CK935896
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_RHOPB (RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain BisB18) GN=rppH PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.916e-27 Identity = 68/174 (39.08%), Postives = 94/174 (54.02%), Query Frame = 3 Query: 201 YRRNVGICLINSSKKIFAASRL------DIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLG-DKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ*YYVGIVRDSAKL 701 YR VG+ L+N+ +F RL D WQMPQGG+D EDP AA REL EET V S E L E+ WL YD P V + W G ++GQ QKW+ ++FTG + EI+++ K EF W+W + + + V FK+PVY+ V F + +D+AK+ Sbjct: 9 YRTCVGMMLLNAEGLVFIGRRLGGIEHVDETHVWQMPQGGVDPGEDPWTAAKRELYEETSVRSVEKLGEIADWLIYDIPRTVAGR---SWKGRYRGQRQKWYAVRFTGDDSEIDVVSPGGGHKAEFISWRWEPMQNLPDLIVPFKRPVYERVVKEF--------AALAKDAAKV 171
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_THICR (RNA pyrophosphohydrolase OS=Thiomicrospira crunogena (strain XCL-2) GN=rppH PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 7.385e-26 Identity = 66/161 (40.99%), Postives = 88/161 (54.66%), Query Frame = 3 Query: 195 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGV--SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ*YY 671 +GYR NVGI ++N K+F RL D+WQ PQGG+ ENE P+ A RELKEE G+ S VL WLTYD P + ++H GQ Q WFLL +E+INL + E PEF W W+ ++ V+FK+ VY + T HL ++ Sbjct: 5 DGYRPNVGIIIVNKEGKLFWGKRL-YQDAWQFPQGGVRENETPQQAVFRELKEEVGLEPSDVRVLGRTKDWLTYDLP---KHLIRHYSQPVCIGQKQIWFLLGMLSDDEKINL--NTHETPEFEGWSWVDYWVPVQNVVEFKQSVYHQALTELETHLHKFW 159
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_BARBK (RNA pyrophosphohydrolase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rppH PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 9.645e-26 Identity = 63/158 (39.87%), Postives = 88/158 (55.70%), Query Frame = 3 Query: 201 YRRNVGICLINSSKKIFAASRL--------DIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLG-DKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647 YR+ VGI + N +++ RL ++ WQ PQGGIDE E+P AA REL EETG+ S ++ EV W YDFP E+ + H ++GQ QKWF +F G+ EI + + S K EF +WKW++ E + V FK+ VY +V F Sbjct: 12 YRKGVGIVVFNREGQVWIGRRLITSSHTYAEVSKLWQFPQGGIDEGEEPLDAARRELYEETGMRSVNLIKEVQDWFCYDFPQEL---IGHVLNNQYRGQMQKWFAFQFIGETSEIVINSPENSNKAEFDQWKWINLEVLPSIVVSFKRHVYMKVVHEF 166
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_RUTMC (RNA pyrophosphohydrolase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=rppH PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.260e-25 Identity = 65/157 (41.40%), Postives = 87/157 (55.41%), Query Frame = 3 Query: 195 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVS--SAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 659 EGYR NVGI + N +++ A RL DSWQ+PQGGID E A REL EE G+S +LA+ P WL YDFP +KH+ GQ Q WFLL+ E I L + + EF +W W+ + +E +DFKKP+Y+++ P L Sbjct: 5 EGYRANVGIVITNDKQQVLLAKRLK-QDSWQLPQGGIDFGESELDALFRELNEEIGLSFEHISILAKTPKWLRYDFPD---YHIKHKQKPVCIGQKQVWFLLRLISNENNIKL--NMHTQVEFDDWAWVDYWRPIEDVIDFKKPIYEDMLKALAPVL 155
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_PSEHT (RNA pyrophosphohydrolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rppH PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.149e-25 Identity = 62/155 (40.00%), Postives = 88/155 (56.77%), Query Frame = 3 Query: 195 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGV--SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTP 653 EG+R NVGI + N+ ++F A R SWQ PQGG+D+ E P+ REL EE G+ E++A +WL Y P + ++ GQ QKWFLLK K+E++NLL K+ PEF +W+W+S + + V FK+ VY+ V F P Sbjct: 5 EGFRANVGIVICNNQGQVFWARRYG-QHSWQFPQGGVDDGETPEQTMYRELHEEVGLRPEDVEIVASSKHWLRYKLP---KRLIRRDSSPVCIGQKQKWFLLKLRCKDEDVNLL--KTHHPEFDDWRWVSYWYPVRQVVSFKRDVYRRVMKEFAP 153
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_OCHA4 (RNA pyrophosphohydrolase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rppH PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.149e-25 Identity = 65/159 (40.88%), Postives = 88/159 (55.35%), Query Frame = 3 Query: 201 YRRNVGICLINSSKKIFAASRLDIPDS--------WQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPE-VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDK-SEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647 YR VG+ ++N + ++A R+ IP WQMPQGGID+ E+P AA+REL EETG+ S +L E W+ YD PP V + LK G ++GQ QKWF +F G E EI + EF W+W ++ E V FK+ VY+EV F Sbjct: 15 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEEPLEAAIRELYEETGMKSVSLLEEASDWINYDLPPHLVGQALK----GKYRGQTQKWFAYRFEGDESEIAINPPPGGHTAEFDRWEWKPMVKLPELIVPFKRKVYEEVVAAF 169
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_NITMU (RNA pyrophosphohydrolase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rppH PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.149e-25 Identity = 61/150 (40.67%), Postives = 86/150 (57.33%), Query Frame = 3 Query: 198 GYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVS--SAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFT 641 GYR NVGI L+NS ++F R+ DSWQ PQGGI E P+ A REL EE G+ ++L WL YD P + +K W G+++GQ Q W+LL+ G + +++L S +PEF W+W LE V+FK+ VY++ T Sbjct: 6 GYRSNVGIILLNSKNEVFWGKRIR-QDSWQFPQGGIKPGESPEQAMYRELTEEVGLRPWHVQILGRTRDWLRYDVP---AQWIKRDWRGNYRGQKQIWYLLRLLGSDCDVSL--HTSGRPEFDAWRWNQYWVELESVVEFKRQVYRQALT 149
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_BARCL (RNA pyrophosphohydrolase OS=Bartonella clarridgeiae GN=rppH PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.149e-25 Identity = 63/158 (39.87%), Postives = 87/158 (55.06%), Query Frame = 3 Query: 201 YRRNVGICLINSSKKIFAASRL--------DIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINL-LGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647 YR+ VGI + N K++ RL D+ WQ+PQGGI++ E P AA REL EETG+ S +++ E W YDFP E+ + H ++GQ QKWF +FTG+ EI + K EF +WKW+ E++ V FKK VY +V F Sbjct: 12 YRKCVGILVFNYEGKVWVGRRLMTVSHANVDMSKLWQLPQGGINQGEKPIDAARRELYEETGIQSVKLIKEAQDWFEYDFPQEL---MGHVLNNKYRGQTQKWFSFQFTGEISEITINPPPDGNKAEFDQWKWVDLEELPSIVVSFKKHVYTQVVKEF 166
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_RHIME (RNA pyrophosphohydrolase OS=Rhizobium meliloti GN=rppH PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.806e-25 Identity = 64/166 (38.55%), Postives = 88/166 (53.01%), Query Frame = 3 Query: 180 MDAPPEGYRRNVGICLINSSKKIFAASRLDI--------PDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDK-SEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 650 M A YR VG+ ++N ++A RL + P WQMPQGGIDE EDP AA REL EETG+ S +LAE P W+ YD P + + G ++GQ Q+W+ +F G E EI + +PEF W+W ++ V FK+ Y+EV F+ Sbjct: 1 MTAEDLPYRPCVGVMVLNRQGLVWAGHRLAVGNSEYDGSPQLWQMPQGGIDEGEDPLEAACRELYEETGIRSVSLLAEAPDWIHYDLPSHL---IGIGLKGKYRGQRQRWYAFRFEGDESEIAINPPPGGHEPEFDAWEWKPMHELPGSIVPFKRRAYEEVVAAFS 163
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_BARQU (RNA pyrophosphohydrolase OS=Bartonella quintana GN=rppH PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 4.787e-25 Identity = 65/159 (40.88%), Postives = 91/159 (57.23%), Query Frame = 3 Query: 201 YRRNVGICLINSSKKIFAASRL--------DIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPE-VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSE-KPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647 YRR VG+ + N K++ RL ++ WQ+PQGGIDE E+P AA REL EETG+ S +++ E W YDFP + V LK++ ++GQ QKWF +FTGK EI + K EF +WKW+ E + + FKK VY++V + F Sbjct: 12 YRRCVGVVVFNHEGKVWVGRRLTKYAHADTEMSHRWQLPQGGIDEGEEPLDAACRELYEETGIRSIKLIKEARDWFYYDFPQKLVGCTLKNK----YRGQIQKWFAFQFTGKLSEIATNPPPDDNKAEFDQWKWVDLEALPSIVISFKKHVYRKVVSEF 166 The following BLAST results are available for this feature:
BLAST of CK935896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 325
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935896 ID=CK935896; Name=CK935896; organism=Citrus sinensis; type=EST; length=841bpback to top |