEALPKIEALANYQDINWHFIGRLQSNKARKV---VENFTYIHSVDNLAIAVKLDRIAEELNKFP-QGLLQIKLLPDENKSGWTREELKLDLPQLEL-LKNLKICGLMTI-LPLGLSPGDRQLTFGELKNLATAINQQSSLS--LTELSMGMSGDYPEAIAAGATMIRLGTILFGDR 217          
BLAST of CK935792 vs. ExPASy Swiss-Prot
Match: Y531_BUCAP (UPF0001 protein BUsg_531 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_531 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.409e-19
Identity = 71/227 (31.28%), Postives = 118/227 (51.98%), Query Frame = 2
Query:  155 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP--EDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPD----YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 817
            ++ +  +++   +++    ++I+++AVSK + +  I+    +G   FGENYVQE +DK  +L   ++I WHF+G +QSNK K +     N D  + +  EKIA  L+K        P+ VL+Q+N S E +K+GI   +   + + + L  PNL F G+M   MP+         +N++       E+ K     +    LS+G S D E A+   S  +RIG  IF
Sbjct:    8 IKIIKKKIQYFLKKNNYPLKKIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQEGIDKIQKLKKYQNIIWHFIGKVQSNKTKII---AENFDWCQTIDREKIAILLNK-YREKKSFPMNVLMQINISNEVTKNGICIKNYKKLAKTISL-MPNLNFRGIMM--MPEVEKKMIKQNDNYKNGNFIFNELKKEYQSID---TLSLGTSFDIENALLFHSNMIRIGRFIF 224          
BLAST of CK935792 vs. ExPASy Swiss-Prot
Match: Y919_MYCLE (UPF0001 protein ML0919 OS=Mycobacterium leprae GN=ML0919 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.139e-19
Identity = 77/248 (31.05%), Postives = 124/248 (50.00%), Query Frame = 2
Query:  134 EGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPE----------DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNL---GRK--PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP---NLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGP 823
            E   + AL +V  R+  A++ +GR   +I ++ +SK  P + +  +   G RS GE+  QE   KA +  E           I WH VG +Q NK ++L         ++ +   ++   LD+AV+     GR+  PL+V VQ++  G+ S+ G++ ++  G V+ V  +     +LE  GLM  G+P     P+  +     R E  + L    D   LS GMS DFE A++ GST VR+G+ + GP
Sbjct:   12 ESELMHALATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAILSRLGCRSVGESRAQEASTKAAEFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTAHSIDSL---QLVAALDRAVAAALAGGRREQPLQVYVQISLDGDISRGGVNVTAP-GAVDRVCAQVEESKSLELVGLM--GIPPLGWNPD--QAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKHGSTCVRVGTALLGP 251          
BLAST of CK935792 vs. ExPASy Swiss-Prot
Match: Y1368_DEIRA (UPF0001 protein DR_1368 OS=Deinococcus radiodurans GN=DR_1368 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.470e-18
Identity = 75/220 (34.09%), Postives = 108/220 (49.09%), Query Frame = 2
Query:  161 SVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIR-QVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 817
            +VL  +R+A  ++GR    +R+VAV+K   +  IR QV   G     EN  QE+ DK   LP   +WHF+G LQ NK K L G    + +V  +     A  +  A +  G+ P  +L + N  GE  K G+ P     ++  VR     LE  GLM   M  Y       +   +  A   + LG+ E    LSMGMSGD+  A+  G+T VR+G ++F
Sbjct:    5 AVLAGIREAEAQAGRAAGTVRLVAVTKGHSLDEIRGQVLAHGDFPLAENRGQELRDKVAGLP-GAEWHFIGPLQRNKIKYLRG----VTLVHSIEEPWQAQAIADAAAEWGQAPAVLLQRHN--GEGQKHGVLPDDLPAVLREVR--ATGLEVRGLMA--MAPYDDEARAAQVFADT-ARQAQDLGLVE----LSMGMSGDYPLAVAAGATLVRVGRSLF 208          
BLAST of CK935792 vs. ExPASy Swiss-Prot
Match: Y2172_MYCBO (UPF0001 protein Mb2172c OS=Mycobacterium bovis GN=Mb2172c PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.919e-18
Identity = 77/255 (30.20%), Postives = 121/255 (47.45%), Query Frame = 2
Query:  119 AAPTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPE-----------DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAV-----SNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN---LEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 826
            A P  E     AL ++  R+  AAE +GR   +I ++ ++K  P + +  ++  G RS GE+  QE   K  +L              + WH VG +Q NKA +L         V+   + ++   LD+AV      +   + L+V VQV+  G+ S+ G+D S+  G V+ +  +      LE  GLM  G+P     P+     L  ++E  +   M      LS GMS D E A++ GST VR+G+ + GPR
Sbjct:    7 AYPDRESELTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEASAKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVD---SSRLVTALDRAVVAALAEHRRGERLRVYVQVSLDGDGSRGGVD-STTPGAVDRICAQVQESEGLELVGLM--GIPPLDWDPDEAFDRL--QSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253          
BLAST of CK935792 vs. ExPASy Swiss-Prot
Match: Y2148_MYCTU (UPF0001 protein Rv2148c/MT2207 OS=Mycobacterium tuberculosis GN=Rv2148c PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.919e-18
Identity = 77/255 (30.20%), Postives = 121/255 (47.45%), Query Frame = 2
Query:  119 AAPTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPE-----------DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAV-----SNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN---LEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 826
            A P  E     AL ++  R+  AAE +GR   +I ++ ++K  P + +  ++  G RS GE+  QE   K  +L              + WH VG +Q NKA +L         V+   + ++   LD+AV      +   + L+V VQV+  G+ S+ G+D S+  G V+ +  +      LE  GLM  G+P     P+     L  ++E  +   M      LS GMS D E A++ GST VR+G+ + GPR
Sbjct:    7 AYPDRESELTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEASAKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVD---SSRLVTALDRAVVAALAEHRRGERLRVYVQVSLDGDGSRGGVD-STTPGAVDRICAQVQESEGLELVGLM--GIPPLDWDPDEAFDRL--QSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253          
BLAST of CK935792 vs. ExPASy Swiss-Prot
Match: Y549_BUCAI (UPF0001 protein BU549 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU549 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.782e-14
Identity = 66/211 (31.28%), Postives = 104/211 (49.29%), Query Frame = 2
Query:  212 EQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP--EDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDK-AVSNLGRKPLKVLVQVNTSGE-ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI-----GMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 817
            ++I ++AVSK + ++ I +   +G  +FGENY+QE + K   L   ++I WHF+G +QSNK K +     N    + V  EKIA  L+K    NL   P+ VL+Q+N   E ++   ID    L     + L  PNL   G+M +      + +     E  +T+ N       ++        LS+G S D ++++   S  VRIG  IF
Sbjct:    2 KKITIIAVSKNRNINNIEEAIRSGINNFGENYLQESLIKIENLKKYKNITWHFIGKIQSNKTKKI---AQNFSWCQTVDREKIAVLLNKFRPKNL--PPINVLIQINNLKELQNNRYIDQYQELA---QLILSMPNLNLRGIMAVPSIKTNVIENNLQYEKIKTIFNRFKRQYSSVD------TLSLGTSVDIKESLLATSNMVRIGRNIF 198          
BLAST of CK935792 vs. ExPASy Swiss-Prot
Match: Y2153_CORGL (UPF0001 protein Cgl2153/cg2364 OS=Corynebacterium glutamicum GN=Cgl2153 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.970e-14
Identity = 69/228 (30.26%), Postives = 106/228 (46.49%), Query Frame = 2
Query:  173 RVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVS------NLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQC-ELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 835
            R+        R +  +R++ V+K  PV  I+ + + G  + GEN  QE   KA +LP D+ +H +G +QS KA ++         V  V +EKIA  L + V+      +     L   +Q++  G+ S+ G   S    + + +     +L F GLM +  P     PE      +   +V   L    D+  E S GMSGD   AI+ GST VR+G+ I G R  A
Sbjct:    4 RIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGENREQEARAKALELP-DMDFHMIGQIQSKKANSIARWAA---AVHSVDSEKIAEALGRGVALALDRGDRTSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCIS-DTTHLRFEGLMCV--PPLGWGPEK---AFSQARDVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRPLA 221          
BLAST of CK935792 vs. ExPASy Swiss-Prot
Match: Y497_BUCBP (UPF0001 protein bbp_497 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=bbp_497 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.361e-13
Identity = 63/224 (28.12%), Postives = 111/224 (49.55%), Query Frame = 2
Query:  155 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTST-PENFRT--LLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 817
            ++ +  ++   +++     ++I+++AVSK + V+ I++    G  SFGENYVQE   K  +L  +I+WH++G +QSNKA  +     N      + N+K A  L+K         L  L+Q+N          D  +   + + +     NL   G+M   MP + +T  E  ++   ++   ++ K      D   +S+G S D + A+  GST +RIGS+IF
Sbjct:    8 IKKLKQKITNISKKFKINTQKIKLLAVSKNRSVNDIKKAILCGQNSFGENYVQESQPKI-KLFNNIEWHYIGQIQSNKAHII---AKNFSWCHTITNKKTAVLLNK-YRPYSLPKLNTLIQINIRDNTINIDDDIETIKQLAKTIN-SLDNLNLRGIM--AMPYFKNTYLEQIQSYKYIHLYFDILKKKYTYID--TVSLGTSHDIQAALYSGSTLLRIGSSIF 221          
The following BLAST results are available for this feature:
BLAST of CK935792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
Y556_SYNY34.679e-2337.02UPF0001 protein slr0556 OS=Synechocystis sp. (stra... [more]
Y531_BUCAP1.409e-1931.28UPF0001 protein BUsg_531 OS=Buchnera aphidicola su... [more]
Y919_MYCLE3.139e-1931.05UPF0001 protein ML0919 OS=Mycobacterium leprae GN=... [more]
Y1368_DEIRA3.470e-1834.09UPF0001 protein DR_1368 OS=Deinococcus radiodurans... [more]
Y2172_MYCBO5.919e-1830.20UPF0001 protein Mb2172c OS=Mycobacterium bovis GN=... [more]
Y2148_MYCTU5.919e-1830.20UPF0001 protein Rv2148c/MT2207 OS=Mycobacterium tu... [more]
Y549_BUCAI1.782e-1431.28UPF0001 protein BU549 OS=Buchnera aphidicola subsp... [more]
Y2153_CORGL3.970e-1430.26UPF0001 protein Cgl2153/cg2364 OS=Corynebacterium ... [more]
Y497_BUCBP3.361e-1328.13UPF0001 protein bbp_497 OS=Buchnera aphidicola sub... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004390_F02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935792 ID=CK935792; Name=CK935792; organism=Citrus sinensis; type=EST; length=867bp
GGGGATGATGATAAATTGAATAAAAATTGTTCTTATCCACGAAAATCGAA
AACAAGAAGAAAAAGGAAAAGAACAAGTGAAAAGGCTCAAAACACGTACA
CAAAAAGAAAGCAGAATGGCAGCTCCAACAGTCGAGGGAGCAGCTGTGAC
AGCGCTTCGCTCGGTGCTGCACCGGGTCCGACAGGCGGCGGAGCGGTCGG
GTCGGACTCAGGAACAGATACGGGTCGTGGCTGTATCGAAGACAAAACCG
GTTTCCCTGATTCGGCAAGTGTATGATGCTGGTCACCGTAGCTTTGGTGA
AAATTACGTACAAGAAATCGTTGATAAAGCTCCTCAGCTGCCAGAGGACA
TAAAGTGGCATTTTGTAGGGCATTTGCAGAGCAACAAAGCTAAAACTCTT
CTGGGTGGAGTGCCAAATCTGGACATGGTTGAGGGTGTTGGTAATGAGAA
GATTGCAAATCATCTTGACAAAGCTGTTTCAAACCTCGGAAGAAAGCCTT
TGAAGGTTTTGGTCCAAGTGAATACCAGTGGAGAAGAATCAAAATCAGGA
ATTGATCCTTCAAGTTGTCTAGGAATTGTGGAACATGTTAGACTGCGATG
CCCAAATTTGGAGTTTTCGGGCTTAATGACAATAGGGATGCCAGATTATA
CTTCAACTCCAGAGAACTTCAGGACTTTGTTGAATTGTAGAGCTGAGGTT
TGCAAGGCACTTGGAATGGCAGAGGATCAGTGTGAGCTATCGATGGGCAT
GTCTGGTGACTTTGAGCAAGCAATTGAAATGGGTAGTACCAGTGTGAGAA
TCGGATCAACGATATTTGGACCTAGGGAATATGCAAAGAAGCAGCAAAAT
TAATATCAGCTGTGCTG
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