CK935896

Overview
NameCK935896
Unique NameCK935896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_METPP (RNA pyrophosphohydrolase OS=Methylibium petroleiphilum (strain PM1) GN=rppH PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.981e-23
Identity = 59/151 (39.07%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  195 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGV--SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFT 641
            EG+R NVGI L+N   ++F   R+    SWQ PQGGI   E P+ A  REL EE G+      +LA    WL Y+ P      ++ +  G ++GQ Q WFLL+ TG++ ++NL     + PEF  W+W      LE  +DFK+ VY+   T
Sbjct:    5 EGFRPNVGIVLLNQRNQVFWGKRIRT-HSWQFPQGGIKYGETPEQAMYRELHEEVGLQPEHVRILARTRDWLRYEVPDHY---IRREARGHYRGQKQIWFLLQLTGRDNDMNLRA--CDHPEFDAWRWNEYWVPLEVVIDFKRDVYQMALT 149          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_LEPCP (RNA pyrophosphohydrolase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rppH PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.981e-23
Identity = 58/151 (38.41%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  195 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGV--SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFT 641
            EG+R NVGI L+N   ++F   R+    SWQ PQGGI   E P+ A  REL EE G+      ++A    WL Y+ P      ++    G +KGQ Q WFLL+ TG++ ++NL    ++ PEF  W+W      LE  ++FK+ VY+   T
Sbjct:    5 EGFRPNVGIILLNQRSEVFWGKRIRT-HSWQFPQGGIKHGESPEQAMFRELHEEVGLFPDHVRIIARTRDWLRYEVPDHF---IRRDARGHYKGQKQIWFLLQLTGRDSDMNLRA--TDHPEFDAWRWHDYWVPLEVVIEFKRNVYQMALT 149          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_XANOR (RNA pyrophosphohydrolase OS=Xanthomonas oryzae pv. oryzae GN=rppH PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.304e-22
Identity = 62/159 (38.99%), Postives = 84/159 (52.83%), Query Frame = 3
Query:  192 PEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGV--SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 662
            P+G+R NVGI L+    ++F A R+   D WQ PQGG++ +E P  A  REL+EETG+     E+L   P WL Y  P     + + Q      GQ Q WFLL+FTG E  + L  D ++ PEF  W+W+     +E  V FK+ VY        P  Q
Sbjct:    4 PDGFRPNVGIVLMRQDGQVFWARRVR-RDGWQFPQGGMNTDETPVEAMYRELREETGLLPEHVELLGATPGWLRYRLPSRAVRRNERQ---VCIGQKQVWFLLRFTGDESHLKL--DHTDTPEFDHWRWVDFWYPVEHVVMFKRGVYARALRHLAPIAQ 156          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_XANOM (RNA pyrophosphohydrolase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rppH PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.304e-22
Identity = 62/159 (38.99%), Postives = 84/159 (52.83%), Query Frame = 3
Query:  192 PEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGV--SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 662
            P+G+R NVGI L+    ++F A R+   D WQ PQGG++ +E P  A  REL+EETG+     E+L   P WL Y  P     + + Q      GQ Q WFLL+FTG E  + L  D ++ PEF  W+W+     +E  V FK+ VY        P  Q
Sbjct:    4 PDGFRPNVGIVLMRQDGQVFWARRVR-RDGWQFPQGGMNTDETPVEAMYRELREETGLLPEHVELLGATPGWLRYRLPSRAVRRNERQ---VCIGQKQVWFLLRFTGDESHLKL--DHTDTPEFDHWRWVDFWYPVEHVVMFKRGVYARALRHLAPIAQ 156          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_STRM5 (RNA pyrophosphohydrolase OS=Stenotrophomonas maltophilia (strain R551-3) GN=rppH PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.304e-22
Identity = 63/159 (39.62%), Postives = 83/159 (52.20%), Query Frame = 3
Query:  192 PEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGV--SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 662
            P+GYR NVGI L+    ++F A R+   D WQ PQGG++ +E P  A  REL+EETG+     EVL   P WL Y  P     + + Q      GQ Q WFLL+ TG E  + L  D ++ PEF  W+W+     +E  V FK+ VY        P  Q
Sbjct:    4 PDGYRPNVGIVLMRQDGQVFWARRVR-RDGWQFPQGGMNTDETPVEAMYRELQEETGLLPEHVEVLGATPGWLRYKLPARAIRRNERQ---VCIGQKQVWFLLRLTGDESHVCL--DHTDSPEFDHWRWVDFWYPVEHVVMFKRGVYARALRHLAPLAQ 156          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_PSEA6 (RNA pyrophosphohydrolase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rppH PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.304e-22
Identity = 62/155 (40.00%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  195 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGV--SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTP 653
            EG+R NVGI + NS  ++F A R     SWQ PQGGIDE E  +    REL EE G+     ++LA    WL Y  P   +  ++        GQ QKWFLL+ T KE++++LL  +S  PEF +W+W+S    +   V FK+ VY+     F P
Sbjct:    5 EGFRANVGIVICNSLGQVFWARRYG-QHSWQFPQGGIDEGETAEQTMYRELYEEVGLKPEHVKILAVTKNWLRYKLP---KRLIRQGSAPVCIGQKQKWFLLQLTCKEQDVDLL--QSGHPEFDDWRWVSFWYPVRNVVSFKREVYRRAMKEFAP 153          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_XANC5 (RNA pyrophosphohydrolase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rppH PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.703e-22
Identity = 62/159 (38.99%), Postives = 84/159 (52.83%), Query Frame = 3
Query:  192 PEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGV--SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 662
            P+G+R NVGI L+    ++F A R+   D WQ PQGG++ +E P  A  REL+EETG+     E+L   P WL Y  P     + + Q      GQ Q WFLL+FTG E  + L  D ++ PEF  W+W+     +E  V FK+ VY        P  Q
Sbjct:    4 PDGFRPNVGIVLMRQDGQVFWARRVR-RDGWQFPQGGMNTDETPVEAMYRELREETGLLPEHVELLGATPGWLRYRLPSRAVRRNERQ---VCIGQKQVWFLLQFTGDESHLKL--DHTDTPEFDHWRWVDFWYPVEHVVMFKRGVYARALRHLAPLAQ 156          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_XANAC (RNA pyrophosphohydrolase OS=Xanthomonas axonopodis pv. citri GN=rppH PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.703e-22
Identity = 62/159 (38.99%), Postives = 84/159 (52.83%), Query Frame = 3
Query:  192 PEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGV--SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 662
            P+G+R NVGI L+    ++F A R+   D WQ PQGG++ +E P  A  REL+EETG+     E+L   P WL Y  P     + + Q      GQ Q WFLL+FTG E  + L  D ++ PEF  W+W+     +E  V FK+ VY        P  Q
Sbjct:    4 PDGFRPNVGIVLMRQDGQVFWARRVR-RDGWQFPQGGMNTDETPVEAMYRELREETGLLPEHVELLGATPGWLRYRLPSRAVRRNERQ---VCIGQKQVWFLLQFTGDESHLKL--DHTDTPEFDHWRWVDFWYPVEHVVMFKRGVYARALRHLAPLAQ 156          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_HAES2 (RNA pyrophosphohydrolase OS=Haemophilus somnus (strain 2336) GN=rppH PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.224e-22
Identity = 61/153 (39.87%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  195 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVS--SAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647
            +GYR NVGI + N+ +++  A R    +SWQ PQGGI++NE  + A  REL EE G++    E+L    +WL Y  P   +  L+H       GQ Q+WFLL+    E+ IN+   KS  PEF  W+W+S    + + V FKK VY++V   F
Sbjct:    5 DGYRPNVGIVICNAERQVLWAKRYG-QNSWQFPQGGINDNETAEQAMYRELYEEAGLTPKDVEILYVSKHWLRYKLP---KRLLRHDNRPICIGQKQRWFLLQLVSDEKRINMQHTKS--PEFDGWRWVSFWYPVRQVVTFKKDVYRKVMKEF 151          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_HAES1 (RNA pyrophosphohydrolase OS=Haemophilus somnus (strain 129Pt) GN=rppH PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.224e-22
Identity = 61/153 (39.87%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  195 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVS--SAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647
            +GYR NVGI + N+ +++  A R    +SWQ PQGGI++NE  + A  REL EE G++    E+L    +WL Y  P   +  L+H       GQ Q+WFLL+    E+ IN+   KS  PEF  W+W+S    + + V FKK VY++V   F
Sbjct:    5 DGYRPNVGIVICNAERQVLWAKRYG-QNSWQFPQGGINDNETAEQAMYRELYEEAGLTPKDVEILYVSKHWLRYKLP---KRLLRHDNRPICIGQKQRWFLLQLVSDEKRINMQHTKS--PEFDGWRWVSFWYPVRQVVTFKKDVYRKVMKEF 151          
The following BLAST results are available for this feature:
BLAST of CK935896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 325
Match NameE-valueIdentityDescription
RPPH_METPP9.981e-2339.07RNA pyrophosphohydrolase OS=Methylibium petroleiph... [more]
RPPH_LEPCP9.981e-2338.41RNA pyrophosphohydrolase OS=Leptothrix cholodnii (... [more]
RPPH_XANOR1.304e-2238.99RNA pyrophosphohydrolase OS=Xanthomonas oryzae pv.... [more]
RPPH_XANOM1.304e-2238.99RNA pyrophosphohydrolase OS=Xanthomonas oryzae pv.... [more]
RPPH_STRM51.304e-2239.62RNA pyrophosphohydrolase OS=Stenotrophomonas malto... [more]
RPPH_PSEA61.304e-2240.00RNA pyrophosphohydrolase OS=Pseudoalteromonas atla... [more]
RPPH_XANC51.703e-2238.99RNA pyrophosphohydrolase OS=Xanthomonas campestris... [more]
RPPH_XANAC1.703e-2238.99RNA pyrophosphohydrolase OS=Xanthomonas axonopodis... [more]
RPPH_HAES22.224e-2239.87RNA pyrophosphohydrolase OS=Haemophilus somnus (st... [more]
RPPH_HAES12.224e-2239.87RNA pyrophosphohydrolase OS=Haemophilus somnus (st... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_C10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935896 ID=CK935896; Name=CK935896; organism=Citrus sinensis; type=EST; length=841bp
GGGGAATGGCTTTATGTTTAAGCCGATCTTTCTCCTCGTATTCCCAGCTT
CATCTTTCTTCTCTCCTCAGTCGCTGCAAGCCTAATTTCACATCCCCAAA
TTACCCTCATAAACTCCCCAAATCTACTAACCTGCCACTCGTTCATCATC
AGAATCAAATTTGCTCATCATCATACTCCATGGACGCTCCTCCAGAAGGT
TACCGAAGAAATGTCGGCATCTGTCTCATCAATTCTTCCAAAAAGATTTT
CGCCGCTTCGAGACTTGACATACCTGATAGTTGGCAAATGCCACAGGGCG
GTATTGACGAGAATGAGGATCCCAAAGTTGCTGCCTTAAGGGAATTGAAA
GAAGAAACAGGAGTCAGCTCGGCAGAAGTTCTTGCAGAGGTGCCTTATTG
GTTGACATATGACTTCCCTCCAGAAGTCAGGGAAAAACTTAAACATCAAT
GGGGAGGTGACTGGAAAGGTCAAGCACAGAAGTGGTTTCTCCTCAAGTTC
ACTGGCAAGGAGGAAGAAATCAATCTTCTTGGTGATAAATCTGAGAAACC
TGAGTTTGGCGAGTGGAAGTGGATGTCACCAGAACAAATACTTGAGCGTG
CTGTGGATTTCAAGAAACCTGTTTACAAAGAAGTTTTTACGGTTTTCACA
CCTCATCTTCAATAATATTATGTTGGAATTGTCCGAGATTCTGCAAAACT
GGGTGATAAATTGATTTGTTGAGTCACTAACTTTTCAAAGTCTTTATTGG
ATATCACATACATATCAACTGCCTTGTAATGATATGATATGATATTCTTG
TGATCGATGAAAGAAATAAAATTAAATAACCTTATTAGCAA
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