CK935896

Overview
NameCK935896
Unique NameCK935896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_RHOPB (RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain BisB18) GN=rppH PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.916e-27
Identity = 68/174 (39.08%), Postives = 94/174 (54.02%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASRL------DIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLG-DKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ*YYVGIVRDSAKL 701
            YR  VG+ L+N+   +F   RL      D    WQMPQGG+D  EDP  AA REL EET V S E L E+  WL YD P  V  +    W G ++GQ QKW+ ++FTG + EI+++      K EF  W+W   + + +  V FK+PVY+ V   F          + +D+AK+
Sbjct:    9 YRTCVGMMLLNAEGLVFIGRRLGGIEHVDETHVWQMPQGGVDPGEDPWTAAKRELYEETSVRSVEKLGEIADWLIYDIPRTVAGR---SWKGRYRGQRQKWYAVRFTGDDSEIDVVSPGGGHKAEFISWRWEPMQNLPDLIVPFKRPVYERVVKEF--------AALAKDAAKV 171          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_THICR (RNA pyrophosphohydrolase OS=Thiomicrospira crunogena (strain XCL-2) GN=rppH PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.385e-26
Identity = 66/161 (40.99%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  195 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGV--SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ*YY 671
            +GYR NVGI ++N   K+F   RL   D+WQ PQGG+ ENE P+ A  RELKEE G+  S   VL     WLTYD P   +  ++H       GQ Q WFLL     +E+INL  +  E PEF  W W+     ++  V+FK+ VY +  T    HL  ++
Sbjct:    5 DGYRPNVGIIIVNKEGKLFWGKRL-YQDAWQFPQGGVRENETPQQAVFRELKEEVGLEPSDVRVLGRTKDWLTYDLP---KHLIRHYSQPVCIGQKQIWFLLGMLSDDEKINL--NTHETPEFEGWSWVDYWVPVQNVVEFKQSVYHQALTELETHLHKFW 159          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_BARBK (RNA pyrophosphohydrolase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rppH PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.645e-26
Identity = 63/158 (39.87%), Postives = 88/158 (55.70%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASRL--------DIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLG-DKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647
            YR+ VGI + N   +++   RL        ++   WQ PQGGIDE E+P  AA REL EETG+ S  ++ EV  W  YDFP E+   + H     ++GQ QKWF  +F G+  EI +   + S K EF +WKW++ E +    V FK+ VY +V   F
Sbjct:   12 YRKGVGIVVFNREGQVWIGRRLITSSHTYAEVSKLWQFPQGGIDEGEEPLDAARRELYEETGMRSVNLIKEVQDWFCYDFPQEL---IGHVLNNQYRGQMQKWFAFQFIGETSEIVINSPENSNKAEFDQWKWINLEVLPSIVVSFKRHVYMKVVHEF 166          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_RUTMC (RNA pyrophosphohydrolase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=rppH PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.260e-25
Identity = 65/157 (41.40%), Postives = 87/157 (55.41%), Query Frame = 3
Query:  195 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVS--SAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 659
            EGYR NVGI + N  +++  A RL   DSWQ+PQGGID  E    A  REL EE G+S     +LA+ P WL YDFP      +KH+      GQ Q WFLL+    E  I L  +   + EF +W W+   + +E  +DFKKP+Y+++     P L
Sbjct:    5 EGYRANVGIVITNDKQQVLLAKRLK-QDSWQLPQGGIDFGESELDALFRELNEEIGLSFEHISILAKTPKWLRYDFPD---YHIKHKQKPVCIGQKQVWFLLRLISNENNIKL--NMHTQVEFDDWAWVDYWRPIEDVIDFKKPIYEDMLKALAPVL 155          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_PSEHT (RNA pyrophosphohydrolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rppH PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.149e-25
Identity = 62/155 (40.00%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  195 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGV--SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTP 653
            EG+R NVGI + N+  ++F A R     SWQ PQGG+D+ E P+    REL EE G+     E++A   +WL Y  P   +  ++        GQ QKWFLLK   K+E++NLL  K+  PEF +W+W+S    + + V FK+ VY+ V   F P
Sbjct:    5 EGFRANVGIVICNNQGQVFWARRYG-QHSWQFPQGGVDDGETPEQTMYRELHEEVGLRPEDVEIVASSKHWLRYKLP---KRLIRRDSSPVCIGQKQKWFLLKLRCKDEDVNLL--KTHHPEFDDWRWVSYWYPVRQVVSFKRDVYRRVMKEFAP 153          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_OCHA4 (RNA pyrophosphohydrolase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rppH PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.149e-25
Identity = 65/159 (40.88%), Postives = 88/159 (55.35%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASRLDIPDS--------WQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPE-VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDK-SEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647
            YR  VG+ ++N +  ++A  R+ IP          WQMPQGGID+ E+P  AA+REL EETG+ S  +L E   W+ YD PP  V + LK    G ++GQ QKWF  +F G E EI +         EF  W+W    ++ E  V FK+ VY+EV   F
Sbjct:   15 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEEPLEAAIRELYEETGMKSVSLLEEASDWINYDLPPHLVGQALK----GKYRGQTQKWFAYRFEGDESEIAINPPPGGHTAEFDRWEWKPMVKLPELIVPFKRKVYEEVVAAF 169          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_NITMU (RNA pyrophosphohydrolase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rppH PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.149e-25
Identity = 61/150 (40.67%), Postives = 86/150 (57.33%), Query Frame = 3
Query:  198 GYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVS--SAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFT 641
            GYR NVGI L+NS  ++F   R+   DSWQ PQGGI   E P+ A  REL EE G+     ++L     WL YD P    + +K  W G+++GQ Q W+LL+  G + +++L    S +PEF  W+W      LE  V+FK+ VY++  T
Sbjct:    6 GYRSNVGIILLNSKNEVFWGKRIR-QDSWQFPQGGIKPGESPEQAMYRELTEEVGLRPWHVQILGRTRDWLRYDVP---AQWIKRDWRGNYRGQKQIWYLLRLLGSDCDVSL--HTSGRPEFDAWRWNQYWVELESVVEFKRQVYRQALT 149          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_BARCL (RNA pyrophosphohydrolase OS=Bartonella clarridgeiae GN=rppH PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.149e-25
Identity = 63/158 (39.87%), Postives = 87/158 (55.06%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASRL--------DIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINL-LGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647
            YR+ VGI + N   K++   RL        D+   WQ+PQGGI++ E P  AA REL EETG+ S +++ E   W  YDFP E+   + H     ++GQ QKWF  +FTG+  EI +       K EF +WKW+  E++    V FKK VY +V   F
Sbjct:   12 YRKCVGILVFNYEGKVWVGRRLMTVSHANVDMSKLWQLPQGGINQGEKPIDAARRELYEETGIQSVKLIKEAQDWFEYDFPQEL---MGHVLNNKYRGQTQKWFSFQFTGEISEITINPPPDGNKAEFDQWKWVDLEELPSIVVSFKKHVYTQVVKEF 166          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_RHIME (RNA pyrophosphohydrolase OS=Rhizobium meliloti GN=rppH PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.806e-25
Identity = 64/166 (38.55%), Postives = 88/166 (53.01%), Query Frame = 3
Query:  180 MDAPPEGYRRNVGICLINSSKKIFAASRLDI--------PDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDK-SEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 650
            M A    YR  VG+ ++N    ++A  RL +        P  WQMPQGGIDE EDP  AA REL EETG+ S  +LAE P W+ YD P  +   +     G ++GQ Q+W+  +F G E EI +       +PEF  W+W    ++    V FK+  Y+EV   F+
Sbjct:    1 MTAEDLPYRPCVGVMVLNRQGLVWAGHRLAVGNSEYDGSPQLWQMPQGGIDEGEDPLEAACRELYEETGIRSVSLLAEAPDWIHYDLPSHL---IGIGLKGKYRGQRQRWYAFRFEGDESEIAINPPPGGHEPEFDAWEWKPMHELPGSIVPFKRRAYEEVVAAFS 163          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_BARQU (RNA pyrophosphohydrolase OS=Bartonella quintana GN=rppH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.787e-25
Identity = 65/159 (40.88%), Postives = 91/159 (57.23%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASRL--------DIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPE-VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSE-KPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647
            YRR VG+ + N   K++   RL        ++   WQ+PQGGIDE E+P  AA REL EETG+ S +++ E   W  YDFP + V   LK++    ++GQ QKWF  +FTGK  EI       + K EF +WKW+  E +    + FKK VY++V + F
Sbjct:   12 YRRCVGVVVFNHEGKVWVGRRLTKYAHADTEMSHRWQLPQGGIDEGEEPLDAACRELYEETGIRSIKLIKEARDWFYYDFPQKLVGCTLKNK----YRGQIQKWFAFQFTGKLSEIATNPPPDDNKAEFDQWKWVDLEALPSIVISFKKHVYRKVVSEF 166          
The following BLAST results are available for this feature:
BLAST of CK935896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 325
Match NameE-valueIdentityDescription
RPPH_RHOPB3.916e-2739.08RNA pyrophosphohydrolase OS=Rhodopseudomonas palus... [more]
RPPH_THICR7.385e-2640.99RNA pyrophosphohydrolase OS=Thiomicrospira crunoge... [more]
RPPH_BARBK9.645e-2639.87RNA pyrophosphohydrolase OS=Bartonella bacilliform... [more]
RPPH_RUTMC1.260e-2541.40RNA pyrophosphohydrolase OS=Ruthia magnifica subsp... [more]
RPPH_PSEHT2.149e-2540.00RNA pyrophosphohydrolase OS=Pseudoalteromonas halo... [more]
RPPH_OCHA42.149e-2540.88RNA pyrophosphohydrolase OS=Ochrobactrum anthropi ... [more]
RPPH_NITMU2.149e-2540.67RNA pyrophosphohydrolase OS=Nitrosospira multiform... [more]
RPPH_BARCL2.149e-2539.87RNA pyrophosphohydrolase OS=Bartonella clarridgeia... [more]
RPPH_RHIME2.806e-2538.55RNA pyrophosphohydrolase OS=Rhizobium meliloti GN=... [more]
RPPH_BARQU4.787e-2540.88RNA pyrophosphohydrolase OS=Bartonella quintana GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_C10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935896 ID=CK935896; Name=CK935896; organism=Citrus sinensis; type=EST; length=841bp
GGGGAATGGCTTTATGTTTAAGCCGATCTTTCTCCTCGTATTCCCAGCTT
CATCTTTCTTCTCTCCTCAGTCGCTGCAAGCCTAATTTCACATCCCCAAA
TTACCCTCATAAACTCCCCAAATCTACTAACCTGCCACTCGTTCATCATC
AGAATCAAATTTGCTCATCATCATACTCCATGGACGCTCCTCCAGAAGGT
TACCGAAGAAATGTCGGCATCTGTCTCATCAATTCTTCCAAAAAGATTTT
CGCCGCTTCGAGACTTGACATACCTGATAGTTGGCAAATGCCACAGGGCG
GTATTGACGAGAATGAGGATCCCAAAGTTGCTGCCTTAAGGGAATTGAAA
GAAGAAACAGGAGTCAGCTCGGCAGAAGTTCTTGCAGAGGTGCCTTATTG
GTTGACATATGACTTCCCTCCAGAAGTCAGGGAAAAACTTAAACATCAAT
GGGGAGGTGACTGGAAAGGTCAAGCACAGAAGTGGTTTCTCCTCAAGTTC
ACTGGCAAGGAGGAAGAAATCAATCTTCTTGGTGATAAATCTGAGAAACC
TGAGTTTGGCGAGTGGAAGTGGATGTCACCAGAACAAATACTTGAGCGTG
CTGTGGATTTCAAGAAACCTGTTTACAAAGAAGTTTTTACGGTTTTCACA
CCTCATCTTCAATAATATTATGTTGGAATTGTCCGAGATTCTGCAAAACT
GGGTGATAAATTGATTTGTTGAGTCACTAACTTTTCAAAGTCTTTATTGG
ATATCACATACATATCAACTGCCTTGTAATGATATGATATGATATTCTTG
TGATCGATGAAAGAAATAAAATTAAATAACCTTATTAGCAA
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