CK935802

Overview
NameCK935802
Unique NameCK935802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935802 vs. ExPASy Swiss-Prot
Match: ARP10_BOVIN (Actin-related protein 10 OS=Bos taurus GN=ACTR10 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.741e-12
Identity = 59/248 (23.79%), Postives = 111/248 (44.76%), Query Frame = 1
Query:  127 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAERE------------IVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELP 834
            +V D G    K GFAG+  PR + PS++ +                    A   + I  ++Y I    + ++  +++  H  ++  L V P +  V++ E+ L P   RE +T+++F+ F  P++ +A   +++L   G  + +VLD G   S  +PIYEG  + +    L L G+ L   L   L E+    T  A+ +            I+ D+K +  +++ D ++ L        ++ + E P
Sbjct:   16 VVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKPIRVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGILEDIKVRTCFVS-DLKRGLNIQAAKFNIDGNTERP 240          
BLAST of CK935802 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSJ (Actin-related protein 8 OS=Oryza sativa subsp. japonica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 46/149 (30.87%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  370 TFYNELRVAPEEHPVLLT----------EAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQE 783
            T Y  ++V P   P+++            A  + K  R+ +  ++F+  N PA+    QAVL+LYA+ RT+GIV++ G   +  VPI++G  +    +  +      LT  L +++ +R  +F +      VR +KEKL Y+A DYE E
Sbjct:  188 TIYTRMQVKPSTQPIIVVLPLCHSDDTESARASRKQYRDTLYSVLFD-MNVPAVCSVDQAVLALYAAKRTSGIVVNIGFNATSIVPIFQGRVMHEIGVETVGQGALKLTGFLKELMQQRNITFESL---YTVRTIKEKLCYVAADYEAE 332          
BLAST of CK935802 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSI (Actin-related protein 8 OS=Oryza sativa subsp. indica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 46/149 (30.87%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  370 TFYNELRVAPEEHPVLLT----------EAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQE 783
            T Y  ++V P   P+++            A  + K  R+ +  ++F+  N PA+    QAVL+LYA+ RT+GIV++ G   +  VPI++G  +    +  +      LT  L +++ +R  +F +      VR +KEKL Y+A DYE E
Sbjct:  188 TIYTRMQVKPSTQPIIVVLPLCHSDDTESARASRKQYRDTLYSVLFD-MNVPAVCSVDQAVLALYAAKRTSGIVVNIGFNATSIVPIFQGRVMHEIGVETVGQGALKLTGFLKELMQQRNITFESL---YTVRTIKEKLCYVAADYEAE 332          
BLAST of CK935802 vs. ExPASy Swiss-Prot
Match: ARP6_DEBHA (Actin-like protein ARP6 OS=Debaryomyces hansenii GN=ARP6 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.801e-11
Identity = 67/258 (25.97%), Postives = 106/258 (41.09%), Query Frame = 1
Query:  121 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDE---AQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFY----NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN-------TPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVIT 852
            Q  V DNG+  +KAGF+  DAP           +H   +        YVG+E     +    +  K P +HG + +W+  + +W +TF     N+   A   H + LTE P           QI+FE +         PA  V    + S  +      +V+DSG   +  VPI         + +L + G  L   L +I++ R Y      E  ++  +KEK  ++A D+E+ L   K        + LPD +  T
Sbjct:    4 QYFVIDNGSYNIKAGFSNQDAP----------IKHQNALSKARDGLIYVGNEYLVQTNNYSGMIFKRPYDHGHLISWETEKAVWDYTFNKASPNQELDASITH-LTLTETPFQLPQLSMNTDQIVFEEYGFNEYYRCAPASLVPWSNLGSSESKNNDFTLVVDSGYSGTWIVPIIYQNVYWKGVKKLPIGGAALNGLLREIISFRHYDIAD--EPVLINTIKEKTCFMATDFEKSLANRKKYRC---EFILPDFKTTT 245          
BLAST of CK935802 vs. ExPASy Swiss-Prot
Match: ARP8_ARATH (Actin-related protein 8 OS=Arabidopsis thaliana GN=ARP8 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 54/164 (32.93%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  370 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYE 828
            T +  ++V P   P++++  PL       + KA+R ++   +F      N PA+    QAVL+LYA+ RT+GIV++ G  V   +PI  G  +    +  +      LT  L + + E   SF +      VR +KEKL Y+ALDY+ EL +  T ++VE S E
Sbjct:  182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQAVLALYAARRTSGIVVNIGFQVITILPILHGKVMRQVGVEVIGFGALKLTGFLKEKMQENNISFQSL---YTVRTLKEKLCYVALDYKAEL-SKDTQASVEVSGE 340          
The following BLAST results are available for this feature:
BLAST of CK935802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 485
Match NameE-valueIdentityDescription
ARP10_BOVIN4.741e-1223.79Actin-related protein 10 OS=Bos taurus GN=ACTR10 P... [more]
ARP8_ORYSJ1.056e-1130.87Actin-related protein 8 OS=Oryza sativa subsp. jap... [more]
ARP8_ORYSI1.056e-1130.87Actin-related protein 8 OS=Oryza sativa subsp. ind... [more]
ARP6_DEBHA1.801e-1125.97Actin-like protein ARP6 OS=Debaryomyces hansenii G... [more]
ARP8_ARATH3.073e-1132.93Actin-related protein 8 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004390_D03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935802 ID=CK935802; Name=CK935802; organism=Citrus sinensis; type=EST; length=852bp
GGGGGCACAGCGCAAAGTCCGTTAGTGAGAGAGAGAATCAGAATAGAAAC
AAAAGGAAGAAAAAAAAATTATTTTTTTTTAGAAATTCGAAGTTAGAAAA
TGGCAGATACTGAGGATATTCAGCCTCTTGTTTGTGACAATGGGACTGGA
ATGGTGAAGGCTGGATTTGCTGGAGATGATGCTCCAAGAGCTGTGTTCCC
CAGCATTGTGGGTCGCCCTCGCCACACTGGAGTTATGGTTGGTATGGGTC
AGAAAGATGCCTATGTTGGTGATGAGGCTCAATCCAAAAGAGGTATTTTG
ACTTTGAAATACCCAATCGAGCATGGCATTGTTAGCAACTGGGACGATAT
GGAGAAAATCTGGCATCACACATTTTATAATGAGCTTCGTGTGGCTCCGG
AAGAGCATCCGGTTCTTCTCACTGAGGCTCCCCTTAATCCGAAGGCCAAT
CGTGAGAAGATGACACAGATTATGTTTGAGACCTTTAACACCCCTGCTAT
GTATGTTGCTATCCAGGCTGTGCTTTCTCTCTATGCTAGCGGTCGTACAA
CTGGTATTGTTCTGGACTCTGGAGATGGTGTCAGCCACACAGTTCCCATC
TATGAAGGTTATGCCCTTCCACATGCCATCCTCCGACTGGACCTGGCAGG
TCGTGACCTTACAGACGCCCTTATGAAAATCTTAACCGAGCGTGGTTATT
CTTTCACCACAACTGCTGAGCGGGAAATTGTTAGGGACATGAAGGAGAAA
TTAGCCTACATTGCGCTTGACTATGAACAAGAGCTAGAGACAGCAAAGAC
CAGCTCAGCTGTGGAGAAGAGCTATGAACTACCTGATGGGCAGGTCATCA
CT
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