CK935798

Overview
NameCK935798
Unique NameCK935798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_YERPS (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis GN=tdh PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.207e-31
Identity = 77/209 (36.84%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GAGPIG++     +  GA  +VI DV++YRL +A+++G    V V   NL D+  E+
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVITDVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_YERPP (L-threonine 3-dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=tdh PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.207e-31
Identity = 77/209 (36.84%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GAGPIG++     +  GA  +VI DV++YRL +A+++G    V V   NL D+  E+
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVIADVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_YERPN (L-threonine 3-dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tdh PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.207e-31
Identity = 77/209 (36.84%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GAGPIG++     +  GA  +VI DV++YRL +A+++G    V V   NL D+  E+
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVIADVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_YERPG (L-threonine 3-dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=tdh PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.207e-31
Identity = 77/209 (36.84%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GAGPIG++     +  GA  +VI DV++YRL +A+++G    V V   NL D+  E+
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVIADVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_YERPE (L-threonine 3-dehydrogenase OS=Yersinia pestis GN=tdh PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.207e-31
Identity = 77/209 (36.84%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GAGPIG++     +  GA  +VI DV++YRL +A+++G    V V   NL D+  E+
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVIADVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_YERPB (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=tdh PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.207e-31
Identity = 77/209 (36.84%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GAGPIG++     +  GA  +VI DV++YRL +A+++G    V V   NL D+  E+
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVITDVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_YERPA (L-threonine 3-dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=tdh PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.207e-31
Identity = 77/209 (36.84%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GAGPIG++     +  GA  +VI DV++YRL +A+++G    V V   NL D+  E+
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVIADVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_YERP3 (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tdh PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.207e-31
Identity = 77/209 (36.84%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GAGPIG++     +  GA  +VI DV++YRL +A+++G    V V   NL D+  E+
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVITDVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_YERE8 (L-threonine 3-dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tdh PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.577e-31
Identity = 77/209 (36.84%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKV-FTNLQDIAEEV 828
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GAGPIG++     +  GA  +VI DV++YRL +A+++G    V V   NL D+  E+
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVITDVNEYRLDLARKMGVTRAVNVNKENLNDVMAEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_FRAP2 (L-threonine 3-dehydrogenase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tdh PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.577e-31
Identity = 78/219 (35.62%), Postives = 124/219 (56.62%), Query Frame = 1
Query:  202 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKV--FTNLQDIAEEVXKIQKAMG 852
            +P  G  DVL+++K   ICG+D+H     + +   +  PM+ GHE AG +   G+ V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI GAGPIGL+ +  AR  GA RIVI D++ YRL +A++ GA   V V  F N Q +  ++ K+   +G
Sbjct:   21 MPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQATIPVPMITGHEFAGEVVAKGNGVTSVDVGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGV-NVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINKYRLQMARDFGATVAVNVSEFQNQQQLTAQMRKVMSEIG 237          
The following BLAST results are available for this feature:
BLAST of CK935798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
TDH_YERPS1.207e-3136.84L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERPP1.207e-3136.84L-threonine 3-dehydrogenase OS=Yersinia pestis (st... [more]
TDH_YERPN1.207e-3136.84L-threonine 3-dehydrogenase OS=Yersinia pestis bv.... [more]
TDH_YERPG1.207e-3136.84L-threonine 3-dehydrogenase OS=Yersinia pestis bv.... [more]
TDH_YERPE1.207e-3136.84L-threonine 3-dehydrogenase OS=Yersinia pestis GN=... [more]
TDH_YERPB1.207e-3136.84L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERPA1.207e-3136.84L-threonine 3-dehydrogenase OS=Yersinia pestis bv.... [more]
TDH_YERP31.207e-3136.84L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERE81.577e-3136.84L-threonine 3-dehydrogenase OS=Yersinia enterocoli... [more]
TDH_FRAP21.577e-3135.62L-threonine 3-dehydrogenase OS=Francisella philomi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004390_E03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935798 ID=CK935798; Name=CK935798; organism=Citrus sinensis; type=EST; length=857bp
GGGGATCCAGAATCAGAATAAATGGTAGCTTAAAATGTTGTGTACAGAGT
GAAGTCTCTTCTGTGCACTTGTGTTTTTGAAGGGTAAAAAGCAAATATGG
GCAAAGGAGGGATGTCACAAGGAGAAAAGAAGGATGGAGAAGAAGTTAAC
ATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAACCTTTTGA
GCTTCCTTCTCTGGGACCATATGATGTTTTAGTCAGGATGAAAGCCGTTG
GTATTTGTGGAAGTGATGTGCATTATCTCAAGACCTTGAGGTGTGCCGAT
TTTGTTGTGAAAGAGCCTATGGTGATTGGGCACGAGTGTGCTGGGGTCAT
AGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGG
CCCTGGAACCCGGGATCAGCTGCTGGCGATGCGATCACTGCAAAGGAGGT
CGATACAATTTGTGTCCAGAGATGAAATTTTTTGCAACTCCGCCCGTTCA
TGGTTCCCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGC
TGCCGGACAATGTGAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGT
GTTGGTCTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGT
GCTTATCATGGGAGCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTC
GTGCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGT
TTATCTGTTGCAAAGGAACTTGGTGCAGATAATATTGTTAAAGTTTTCAC
AAATTTGCAGGACATAGCTGAAGAAGTNNNNAAGATACAGAAAGCCATGG
GGANNNN
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