CK936034

Overview
NameCK936034
Unique NameCK936034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 4.130e-72
Identity = 99/134 (73.88%), Postives = 124/134 (92.54%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 541
            IPTIGFNVETVE++NISFTVWDVGGQDKIRPLWRHY+ N  GLIFVVDSNDR+R+ +AR+ELHRM+NE+EL+DA++LVFANK DLPNAM+AAE+T+KL L+++R+R+W+IQSTCAT G+GLYEG DWL+ ++ N
Sbjct:   46 IPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNN 179          

HSP 2 Score: 67.3958 bits (163), Expect = 4.130e-72
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MGL  ++LF+RLF KK++RILMVGLDA GKTTILYK+KLGE+V
Sbjct:    1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVV 43          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 9.161e-72
Identity = 103/134 (76.87%), Postives = 121/134 (90.30%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 541
            IPTIGFNVETV+YKNISFTVWDVGGQD+IR LWRHY++N +G+IFVVDSNDR R+ EAR+ + RMLNEDELR+A  LVFANK DLP AM+AAEIT+KLGLHS+R R W+IQ+TCATSGEGLYEGL+WLSN++ N
Sbjct:   46 IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKN 179          

HSP 2 Score: 67.3958 bits (163), Expect = 9.161e-72
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MGL  +KLFS LF  KEMRILMVGLD  GKTT+LYKLKLGE++
Sbjct:    1 MGLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVI 43          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 2.650e-71
Identity = 98/134 (73.13%), Postives = 123/134 (91.79%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 541
            IPTIGFNVETVE++NISFTVWDVGGQDKIRPLWRHY+ N  GLIFVVDSNDR+R+ +AR+ LHRM+NE+EL+DA++LVFANK DLPNAM+AAE+T+KL L+++R+R+W+IQSTCAT G+GLYEG DWL+ ++ N
Sbjct:   46 IPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNN 179          

HSP 2 Score: 67.3958 bits (163), Expect = 2.650e-71
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MGL  ++LF+RLF KK++RILMVGLDA GKTTILYK+KLGE+V
Sbjct:    1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVV 43          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 2.859e-64
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            +PTIGFNVETVEYKNI+FTVWDVGGQD IRPLWRHY+QN   LI+V+DS D +  R+ +A++ELH +L EDELRDA LLVFANK DLP AM+  ++T++LGL  L++R WYIQ TCA SG+GLY+GLDWLS+ I +K
Sbjct:   46 VPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKRDWYIQPTCARSGDGLYQGLDWLSDYIFDK 182          

HSP 2 Score: 65.0846 bits (157), Expect = 2.859e-64
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG   +K+F +LF+KKE+RILMVGLDA GKTTILYKL LGE+V
Sbjct:    1 MGQGASKIFGKLFSKKEVRILMVGLDAAGKTTILYKLMLGEVV 43          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 1.176e-62
Identity = 90/131 (68.70%), Postives = 110/131 (83.97%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 532
            IPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+   QGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANK DLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:   42 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          

HSP 2 Score: 57.3806 bits (137), Expect = 1.176e-62
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1
Query:   22 KLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            K+ S++F  KEMRILM+GLDA GKTTILYKLKLG+ V
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSV 39          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.176e-62
Identity = 90/131 (68.70%), Postives = 110/131 (83.97%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 532
            IPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+   QGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANK DLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:   42 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          

HSP 2 Score: 57.3806 bits (137), Expect = 1.176e-62
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1
Query:   22 KLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            K+ S++F  KEMRILM+GLDA GKTTILYKLKLG+ V
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSV 39          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 1.176e-62
Identity = 90/131 (68.70%), Postives = 110/131 (83.97%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 532
            IPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+   QGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANK DLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:   42 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          

HSP 2 Score: 57.3806 bits (137), Expect = 1.176e-62
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1
Query:   22 KLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            K+ S++F  KEMRILM+GLDA GKTTILYKLKLG+ V
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSV 39          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 1.176e-62
Identity = 90/131 (68.70%), Postives = 110/131 (83.97%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 532
            IPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+   QGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANK DLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:   42 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          

HSP 2 Score: 57.3806 bits (137), Expect = 1.176e-62
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1
Query:   22 KLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            K+ S++F  KEMRILM+GLDA GKTTILYKLKLG+ V
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSV 39          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.000e-62
Identity = 89/131 (67.94%), Postives = 109/131 (83.21%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 532
            IPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+   QGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANK DLP+AM   EI +KLGL  +R R+WY+Q +CA SG+GLYEGL WL++N
Sbjct:   42 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAASGDGLYEGLTWLTSN 172          

HSP 2 Score: 58.5362 bits (140), Expect = 2.000e-62
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1
Query:   22 KLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            K+FS++F  KEMRILM GLDA GKTTILYKLKLG+ V
Sbjct:    3 KMFSKIFGNKEMRILMRGLDAAGKTTILYKLKLGQSV 39          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 202.986 bits (515), Expect = 2.608e-62
Identity = 89/131 (67.94%), Postives = 110/131 (83.97%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 532
            IPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+   QGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANK DLP+AM   EI +KLGL  +R R+WY+Q +CAT+G+GLYEGL WL++N
Sbjct:   42 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSN 172          

HSP 2 Score: 57.3806 bits (137), Expect = 2.608e-62
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1
Query:   22 KLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            K+ S++F  KEMRILM+GLDA GKTTILYKLKLG+ V
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSV 39          
The following BLAST results are available for this feature:
BLAST of CK936034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
ARF1_PLAFA4.130e-7273.88ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF1_YEAST9.161e-7276.87ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF1_PLAFO2.650e-7173.13ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF_GIALA2.859e-6467.15ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF6_RAT1.176e-6268.70ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG1.176e-6268.70ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE1.176e-6268.70ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN1.176e-6268.70ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_XENLA2.000e-6267.94ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF6_CHICK2.608e-6267.94ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004387_G04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936034 ID=CK936034; Name=CK936034; organism=Citrus sinensis; type=EST; length=672bp
AAAATGGGGCTGTCTTTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAA
AGAGATGAGAATTCTCATGGTAGGTCTCGATGCACCTGGTAAGACTACTA
TCCTGTACAAGCTTAAGCTCGGAGAGATCGTCNNACACCATTCCTACCAT
TGGATTTAATGTAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCT
GGGATGTTGGGGGTCAAGACAAGATCCGACCTTTGTGGAGACATTATTTC
CAAAACGCCCAAGGACTCATCTTTGTGGTTGACAGTAATGATCGCGACCG
TGTGGTAGAAGCTAGGGATGAGTTGCACAGAATGTTGAATGAGGATGAAT
TGAGAGATGCTGTGCTGCTTGTATTTGCTAACAAGCACGATCTTCCAAAT
GCAATGAATGCTGCTGAGATAACTGACAAGCTTGGCCTTCACTCTCTTCG
CCAGCGCCACTGGTATATCCAGAGCACATGTGCCACTTCTGGTGAAGGGC
TGTATGAGGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGCATAG
ACAACTAAATTTTGAGTTTTGGGTTGCCGCAACTGCTGAAATACAGAGTT
AACAACACATCTCAAGTGTTCTTGCTTTCCTTCCTGTAATAGCTTCGTTG
CCCGTTTTACTGTGTTTGTTGT
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