CK935802

Overview
NameCK935802
Unique NameCK935802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935802 vs. ExPASy Swiss-Prot
Match: ARP3_CAEBR (Actin-related protein 3 OS=Caenorhabditis briggsae GN=arx-1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.548e-45
Identity = 97/249 (38.96%), Postives = 139/249 (55.82%), Query Frame = 1
Query:  130 VCDNGTGMVKAGFAGDDAPRAVFPSIVG-------------RPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSA 810
            V DNGTG  K G+AG+  P+ + PS +              R  +     G+   D ++GDEA S      T+KYPI HGIV +WD ME+ W    +  LR  PE+H  LLTE PLN   NRE   +IMFE+FN P +Y+A+QAVL+L AS ++        TG+V+DSGDGV+H +P+ +GY +   I  + +AGRD+T  +  +L ER ++       E+ + +KEK  Y+  D  +E     T S+
Sbjct:   10 VIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNAQALRWNNRVGGAGIDDLDFFIGDEALSPAASNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTASWQSREASDRSLTGLVIDSGDGVTHCIPVADGYVIGSCIKHIPIAGRDITYFIQNLLREREHTIPAEQSYEVAKTIKEKFCYVCPDVMKEFVKYDTDSS 258          
BLAST of CK935802 vs. ExPASy Swiss-Prot
Match: ARP3_CAEEL (Actin-related protein 3 OS=Caenorhabditis elegans GN=arx-1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.464e-45
Identity = 96/248 (38.71%), Postives = 137/248 (55.24%), Query Frame = 1
Query:  130 VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG------------VMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSA 810
            V DNGTG  K G+AG+  P+ + PS +                   V  G+   D ++GDEA S      T+KYPI HGIV +WD ME+ W    +  LR  PE+H  LLTE PLN   NRE   +IMFE+FN P +Y+A+QAVL+L AS  +        TG+V+DSGDGV+H +P+ +GY +   I  + +AGRD+T  +  +L +R ++       E+ + +KEK  Y+  D  +E     T +A
Sbjct:   10 VIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGIDDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVIDSGDGVTHCIPVADGYVIGSCIKHIPIAGRDITYFIQSLLRDREHTIPAEQSYEVAKMIKEKFCYVCPDVMKEFVKYDTDAA 257          
BLAST of CK935802 vs. ExPASy Swiss-Prot
Match: ARP3_DICDI (Actin-related protein 3 OS=Dictyostelium discoideum GN=arpC PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.108e-44
Identity = 92/241 (38.17%), Postives = 135/241 (56.02%), Query Frame = 1
Query:  100 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQK------DAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT-------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQE 783
            M     +  +V DNGTG  K G+AG++ P  + P+ +      G      QK      D ++GDEA +      +  P++HG + NW  ME+ W H  +  LR  PE+H  LLTE PLN   NRE   +IMFETFN P +Y+A+QAVL+L AS  +       TG V+DSGDGV+H +PI EGY +  +I  + +AGRD++  + +I+ ER  +       EI + +KE+ +Y+  D  +E
Sbjct:    1 MNPASGLPAVVIDNGTGYTKMGYAGNNDPSFIIPTTIATQSSKGKQTAASQKKGVEDLDFFIGDEAIANSKTYDMTNPVKHGQIENWTHMEQYWEHCVFKYLRCEPEDHYFLLTEPPLNAPENREFTAEIMFETFNVPGLYIAVQAVLALAASWTSKNAEKTLTGTVIDSGDGVTHVIPISEGYVIGSSIKHIPIAGRDISSYVQQIMREREPNIPPAESLEIAKRVKEQYSYVCPDIVKE 241          
BLAST of CK935802 vs. ExPASy Swiss-Prot
Match: ARP3_ACACA (Actin-related protein 3 OS=Acanthamoeba castellanii GN=ARP3 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.134e-44
Identity = 93/247 (37.65%), Postives = 135/247 (54.66%), Query Frame = 1
Query:  127 LVCDNGTGMVKAGFAGDDAPRAVFPSIVG----------RPRHTGVMVGMGQK----DAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKT 801
            +V DNGTG  K G+AG+  P+ + P+ +           R R        G+     D ++GDEA     +  +  P+ HG V NW  ME+ W H  +  LR  PE+H  LLTE PLN   NRE   +IMFETFN P +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +  +I  + LAGRD+T+ ++++L ER          E+ + +KE  +Y+  D  +E +   T
Sbjct:    9 VVIDNGTGYTKMGYAGNTEPQYIIPTAIATKGIAEDPRCRARRWWCPWAAGKNIADLDFFIGDEAYENSKVYQITMPVRHGQVENWTHMEQFWEHCIFKYLRCEPEDHHFLLTEPPLNAPENREYTAEIMFETFNVPGLYIAVQAVLALAASWTSKQVTEKTLTGTVIDSGDGVTHVIPVAEGYVIGSSIKHIPLAGRDITNFVLQLLRERNEKIPPAETLEVAKRIKETFSYVCPDIVKEFKKYDT 255          
BLAST of CK935802 vs. ExPASy Swiss-Prot
Match: ACT_CHERU (Actin (Fragment) OS=Chenopodium rubrum PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.193e-43
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 1
Query:  355 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 609
            KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG
Sbjct:    1 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 85          
BLAST of CK935802 vs. ExPASy Swiss-Prot
Match: ARP3B_MOUSE (Actin-related protein 3B OS=Mus musculus GN=Actr3b PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.782e-43
Identity = 95/238 (39.92%), Postives = 133/238 (55.88%), Query Frame = 1
Query:  118 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--------RPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQE 783
            + P V D GTG  K G+AG+  P+ + PS +               V+ G+   D ++GDEA  K    T K+PI HGIV +WD ME+      +  LR  PE+H  L+TE PLN   NRE + +IMFE+FN P +Y+A+QAVL+L AS  +        TGIV+DSGDGV+H +P+ EGY +   I  + +AGRD+T  + ++L ER          E  + +KEK  YI  D  +E
Sbjct:    5 LPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYAT-KWPIRHGIVEDWDLMERFMEQVVFKYLRAEPEDHYFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYICPDIVRE 241          
BLAST of CK935802 vs. ExPASy Swiss-Prot
Match: ARP3B_HUMAN (Actin-related protein 3B OS=Homo sapiens GN=ACTR3B PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.858e-43
Identity = 94/238 (39.50%), Postives = 133/238 (55.88%), Query Frame = 1
Query:  118 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--------RPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQE 783
            + P V D GTG  K G+AG+  P+ + PS +               V+ G+   D ++GDEA  K    T K+PI HGI+ +WD ME+      +  LR  PE+H  L+TE PLN   NRE + +IMFE+FN P +Y+A+QAVL+L AS  +        TGIV+DSGDGV+H +P+ EGY +   I  + +AGRD+T  + ++L ER          E  + +KEK  YI  D  +E
Sbjct:    5 LPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYAT-KWPIRHGIIEDWDLMERFMEQVVFKYLRAEPEDHYFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYICPDIVKE 241          
BLAST of CK935802 vs. ExPASy Swiss-Prot
Match: ARP3_DROME (Actin-related protein 3 OS=Drosophila melanogaster GN=Arp66B PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.973e-42
Identity = 95/234 (40.60%), Postives = 130/234 (55.56%), Query Frame = 1
Query:  130 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQE 783
            V D GTG  K GFAG+  P+ + PS         VG      +  G+   D ++GDEA    G  ++KYP+ HG+V +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFETFN P +Y+A+QAVL+L AS  +        TGIV+DSGDGV+H +P+ EGY +   I  + +AGR++T  +  +L ER          E  + +KEK  YI  D  +E
Sbjct:    9 VIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVGDTNTRRITKGIEDLDFFIGDEAFDATGY-SIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFETFNVPGLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKE 241          
BLAST of CK935802 vs. ExPASy Swiss-Prot
Match: ARP3_SCHPO (Actin-related protein 3 OS=Schizosaccharomyces pombe GN=act2 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.577e-42
Identity = 101/254 (39.76%), Postives = 140/254 (55.12%), Query Frame = 1
Query:  124 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG---------MGQK--------------DAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY--SFTTTAEREIVRDMKEKLAYIALDYEQE 783
            P++ DNGTG  K G+AG+DAP  VFP+++   R  G   G         M  K              D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE PLNP  NRE   +IMFE+FN   +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +  +I  + LAGRD+T  +  +L +R    S   TAER     +KE+  Y+  D  +E
Sbjct:    7 PIIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKE 254          
BLAST of CK935802 vs. ExPASy Swiss-Prot
Match: ARP3_RAT (Actin-related protein 3 OS=Rattus norvegicus GN=Actr3 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.577e-42
Identity = 95/243 (39.09%), Postives = 133/243 (54.73%), Query Frame = 1
Query:  130 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSA 810
            V D GTG  K G+AG+  P+ + PS         VG      VM G+   D ++GDEA  K    T K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFE+FN P +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +   I  + +AGRD+T  + ++L +R          E  + +KE+ +Y+  D  +E     T  +
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYAT-KWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGS 250          
The following BLAST results are available for this feature:
BLAST of CK935802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 485
Match NameE-valueIdentityDescription
ARP3_CAEBR5.548e-4538.96Actin-related protein 3 OS=Caenorhabditis briggsae... [more]
ARP3_CAEEL9.464e-4538.71Actin-related protein 3 OS=Caenorhabditis elegans ... [more]
ARP3_DICDI2.108e-4438.17Actin-related protein 3 OS=Dictyostelium discoideu... [more]
ARP3_ACACA6.134e-4437.65Actin-related protein 3 OS=Acanthamoeba castellani... [more]
ACT_CHERU5.193e-4398.82Actin (Fragment) OS=Chenopodium rubrum PE=3 SV=1[more]
ARP3B_MOUSE6.782e-4339.92Actin-related protein 3B OS=Mus musculus GN=Actr3b... [more]
ARP3B_HUMAN8.858e-4339.50Actin-related protein 3B OS=Homo sapiens GN=ACTR3B... [more]
ARP3_DROME1.973e-4240.60Actin-related protein 3 OS=Drosophila melanogaster... [more]
ARP3_SCHPO2.577e-4239.76Actin-related protein 3 OS=Schizosaccharomyces pom... [more]
ARP3_RAT2.577e-4239.09Actin-related protein 3 OS=Rattus norvegicus GN=Ac... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004390_D03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935802 ID=CK935802; Name=CK935802; organism=Citrus sinensis; type=EST; length=852bp
GGGGGCACAGCGCAAAGTCCGTTAGTGAGAGAGAGAATCAGAATAGAAAC
AAAAGGAAGAAAAAAAAATTATTTTTTTTTAGAAATTCGAAGTTAGAAAA
TGGCAGATACTGAGGATATTCAGCCTCTTGTTTGTGACAATGGGACTGGA
ATGGTGAAGGCTGGATTTGCTGGAGATGATGCTCCAAGAGCTGTGTTCCC
CAGCATTGTGGGTCGCCCTCGCCACACTGGAGTTATGGTTGGTATGGGTC
AGAAAGATGCCTATGTTGGTGATGAGGCTCAATCCAAAAGAGGTATTTTG
ACTTTGAAATACCCAATCGAGCATGGCATTGTTAGCAACTGGGACGATAT
GGAGAAAATCTGGCATCACACATTTTATAATGAGCTTCGTGTGGCTCCGG
AAGAGCATCCGGTTCTTCTCACTGAGGCTCCCCTTAATCCGAAGGCCAAT
CGTGAGAAGATGACACAGATTATGTTTGAGACCTTTAACACCCCTGCTAT
GTATGTTGCTATCCAGGCTGTGCTTTCTCTCTATGCTAGCGGTCGTACAA
CTGGTATTGTTCTGGACTCTGGAGATGGTGTCAGCCACACAGTTCCCATC
TATGAAGGTTATGCCCTTCCACATGCCATCCTCCGACTGGACCTGGCAGG
TCGTGACCTTACAGACGCCCTTATGAAAATCTTAACCGAGCGTGGTTATT
CTTTCACCACAACTGCTGAGCGGGAAATTGTTAGGGACATGAAGGAGAAA
TTAGCCTACATTGCGCTTGACTATGAACAAGAGCTAGAGACAGCAAAGAC
CAGCTCAGCTGTGGAGAAGAGCTATGAACTACCTGATGGGCAGGTCATCA
CT
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