CK936034

Overview
NameCK936034
Unique NameCK936034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL4A_BOVIN (ADP-ribosylation factor-like protein 4A OS=Bos taurus GN=ARL4A PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.194e-29
Identity = 58/141 (41.13%), Postives = 88/141 (62.41%), Query Frame = 2
Query:  140 IPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            +PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y +   G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANK DL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+ L + I  +
Sbjct:   49 VPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          

HSP 2 Score: 36.1946 bits (82), Expect = 1.194e-29
Identity = 16/38 (42.11%), Postives = 25/38 (65.79%), Query Frame = 1
Query:   19 TKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            T + S L + +   I+++GLD  GKTT+LY+L+  E V
Sbjct:    9 TSILSSLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFV 46          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL5C_HUMAN (Putative ADP-ribosylation factor-like protein 5C OS=Homo sapiens GN=ARL5C PE=2 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 1.560e-29
Identity = 51/132 (38.64%), Postives = 81/132 (61.36%), Query Frame = 2
Query:  143 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 538
            PTIG NVE +      F +WD+   + +  +W  Y+ N + +I V+DS DRDR++  R+EL++ML  + L+DA +L+FANK D+ ++M   EI+  L L +++   W+IQ  CA + EGL   L W+ +  A
Sbjct:   46 PTIGSNVEEIILPKTHFFMWDIVRPEALSFIWNTYYSNTEFIILVIDSTDRDRLLTTREELYKMLAHEALQDASVLIFANKQDVKDSMRMVEISHFLTLSTIKDHSWHIQGCCALTREGLPARLQWMESQAA 177          

HSP 2 Score: 38.891 bits (89), Expect = 1.560e-29
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG    KL S +F  +E  +++VGLD  GKTTILY+    E+V
Sbjct:    1 MGQLIAKLMS-IFGNQEHTVIIVGLDNEGKTTILYRFLTNEVV 42          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL6_CAEBR (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis briggsae GN=arl-6 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.062e-27
Identity = 58/142 (40.85%), Postives = 86/142 (60.56%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*TTK 559
            +PT+G  V     +N+SF  +D+ GQ K R  W  YF ++QG+IFV+DS+DR R+   +DEL  +L+  ++  R   +++ ANK D+P AM  A+IT  LGL+  R   W I STCA +G+GL + +  LS+ I     T K
Sbjct:   48 VPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRVRMELLKDELWLVLDHKDVASRGIPVVILANKMDIPGAMTCADITAALGLNLHRSGTWSIHSTCALTGDGLDKAMQQLSSEIQKYLETRK 189          

HSP 2 Score: 35.8094 bits (81), Expect = 1.062e-27
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 1
Query:   10 LSFTKLFSRLFA--KKEMRILMVGLDAPGKTTILYKLKLGE 126
            + F    S LF   KK++ I++VGLD  GKTTIL +LK  E
Sbjct:    1 MGFLSSLSNLFGMGKKDVNIVVVGLDNSGKTTILNQLKTPE 41          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL4D_MOUSE (ADP-ribosylation factor-like protein 4D OS=Mus musculus GN=Arl4d PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.339e-27
Identity = 58/141 (41.13%), Postives = 85/141 (60.28%), Query Frame = 2
Query:  140 IPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIANK 544
            +PT GFN E +       + I+F VWDVGGQ+K+RPLWR Y +   GL+FVVDS + +R+ EA+ ELHR+    + +   +LV ANK D P A++AAE+  +L +  L      ++Q+  A  G GL +GL+ L   I  +
Sbjct:   50 VPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDSAEIERLEEAKVELHRISKASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQACSAVDGLGLQQGLERLYEMILKR 190          

HSP 2 Score: 33.113 bits (74), Expect = 2.339e-27
Identity = 12/26 (46.15%), Postives = 21/26 (80.77%), Query Frame = 1
Query:   55 MRILMVGLDAPGKTTILYKLKLGEIV 132
            + ++++GLD+ GKT++LY+LK  E V
Sbjct:   22 LHVVVIGLDSAGKTSLLYRLKFKEFV 47          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL_SCHPO (ADP-ribosylation factor-like protein alp41 OS=Schizosaccharomyces pombe GN=alp41 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.345e-27
Identity = 49/131 (37.40%), Postives = 83/131 (63.36%), Query Frame = 2
Query:  143 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 535
            PT GF + T+E + + FT+WD+GGQ  +R  W++YF++ + +I+VVDS D  R+ E R+ L  +L E++L    +LV ANK D+  A+++ EI+  L +   +  HW I S  A +G  + + + WL+N++
Sbjct:   46 PTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDL 176          

HSP 2 Score: 31.5722 bits (70), Expect = 2.345e-27
Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTIL 105
            MGL  T L  +   ++E+R+L++GLD  GKTTIL
Sbjct:    1 MGL-LTILRQQKLKEREVRVLLLGLDNAGKTTIL 33          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL4D_PONAB (ADP-ribosylation factor-like protein 4D OS=Pongo abelii GN=ARL4D PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.965e-27
Identity = 57/141 (40.43%), Postives = 84/141 (59.57%), Query Frame = 2
Query:  140 IPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIANK 544
            +PT GFN E +       + I+F VWDVGGQ+K+RPLWR Y +   GL+FVVD+ + +R+ EA+ ELHR+    + +   +LV ANK D P A++AAE+  +L +  L      ++Q   A  G GL +GL+ L   I  +
Sbjct:   50 VPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGLERLYEMILKR 190          

HSP 2 Score: 33.113 bits (74), Expect = 3.965e-27
Identity = 12/26 (46.15%), Postives = 21/26 (80.77%), Query Frame = 1
Query:   55 MRILMVGLDAPGKTTILYKLKLGEIV 132
            + ++++GLD+ GKT++LY+LK  E V
Sbjct:   22 LHVVVIGLDSAGKTSLLYRLKFKEFV 47          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL4D_HUMAN (ADP-ribosylation factor-like protein 4D OS=Homo sapiens GN=ARL4D PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.965e-27
Identity = 57/141 (40.43%), Postives = 84/141 (59.57%), Query Frame = 2
Query:  140 IPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIANK 544
            +PT GFN E +       + I+F VWDVGGQ+K+RPLWR Y +   GL+FVVD+ + +R+ EA+ ELHR+    + +   +LV ANK D P A++AAE+  +L +  L      ++Q   A  G GL +GL+ L   I  +
Sbjct:   50 VPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGLERLYEMILKR 190          

HSP 2 Score: 33.113 bits (74), Expect = 3.965e-27
Identity = 12/26 (46.15%), Postives = 21/26 (80.77%), Query Frame = 1
Query:   55 MRILMVGLDAPGKTTILYKLKLGEIV 132
            + ++++GLD+ GKT++LY+LK  E V
Sbjct:   22 LHVVVIGLDSAGKTSLLYRLKFKEFV 47          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL6_CAEEL (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis elegans GN=arl-6 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.171e-27
Identity = 55/134 (41.04%), Postives = 83/134 (61.94%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 535
            +PT+G  V     +N+SF  +D+ GQ K R  W  YF ++QG+IFV+DS+DR R+   +DEL  ++   ++  R   +++ ANK D+P AM A++IT  LGL+  R   W I STCA +G+GL + +  LS  I
Sbjct:   48 VPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRLRMELLKDELMMVMEHKDVVSRGIPIVILANKMDIPGAMTASDITVALGLNLYRSGTWSIHSTCALTGDGLDKAMQQLSAEI 181          

HSP 2 Score: 35.039 bits (79), Expect = 5.171e-27
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 1
Query:   10 LSFTKLFSRLFA--KKEMRILMVGLDAPGKTTILYKLKLGE 126
            + F    S LF   KK++ I++VGLD  GKTTIL +LK  E
Sbjct:    1 MGFFSSLSSLFGLGKKDVNIVVVGLDNSGKTTILNQLKTPE 41          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL4D_BOVIN (ADP-ribosylation factor-like protein 4D OS=Bos taurus GN=ARL4D PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.719e-27
Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 2
Query:  140 IPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPT GFN E +       + I+F VWDVGGQ+K+RPLWR Y +   GL+FVVD+ + +R+ EA+ ELHR+    + +   +LV ANK D P A++AAE+  +L +  L      ++Q   A  G GL  GL+ L   I  +
Sbjct:   49 IPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELATATLTHVQGCSAVDGLGLQPGLERLYEMILKR 189          

HSP 2 Score: 33.113 bits (74), Expect = 6.719e-27
Identity = 12/26 (46.15%), Postives = 21/26 (80.77%), Query Frame = 1
Query:   55 MRILMVGLDAPGKTTILYKLKLGEIV 132
            + ++++GLD+ GKT++LY+LK  E V
Sbjct:   21 LHVVVIGLDSAGKTSLLYRLKFKEFV 46          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL11_MOUSE (ADP-ribosylation factor-like protein 11 OS=Mus musculus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 8.781e-27
Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = 2
Query:  140 IPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 523
            +PT+GFNVE +E   ++S T+WD+GGQ ++R  W+ Y +    L++V+DS D  R+ EA  EL  +L +  +     LV ANK + P A+   EI ++LGL   ++  W +++  A +G+GL E L  L
Sbjct:   41 LPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELKEVLEDPNMAGVPFLVLANKQEAPGALPLLEIRNRLGLEGFQKHCWELRACSALTGQGLQEALQSL 169          

HSP 2 Score: 38.891 bits (89), Expect = 8.781e-27
Identity = 17/29 (58.62%), Postives = 24/29 (82.76%), Query Frame = 1
Query:   46 KKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            K E +++M+GLD+ GKTTILYKLK  ++V
Sbjct:   10 KAEAQVVMMGLDSAGKTTILYKLKGNQLV 38          
The following BLAST results are available for this feature:
BLAST of CK936034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
ARL4A_BOVIN1.194e-2941.13ADP-ribosylation factor-like protein 4A OS=Bos tau... [more]
ARL5C_HUMAN1.560e-2938.64Putative ADP-ribosylation factor-like protein 5C O... [more]
ARL6_CAEBR1.062e-2740.85ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
ARL4D_MOUSE2.339e-2741.13ADP-ribosylation factor-like protein 4D OS=Mus mus... [more]
ARL_SCHPO2.345e-2737.40ADP-ribosylation factor-like protein alp41 OS=Schi... [more]
ARL4D_PONAB3.965e-2740.43ADP-ribosylation factor-like protein 4D OS=Pongo a... [more]
ARL4D_HUMAN3.965e-2740.43ADP-ribosylation factor-like protein 4D OS=Homo sa... [more]
ARL6_CAEEL5.171e-2741.04ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
ARL4D_BOVIN6.719e-2741.13ADP-ribosylation factor-like protein 4D OS=Bos tau... [more]
ARL11_MOUSE8.781e-2737.98ADP-ribosylation factor-like protein 11 OS=Mus mus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004387_G04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936034 ID=CK936034; Name=CK936034; organism=Citrus sinensis; type=EST; length=672bp
AAAATGGGGCTGTCTTTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAA
AGAGATGAGAATTCTCATGGTAGGTCTCGATGCACCTGGTAAGACTACTA
TCCTGTACAAGCTTAAGCTCGGAGAGATCGTCNNACACCATTCCTACCAT
TGGATTTAATGTAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCT
GGGATGTTGGGGGTCAAGACAAGATCCGACCTTTGTGGAGACATTATTTC
CAAAACGCCCAAGGACTCATCTTTGTGGTTGACAGTAATGATCGCGACCG
TGTGGTAGAAGCTAGGGATGAGTTGCACAGAATGTTGAATGAGGATGAAT
TGAGAGATGCTGTGCTGCTTGTATTTGCTAACAAGCACGATCTTCCAAAT
GCAATGAATGCTGCTGAGATAACTGACAAGCTTGGCCTTCACTCTCTTCG
CCAGCGCCACTGGTATATCCAGAGCACATGTGCCACTTCTGGTGAAGGGC
TGTATGAGGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGCATAG
ACAACTAAATTTTGAGTTTTGGGTTGCCGCAACTGCTGAAATACAGAGTT
AACAACACATCTCAAGTGTTCTTGCTTTCCTTCCTGTAATAGCTTCGTTG
CCCGTTTTACTGTGTTTGTTGT
back to top