CK935798

Overview
NameCK935798
Unique NameCK935798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SHEHH (L-threonine 3-dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=tdh PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.743e-30
Identity = 74/209 (35.41%), Postives = 118/209 (56.46%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G+ A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V    L+D+ +E+
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVGMGQEVRGFTIGDRVSGEGHITCGHCRNCRGGRTHLCRNTSGVGVNR-EGAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELAQKMGATRAVNVAKEKLEDVMQEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_VIBF1 (L-threonine 3-dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.276e-30
Identity = 75/211 (35.55%), Postives = 116/211 (54.98%), Query Frame = 1
Query:  199 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVFT-NLQDIAEEV 828
            E P +G  D+L+R+K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G+ +  +V PA   FK+P  +S +  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA  +VI DV++YRL +AK++G    V V    L+D+  E+
Sbjct:   21 EKPEMGHNDLLIRIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRT-GAFSEYLVIPAFNAFKIPAGISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLDLAKKMGVTRAVNVMNEKLEDVMSEL 229          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SHESM (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain MR-4) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.276e-30
Identity = 74/209 (35.41%), Postives = 118/209 (56.46%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L+++K   ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            GS A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V   +L+D+ +E+
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKMGATRAVNVAQESLKDVMKEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SHESA (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.276e-30
Identity = 74/209 (35.41%), Postives = 118/209 (56.46%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L+++K   ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            GS A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V   +L+D+ +E+
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKMGATRAVNVAQESLKDVMKEL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_LEGPH (L-threonine 3-dehydrogenase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=tdh PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.276e-30
Identity = 77/220 (35.00%), Postives = 118/220 (53.64%), Query Frame = 1
Query:  187 IQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKV-FTNLQDIAEEVXKIQ 840
            +Q   +P  G  DVL+++K   ICG+D+H       A   +  PM +GHE  G I +VG EV+ L  G RV+ E  I+C  C +C+ G+ +LC   +      P  G  A  +  PA     LPDN++ E+ A+ +P     H     ++  E +VLI GAGPIG++     R  GA  +VI DV+D+RL +A+++G    V V +  L D+A E+  ++
Sbjct:   15 MQDIPVPEYGVNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGKEVQGLKVGQRVSGEGHITCGFCRNCRAGKRHLCRNTLGVGVNRP--GCFAEYLALPATNVIALPDNITEEQAAILDPFGNAAHCALAFDVVGE-DVLITGAGPIGIMAAAIVRHIGARHVVITDVNDHRLELARQMGVSRAVNVKYQKLSDVANELGMLE 231          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_AERHH (L-threonine 3-dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.276e-30
Identity = 75/198 (37.88%), Postives = 111/198 (56.06%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKV 795
            P LG  D+L++++   ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC   +      P  G+ A  +V PA   FKLPDNV  E  A+ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V
Sbjct:   21 PELGHNDLLIKIRKTAICGTDIHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVRGFAVGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GAFAEYLVIPAFNAFKLPDNVPDELAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKMGATRAVNV 215          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_SHELP (L-threonine 3-dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.973e-30
Identity = 73/209 (34.93%), Postives = 118/209 (56.46%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G + ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +AK++GA   V V    L+D+ +++
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVEIGQEVRGFQIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELAKKMGATRAVNVAKEKLEDVMQDL 227          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_LEGPL (L-threonine 3-dehydrogenase OS=Legionella pneumophila (strain Lens) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.973e-30
Identity = 77/220 (35.00%), Postives = 118/220 (53.64%), Query Frame = 1
Query:  187 IQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKV-FTNLQDIAEEVXKIQ 840
            +Q   +P  G  DVL+++K   ICG+D+H       A   +  PM +GHE  G I +VG EV+ L  G RV+ E  I+C  C +C+ G+ +LC   +      P  G  A  +  PA     LPDN++ E+ A+ +P     H     ++  E +VLI GAGPIG++     R  GA  +VI DV+D+RL +A+++G    V V +  L D+A E+  ++
Sbjct:   15 MQDIPVPEYGVNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGKEVQGLKVGQRVSGEGHITCGFCRNCRAGKRHLCRNTLGVGVNRP--GCFAEYLALPATNVIALPDNITEEQAAILDPFGNAAHCALAFDVVGE-DVLITGAGPIGIMAAAIVRHIGARHVVITDVNDHRLELARKMGVSRAVNVKYQKLSDVANELGMLE 231          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_LEGPC (L-threonine 3-dehydrogenase OS=Legionella pneumophila (strain Corby) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.973e-30
Identity = 77/220 (35.00%), Postives = 118/220 (53.64%), Query Frame = 1
Query:  187 IQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKV-FTNLQDIAEEVXKIQ 840
            +Q   +P  G  DVL+++K   ICG+D+H       A   +  PM +GHE  G I +VG EV+ L  G RV+ E  I+C  C +C+ G+ +LC   +      P  G  A  +  PA     LPDN++ E+ A+ +P     H     ++  E +VLI GAGPIG++     R  GA  +VI DV+D+RL +A+++G    V V +  L D+A E+  ++
Sbjct:   15 MQDVPVPEYGVNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGKEVQGLKVGQRVSGEGHITCGFCRNCRAGKRHLCRNTLGVGVNRP--GCFAEYLALPATNVIALPDNITEEQAAILDPFGNAAHCALAFDVVGE-DVLITGAGPIGIMAAAIVRHIGARHVVITDVNDHRLELARQMGVSRAVNVKYQKLSDVANELGMLE 231          
BLAST of CK935798 vs. ExPASy Swiss-Prot
Match: TDH_ESCF3 (L-threonine 3-dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.973e-30
Identity = 76/210 (36.19%), Postives = 118/210 (56.19%), Query Frame = 1
Query:  205 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVF-TNLQDIAEEV 828
            P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+ GR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V   NL+D+  E+
Sbjct:   21 PELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLEDVMAEL 227          
The following BLAST results are available for this feature:
BLAST of CK935798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
TDH_SHEHH1.743e-3035.41L-threonine 3-dehydrogenase OS=Shewanella halifaxe... [more]
TDH_VIBF12.276e-3035.55L-threonine 3-dehydrogenase OS=Vibrio fischeri (st... [more]
TDH_SHESM2.276e-3035.41L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_SHESA2.276e-3035.41L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_LEGPH2.276e-3035.00L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]
TDH_AERHH2.276e-3037.88L-threonine 3-dehydrogenase OS=Aeromonas hydrophil... [more]
TDH_SHELP2.973e-3034.93L-threonine 3-dehydrogenase OS=Shewanella loihica ... [more]
TDH_LEGPL2.973e-3035.00L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]
TDH_LEGPC2.973e-3035.00L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]
TDH_ESCF32.973e-3036.19L-threonine 3-dehydrogenase OS=Escherichia ferguso... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004390_E03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935798 ID=CK935798; Name=CK935798; organism=Citrus sinensis; type=EST; length=857bp
GGGGATCCAGAATCAGAATAAATGGTAGCTTAAAATGTTGTGTACAGAGT
GAAGTCTCTTCTGTGCACTTGTGTTTTTGAAGGGTAAAAAGCAAATATGG
GCAAAGGAGGGATGTCACAAGGAGAAAAGAAGGATGGAGAAGAAGTTAAC
ATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAACCTTTTGA
GCTTCCTTCTCTGGGACCATATGATGTTTTAGTCAGGATGAAAGCCGTTG
GTATTTGTGGAAGTGATGTGCATTATCTCAAGACCTTGAGGTGTGCCGAT
TTTGTTGTGAAAGAGCCTATGGTGATTGGGCACGAGTGTGCTGGGGTCAT
AGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGG
CCCTGGAACCCGGGATCAGCTGCTGGCGATGCGATCACTGCAAAGGAGGT
CGATACAATTTGTGTCCAGAGATGAAATTTTTTGCAACTCCGCCCGTTCA
TGGTTCCCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGC
TGCCGGACAATGTGAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGT
GTTGGTCTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGT
GCTTATCATGGGAGCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTC
GTGCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGT
TTATCTGTTGCAAAGGAACTTGGTGCAGATAATATTGTTAAAGTTTTCAC
AAATTTGCAGGACATAGCTGAAGAAGTNNNNAAGATACAGAAAGCCATGG
GGANNNN
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