CK935798

Overview
NameCK935798
Unique NameCK935798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_VIBPA (L-threonine 3-dehydrogenase OS=Vibrio parahaemolyticus GN=tdh PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.883e-30
Identity = 74/209 (35.41%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L+++K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G+ A  +V PA   FK+PD +S +  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V    L+D+  E+
Sbjct:   23 PEVGHNDILIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNR-EGAFAEYLVIPAFNAFKIPDEISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGVTRAVNVAEEKLEDVMAEL 229          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SHEB9 (L-threonine 3-dehydrogenase OS=Shewanella baltica (strain OS195) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.883e-30
Identity = 74/209 (35.41%), Postives = 118/209 (56.46%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L+++K   ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            GS A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V   +L+D+ +E+
Sbjct:   21 PVMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKMGATRAVNVSKESLKDVMKEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SHEB5 (L-threonine 3-dehydrogenase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.883e-30
Identity = 74/209 (35.41%), Postives = 118/209 (56.46%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L+++K   ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            GS A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V   +L+D+ +E+
Sbjct:   21 PVMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKMGATRAVNVSKESLKDVMKEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SHEB2 (L-threonine 3-dehydrogenase OS=Shewanella baltica (strain OS223) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.883e-30
Identity = 74/209 (35.41%), Postives = 118/209 (56.46%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L+++K   ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            GS A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V   +L+D+ +E+
Sbjct:   21 PVMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKMGATRAVNVSKESLKDVMKEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_MARMS (L-threonine 3-dehydrogenase OS=Marinomonas sp. (strain MWYL1) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.883e-30
Identity = 77/209 (36.84%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P  G  DV++++    ICG+D+H  +    A   +  PM +GHE  GVI +VG EV     GDRV+ E  I+C  C +C+ GR +LC +          G+ A  +V PA   FK+P+N+S +  A+ +P     H     ++  E +VLI GAGPIG +    A+  GA  +VI DV+D+RL +AK++GA   V V   +L+D+  E+
Sbjct:   21 PDCGHNDVVIKISKTAICGTDMHIYQWDDWAQNTIPVPMTVGHEFVGVITEVGPEVSGFKIGDRVSGEGHITCGHCRNCRAGRRHLCRKTLGVGVNRT-GAFAEYLVIPASNAFKIPNNISDDMAAIFDPFGNATHTALSFDLIGE-DVLITGAGPIGAMAAAIAKHVGARNVVITDVNDFRLDLAKKMGATRTVNVSRESLKDVMTEI 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_VIBFM (L-threonine 3-dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=tdh PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.071e-30
Identity = 74/211 (35.07%), Postives = 116/211 (54.98%), Query Frame = 1
Query:  199 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVFT-NLQDIAEEV 828
            E P +G  D+L+R+K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G+ +  +V PA   FK+P  +S +  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA  +VI DV++YRL +AK++G    V V    L+D+  ++
Sbjct:   21 EKPEMGHNDLLIRIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRT-GAFSEYLVIPAFNAFKIPAGISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLDLAKKMGVTRAVNVMNEKLEDVMSDL 229          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SHESW (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=tdh PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.071e-30
Identity = 74/209 (35.41%), Postives = 118/209 (56.46%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L+++K   ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            GS A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V   +L+D+ +E+
Sbjct:   21 PVMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFNIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKMGATRAVNVSKESLKDVMKEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_LEGPA (L-threonine 3-dehydrogenase OS=Legionella pneumophila (strain Paris) GN=tdh PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.071e-30
Identity = 77/220 (35.00%), Postives = 118/220 (53.64%), Query Frame = 1
Query:  187 IQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKV-FTNLQDIAEEVXKIQ 840
            +Q   +P  G  DVL+++K   ICG+D+H       A   +  PM +GHE  G I +VG EV+ L  G RV+ E  I+C  C +C+ G+ +LC   +      P  G  A  +  PA     LPDN++ E+ A+ +P     H     ++  E +VLI GAGPIG++     R  GA  +VI DV+D+RL +A+++G    V V +  L D+A E+  ++
Sbjct:   15 MQDIPVPEYGVNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGKEVQGLKVGQRVSGEGHITCGFCRNCRAGKRHLCRNTLGVGVNRP--GCFAEYLALPATNVIALPDNITEEQAAILDPFGNAAHCALAFDVVGE-DVLITGAGPIGIMAAAIVRHIGARHVVITDVNDHRLELARQMGVSRAVNVKYQKLIDVANELGMLE 231          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SALTI (L-threonine 3-dehydrogenase OS=Salmonella typhi GN=tdh PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.624e-30
Identity = 74/209 (35.41%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V   +L D+  E+
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SHIDS (L-threonine 3-dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tdh PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.651e-30
Identity = 77/213 (36.15%), Postives = 120/213 (56.34%), Query Frame = 1
Query:  202 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG---ADNIVKVFTNLQDIAEEV 828
            +P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+P N+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G   A N+ K   NL D+  E+
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPGNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAANVAK--ENLNDVMAEL 227          
The following BLAST results are available for this feature:
BLAST of CK935798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
TDH_VIBPA3.883e-3035.41L-threonine 3-dehydrogenase OS=Vibrio parahaemolyt... [more]
TDH_SHEB93.883e-3035.41L-threonine 3-dehydrogenase OS=Shewanella baltica ... [more]
TDH_SHEB53.883e-3035.41L-threonine 3-dehydrogenase OS=Shewanella baltica ... [more]
TDH_SHEB23.883e-3035.41L-threonine 3-dehydrogenase OS=Shewanella baltica ... [more]
TDH_MARMS3.883e-3036.84L-threonine 3-dehydrogenase OS=Marinomonas sp. (st... [more]
TDH_VIBFM5.071e-3035.07L-threonine 3-dehydrogenase OS=Vibrio fischeri (st... [more]
TDH_SHESW5.071e-3035.41L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_LEGPA5.071e-3035.00L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]
TDH_SALTI6.624e-3035.41L-threonine 3-dehydrogenase OS=Salmonella typhi GN... [more]
TDH_SHIDS8.651e-3036.15L-threonine 3-dehydrogenase OS=Shigella dysenteria... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004390_E03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935798 ID=CK935798; Name=CK935798; organism=Citrus sinensis; type=EST; length=857bp
GGGGATCCAGAATCAGAATAAATGGTAGCTTAAAATGTTGTGTACAGAGT
GAAGTCTCTTCTGTGCACTTGTGTTTTTGAAGGGTAAAAAGCAAATATGG
GCAAAGGAGGGATGTCACAAGGAGAAAAGAAGGATGGAGAAGAAGTTAAC
ATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAACCTTTTGA
GCTTCCTTCTCTGGGACCATATGATGTTTTAGTCAGGATGAAAGCCGTTG
GTATTTGTGGAAGTGATGTGCATTATCTCAAGACCTTGAGGTGTGCCGAT
TTTGTTGTGAAAGAGCCTATGGTGATTGGGCACGAGTGTGCTGGGGTCAT
AGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGG
CCCTGGAACCCGGGATCAGCTGCTGGCGATGCGATCACTGCAAAGGAGGT
CGATACAATTTGTGTCCAGAGATGAAATTTTTTGCAACTCCGCCCGTTCA
TGGTTCCCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGC
TGCCGGACAATGTGAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGT
GTTGGTCTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGT
GCTTATCATGGGAGCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTC
GTGCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGT
TTATCTGTTGCAAAGGAACTTGGTGCAGATAATATTGTTAAAGTTTTCAC
AAATTTGCAGGACATAGCTGAAGAAGTNNNNAAGATACAGAAAGCCATGG
GGANNNN
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