CK935798

Overview
NameCK935798
Unique NameCK935798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_EDWI9 (L-threonine 3-dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=tdh PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.651e-30
Identity = 75/217 (34.56%), Postives = 117/217 (53.92%), Query Frame = 1
Query:  202 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVFTNLQDIAEEVXKIQKAMG 852
            LP+LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  VG EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +V PA   FK+PDN+     A+ +P    +H     ++  E +VL+ GAGPIG++     R  GA  +VI DV+DYRL +A+++G    V V        E + ++ +A+G
Sbjct:   20 LPALGHNDIMIKIRKAAICGTDVHIYNWDTWSQKTIPVPMVVGHEYVGEVVAVGQEVRGFRIGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNR-QGAFAEYLVIPAFNAFKIPDNIPDALAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCRHVGARHVVITDVNDYRLDLARKMGVTRAVNV------SRESLPEVMQALG 228          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_CITK8 (L-threonine 3-dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=tdh PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.651e-30
Identity = 75/207 (36.23%), Postives = 118/207 (57.00%), Query Frame = 1
Query:  202 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDI 816
            +P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G  + V V   NL D+
Sbjct:   20 VPEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFRIGDRVSGEGHITCGHCRNCRGGRTHLCRNTLGVGVNRP--GCFAEYLVLPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGIIHTVNVAKENLTDV 223          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SHEWM (L-threonine 3-dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=tdh PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.130e-29
Identity = 73/209 (34.93%), Postives = 117/209 (55.98%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V   +L+D+  E+
Sbjct:   21 PEMGHNDLLIKIRKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVDIGQEVRGFSIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-DGAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELAQKMGATRAVNVAKEDLKDVMSEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SALTY (L-threonine 3-dehydrogenase OS=Salmonella typhimurium GN=tdh PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.130e-29
Identity = 74/209 (35.41%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V   +L D+  E+
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SALSV (L-threonine 3-dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=tdh PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.130e-29
Identity = 74/209 (35.41%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V   +L D+  E+
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SALPK (L-threonine 3-dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=tdh PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.130e-29
Identity = 74/209 (35.41%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V   +L D+  E+
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SALPC (L-threonine 3-dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=tdh PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.130e-29
Identity = 74/209 (35.41%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V   +L D+  E+
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SALPB (L-threonine 3-dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tdh PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.130e-29
Identity = 74/209 (35.41%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V   +L D+  E+
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SALPA (L-threonine 3-dehydrogenase OS=Salmonella paratyphi A GN=tdh PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.130e-29
Identity = 74/209 (35.41%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V   +L D+  E+
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SALNS (L-threonine 3-dehydrogenase OS=Salmonella newport (strain SL254) GN=tdh PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.130e-29
Identity = 74/209 (35.41%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V   +L D+  E+
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL 227          
The following BLAST results are available for this feature:
BLAST of CK935798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
TDH_EDWI98.651e-3034.56L-threonine 3-dehydrogenase OS=Edwardsiella ictalu... [more]
TDH_CITK88.651e-3036.23L-threonine 3-dehydrogenase OS=Citrobacter koseri ... [more]
TDH_SHEWM1.130e-2934.93L-threonine 3-dehydrogenase OS=Shewanella woodyi (... [more]
TDH_SALTY1.130e-2935.41L-threonine 3-dehydrogenase OS=Salmonella typhimur... [more]
TDH_SALSV1.130e-2935.41L-threonine 3-dehydrogenase OS=Salmonella schwarze... [more]
TDH_SALPK1.130e-2935.41L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALPC1.130e-2935.41L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALPB1.130e-2935.41L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALPA1.130e-2935.41L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALNS1.130e-2935.41L-threonine 3-dehydrogenase OS=Salmonella newport ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004390_E03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935798 ID=CK935798; Name=CK935798; organism=Citrus sinensis; type=EST; length=857bp
GGGGATCCAGAATCAGAATAAATGGTAGCTTAAAATGTTGTGTACAGAGT
GAAGTCTCTTCTGTGCACTTGTGTTTTTGAAGGGTAAAAAGCAAATATGG
GCAAAGGAGGGATGTCACAAGGAGAAAAGAAGGATGGAGAAGAAGTTAAC
ATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAACCTTTTGA
GCTTCCTTCTCTGGGACCATATGATGTTTTAGTCAGGATGAAAGCCGTTG
GTATTTGTGGAAGTGATGTGCATTATCTCAAGACCTTGAGGTGTGCCGAT
TTTGTTGTGAAAGAGCCTATGGTGATTGGGCACGAGTGTGCTGGGGTCAT
AGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGG
CCCTGGAACCCGGGATCAGCTGCTGGCGATGCGATCACTGCAAAGGAGGT
CGATACAATTTGTGTCCAGAGATGAAATTTTTTGCAACTCCGCCCGTTCA
TGGTTCCCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGC
TGCCGGACAATGTGAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGT
GTTGGTCTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGT
GCTTATCATGGGAGCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTC
GTGCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGT
TTATCTGTTGCAAAGGAACTTGGTGCAGATAATATTGTTAAAGTTTTCAC
AAATTTGCAGGACATAGCTGAAGAAGTNNNNAAGATACAGAAAGCCATGG
GGANNNN
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