CK936034 | Citrus Genome Database

Overview


Name	CK936034
Unique Name	CK936034
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	672

Libraries


Library Name	Type
Developing fruit 24 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 1.702e-85
Identity = 126/135 (93.33%), Postives = 128/135 (94.81%), Query Frame = 2

Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN QGLIFVVDSNDRDRV EAR+EL RML EDELRDAVLLVFANK DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN I N+
Sbjct:   46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQ 180

HSP 2 Score: 77.411 bits (189), Expect = 1.702e-85
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1

Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MGL+ +KLFSRLFAKKEMRILMVGLDA GKTTILYKLKLGEIV
Sbjct:    1 MGLTISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV 43

[Close]

BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 1.564e-80
Identity = 120/135 (88.89%), Postives = 127/135 (94.07%), Query Frame = 2

Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN QGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NK DLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180

HSP 2 Score: 69.707 bits (169), Expect = 1.564e-80
Identity = 36/43 (83.72%), Postives = 36/43 (83.72%), Query Frame = 1

Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG  F KLF  LF KKEMRILMVGLDA GKTTILYKLKLGEIV
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV 43

[Close]

BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 1.564e-80
Identity = 120/135 (88.89%), Postives = 127/135 (94.07%), Query Frame = 2

Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN QGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NK DLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180

HSP 2 Score: 69.707 bits (169), Expect = 1.564e-80
Identity = 36/43 (83.72%), Postives = 36/43 (83.72%), Query Frame = 1

Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG  F KLF  LF KKEMRILMVGLDA GKTTILYKLKLGEIV
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV 43

[Close]

BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 1.564e-80
Identity = 120/135 (88.89%), Postives = 127/135 (94.07%), Query Frame = 2

Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN QGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NK DLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180

HSP 2 Score: 69.707 bits (169), Expect = 1.564e-80
Identity = 36/43 (83.72%), Postives = 36/43 (83.72%), Query Frame = 1

Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG  F KLF  LF KKEMRILMVGLDA GKTTILYKLKLGEIV
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV 43

[Close]

BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 3.470e-80
Identity = 115/135 (85.19%), Postives = 126/135 (93.33%), Query Frame = 2

Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVETVEY+NISFTVWDVGGQDKIRPLWRHYFQN QG+IFVVDSNDR+R+ EA +EL RMLNEDELRDA+LLVFANK DLPNAMNAAEITDKLGLHSLR R WYIQ+TCATSG+GLYEGL+WLS N+ N+
Sbjct:   46 IPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180

HSP 2 Score: 72.0182 bits (175), Expect = 3.470e-80
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1

Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MGLS +KLF  LF K+EMRILMVGLDA GKTTILYKLKLGEIV
Sbjct:    1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIV 43

[Close]

BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 5.904e-80
Identity = 120/135 (88.89%), Postives = 127/135 (94.07%), Query Frame = 2

Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN QGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANK DLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180

HSP 2 Score: 68.1662 bits (165), Expect = 5.904e-80
Identity = 35/43 (81.40%), Postives = 35/43 (81.40%), Query Frame = 1

Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG  F  LF  LF KKEMRILMVGLDA GKTTILYKLKLGEIV
Sbjct:    1 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV 43

[Close]

BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 248.44 bits (633), Expect = 7.699e-80
Identity = 116/136 (85.29%), Postives = 127/136 (93.38%), Query Frame = 2

Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 547
            IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN QG+IFVVDSNDR+R+ EAR+EL RML+EDELRDA+LLVFANK DLPNAMNAAEITDKLGLHSLRQR WYIQ+ CATSG+GLYEGL+WLS N+  K+
Sbjct:   46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLKRKS 181

HSP 2 Score: 70.4774 bits (171), Expect = 7.699e-80
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1

Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MGLS +KL + LF KKEMRILMVGLDA GKTTILYKLKLGEIV
Sbjct:    1 MGLSVSKLLNGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV 43

[Close]

BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 7.701e-80
Identity = 120/135 (88.89%), Postives = 127/135 (94.07%), Query Frame = 2

Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN QGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANK DLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180

HSP 2 Score: 67.781 bits (164), Expect = 7.701e-80
Identity = 35/43 (81.40%), Postives = 35/43 (81.40%), Query Frame = 1

Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG  F  LF  LF KKEMRILMVGLDA GKTTILYKLKLGEIV
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV 43

[Close]

BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 7.701e-80
Identity = 120/135 (88.89%), Postives = 127/135 (94.07%), Query Frame = 2

Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN QGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANK DLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180

HSP 2 Score: 67.781 bits (164), Expect = 7.701e-80
Identity = 35/43 (81.40%), Postives = 35/43 (81.40%), Query Frame = 1

Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG  F  LF  LF KKEMRILMVGLDA GKTTILYKLKLGEIV
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV 43

[Close]

BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 251.136 bits (640), Expect = 7.701e-80
Identity = 120/135 (88.89%), Postives = 127/135 (94.07%), Query Frame = 2

Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN QGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANK DLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180

HSP 2 Score: 67.781 bits (164), Expect = 7.701e-80
Identity = 35/43 (81.40%), Postives = 35/43 (81.40%), Query Frame = 1

Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG  F  LF  LF KKEMRILMVGLDA GKTTILYKLKLGEIV
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV 43

The following BLAST results are available for this feature:

BLAST of CK936034 vs. ExPASy Swiss-Prot

BLAST of CK936034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215


Match Name	E-value	Identity	Description
ARF1_SOLTU	1.702e-85	93.33	ADP-ribosylation factor 1 OS=Solanum tuberosum PE=...	[more]
ARF2_RAT	1.564e-80	88.89	ADP-ribosylation factor 2 OS=Rattus norvegicus GN=...	[more]
ARF2_MOUSE	1.564e-80	88.89	ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ...	[more]
ARF2_BOVIN	1.564e-80	88.89	ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE...	[more]
ARF1_SCHPO	3.470e-80	85.19	ADP-ribosylation factor 1 OS=Schizosaccharomyces p...	[more]
ARF1_XENLA	5.904e-80	88.89	ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf...	[more]
ARF_CRYNE	7.699e-80	85.29	ADP-ribosylation factor OS=Cryptococcus neoformans...	[more]
ARF1_RAT	7.701e-80	88.89	ADP-ribosylation factor 1 OS=Rattus norvegicus GN=...	[more]
ARF1_MOUSE	7.701e-80	88.89	ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ...	[more]
ARF1_MACFA	7.701e-80	88.89	ADP-ribosylation factor 1 OS=Macaca fascicularis G...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004387_G04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IF_G04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK936034 ID=CK936034; Name=CK936034; organism=Citrus sinensis; type=EST; length=672bp
AAAATGGGGCTGTCTTTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAA
AGAGATGAGAATTCTCATGGTAGGTCTCGATGCACCTGGTAAGACTACTA
TCCTGTACAAGCTTAAGCTCGGAGAGATCGTCNNACACCATTCCTACCAT
TGGATTTAATGTAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCT
GGGATGTTGGGGGTCAAGACAAGATCCGACCTTTGTGGAGACATTATTTC
CAAAACGCCCAAGGACTCATCTTTGTGGTTGACAGTAATGATCGCGACCG
TGTGGTAGAAGCTAGGGATGAGTTGCACAGAATGTTGAATGAGGATGAAT
TGAGAGATGCTGTGCTGCTTGTATTTGCTAACAAGCACGATCTTCCAAAT
GCAATGAATGCTGCTGAGATAACTGACAAGCTTGGCCTTCACTCTCTTCG
CCAGCGCCACTGGTATATCCAGAGCACATGTGCCACTTCTGGTGAAGGGC
TGTATGAGGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGCATAG
ACAACTAAATTTTGAGTTTTGGGTTGCCGCAACTGCTGAAATACAGAGTT
AACAACACATCTCAAGTGTTCTTGCTTTCCTTCCTGTAATAGCTTCGTTG
CCCGTTTTACTGTGTTTGTTGT