CK936034

Overview
NameCK936034
Unique NameCK936034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.282e-61
Identity = 89/131 (67.94%), Postives = 109/131 (83.21%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 532
            IPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+   QGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANK DLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GL EGL WL++N
Sbjct:   42 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLSEGLIWLTSN 172          

HSP 2 Score: 58.5362 bits (140), Expect = 1.282e-61
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1
Query:   22 KLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            KL S++F  KEMRILM+GLDA GKTTILYKLKLG+ V
Sbjct:    3 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSV 39          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 2.834e-61
Identity = 93/135 (68.89%), Postives = 112/135 (82.96%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            +PTIGFN+ETVEYK I+FTVWD+GGQ+KIR LWRHYFQNAQGLIFVVDS+D +R+ EAR+ELHR+L ++EL  A +LVFANK D  NA+  AE+ +KLGLHSL +R W IQ T A SG+GLYEGL+WLS  I NK
Sbjct:   46 VPTIGFNLETVEYKGINFTVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEGACVLVFANKQDSRNALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTIPNK 180          

HSP 2 Score: 57.7658 bits (138), Expect = 2.834e-61
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG  F+++  R   K ++RILMVGLD  GKTTILYKLKLGE+V
Sbjct:    1 MGARFSRIAKRFLPKSKVRILMVGLDGSGKTTILYKLKLGEVV 43          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.665e-58
Identity = 86/131 (65.65%), Postives = 103/131 (78.63%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 532
            IPT+GFNVETV YKNI F VWDVGGQDKIRPLWRHYF   +GLIFVVDS D +R+ EAR ELHR++++ E+RD +LLV ANK DLP A++ A+ITD L L  L+ R W +Q TCA +G+GL EGL WLS N
Sbjct:   50 IPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQN 180          

HSP 2 Score: 60.8474 bits (146), Expect = 3.665e-58
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1
Query:   16 FTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            F+K FSRLF+ KEMRILM+GLDA GKTTILYKLKL + V
Sbjct:    9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSV 47          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 2.131e-55
Identity = 80/132 (60.61%), Postives = 100/132 (75.76%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 535
            IPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF N Q +I+VVDS+D DR+  A++E H +L EDEL+ AV+L+FANK DLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLDWLSN +
Sbjct:   46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          

HSP 2 Score: 59.3066 bits (142), Expect = 2.131e-55
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG+ FT++FS +F  KE RIL++GLD  GKTTILY+L++GE+V
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVV 43          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 6.157e-55
Identity = 79/132 (59.85%), Postives = 100/132 (75.76%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 535
            IPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF N Q +I+VVDS+D DR+  A++E H +L E+EL+ AV+L+FANK DLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLDWLSN +
Sbjct:   46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          

HSP 2 Score: 59.3066 bits (142), Expect = 6.157e-55
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG+ FT++FS +F  KE RIL++GLD  GKTTILY+L++GE+V
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVV 43          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.933e-53
Identity = 77/135 (57.04%), Postives = 104/135 (77.04%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVET+EYKN+S TVWDVGGQ KIRPLW+HY+  +  +IFVVDS DR+R+ E ++E+  +L +DEL+   +LVFANK D+ NAMN AEI + L L+S++ R WY+Q   A   +G+YEG DW++N++ NK
Sbjct:   54 IPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          

HSP 2 Score: 53.5286 bits (127), Expect = 1.933e-53
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   16 FTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            F+ +FS    KKE RILM+GLD  GK+T+LYKLKLG++V
Sbjct:   13 FSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVV 51          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.234e-50
Identity = 74/135 (54.81%), Postives = 100/135 (74.07%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVET+ YKN+S TVWDVGGQ KIR LW+HY+     +IFVVDS DR+R+ E ++E+  +L +DEL+   +LV ANK D+ NAMN AEI + L L+S++ R WY+Q   A   +G+YEG DW++N++ NK
Sbjct:   54 IPTIGFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          

HSP 2 Score: 50.8322 bits (120), Expect = 3.234e-50
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   16 FTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            F+ +FS    KK+ RILM+GLD  GK+T+L+KLKLG++V
Sbjct:   13 FSNIFSLFEGKKDTRILMIGLDGAGKSTLLFKLKLGDVV 51          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.234e-50
Identity = 74/136 (54.41%), Postives = 102/136 (75.00%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA-TSGEGLYEGLDWLSNNIANK 544
            +PTIGFNVET+EYKN+S TVWDVGGQ KIR LW+HY+     +IFVVDS DR+R+ E ++E+  +L ++EL+   +L+FANK D+ NAMN +EI D L L+S++ R WY+Q   A  S  G+YEG DW++N++ NK
Sbjct:   54 VPTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIKDRKWYVQPCSAIKSPHGIYEGFDWVANSLNNK 189          

HSP 2 Score: 52.7582 bits (125), Expect = 3.234e-50
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   16 FTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            F+ +FS    KK+ RILM+GLD  GK+T+LYKLKLG+IV
Sbjct:   13 FSNIFSLFEGKKQTRILMIGLDGAGKSTLLYKLKLGDIV 51          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.885e-48
Identity = 83/133 (62.41%), Postives = 102/133 (76.69%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 535
            IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ N Q ++FVVDS+ RDR+ EA  EL ++L E ELRDA+LL+FANK D+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  +
Sbjct:  433 IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565          

HSP 2 Score: 36.5798 bits (83), Expect = 2.885e-48
Identity = 16/29 (55.17%), Postives = 22/29 (75.86%), Query Frame = 1
Query:   46 KKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            K E+R++ +GLD  GKTTIL+KLK  E +
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFM 430          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.885e-48
Identity = 83/133 (62.41%), Postives = 102/133 (76.69%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 535
            IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ N Q ++FVVDS+ RDR+ EA  EL ++L E ELRDA+LL+FANK D+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  +
Sbjct:  433 IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565          

HSP 2 Score: 36.5798 bits (83), Expect = 2.885e-48
Identity = 16/29 (55.17%), Postives = 22/29 (75.86%), Query Frame = 1
Query:   46 KKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            K E+R++ +GLD  GKTTIL+KLK  E +
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFM 430          
The following BLAST results are available for this feature:
BLAST of CK936034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
ARF3_DROME1.282e-6167.94ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF4_ARATH2.834e-6168.89Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF2_SCHPO3.665e-5865.65Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARF3_ARATH2.131e-5560.61ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP6.157e-5559.85ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARFJ_DICDI1.933e-5357.04ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARFK_DICDI3.234e-5054.81ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARFH_DICDI3.234e-5054.41ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARD1_MOUSE2.885e-4862.41GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN2.885e-4862.41GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004387_G04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936034 ID=CK936034; Name=CK936034; organism=Citrus sinensis; type=EST; length=672bp
AAAATGGGGCTGTCTTTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAA
AGAGATGAGAATTCTCATGGTAGGTCTCGATGCACCTGGTAAGACTACTA
TCCTGTACAAGCTTAAGCTCGGAGAGATCGTCNNACACCATTCCTACCAT
TGGATTTAATGTAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCT
GGGATGTTGGGGGTCAAGACAAGATCCGACCTTTGTGGAGACATTATTTC
CAAAACGCCCAAGGACTCATCTTTGTGGTTGACAGTAATGATCGCGACCG
TGTGGTAGAAGCTAGGGATGAGTTGCACAGAATGTTGAATGAGGATGAAT
TGAGAGATGCTGTGCTGCTTGTATTTGCTAACAAGCACGATCTTCCAAAT
GCAATGAATGCTGCTGAGATAACTGACAAGCTTGGCCTTCACTCTCTTCG
CCAGCGCCACTGGTATATCCAGAGCACATGTGCCACTTCTGGTGAAGGGC
TGTATGAGGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGCATAG
ACAACTAAATTTTGAGTTTTGGGTTGCCGCAACTGCTGAAATACAGAGTT
AACAACACATCTCAAGTGTTCTTGCTTTCCTTCCTGTAATAGCTTCGTTG
CCCGTTTTACTGTGTTTGTTGT
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