CK936034

Overview
NameCK936034
Unique NameCK936034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 3.817e-48
Identity = 77/132 (58.33%), Postives = 98/132 (74.24%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 535
            IPTIGFNVETV ++ I+ TVWDVGGQ KIR LW++YF N   L+FVVDS+D +R+ EA++EL  +L E EL D+ LLVFANK D+PNA + AE+T  L L SL+ R W+I  T A SG+GLYEGL W+   +
Sbjct:   46 IPTIGFNVETVTFQKITLTVWDVGGQKKIRALWKYYFPNTTTLVFVVDSSDIERIPEAKEELFSLLAEPELADSHLLVFANKQDMPNARSPAELTQLLDLGSLKNREWFICGTNAHSGQGLYEGLMWVKKQM 177          

HSP 2 Score: 52.7582 bits (125), Expect = 3.817e-48
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MGL F+K+ S +F   E R LM+GLD  GKTTILYKLKL E V
Sbjct:    1 MGLFFSKISSFMFPNIECRTLMLGLDGAGKTTILYKLKLNETV 43          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.436e-47
Identity = 72/135 (53.33%), Postives = 95/135 (70.37%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ N   +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VFANK D+  AM ++E+ + LGL +L+ R W I  T AT G GL E ++WL   + ++
Sbjct:   46 IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          

HSP 2 Score: 56.9954 bits (136), Expect = 1.436e-47
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG  F+ +FS LF  +EMRIL++GLD  GKTTILY+L++GE+V
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVV 43          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.403e-47
Identity = 82/133 (61.65%), Postives = 101/133 (75.94%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 535
            IPTIGFNVETVEYKN+ FT+WDVG + K+RPLW+HY+ N Q ++FVVDS+ RDR+ EA  EL ++L E ELRDA+LL+FANK D+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  +
Sbjct:  413 IPTIGFNVETVEYKNLKFTIWDVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 545          

HSP 2 Score: 36.5798 bits (83), Expect = 2.403e-47
Identity = 16/29 (55.17%), Postives = 22/29 (75.86%), Query Frame = 1
Query:   46 KKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            K E+R++ +GLD  GKTTIL+KLK  E +
Sbjct:  382 KMEIRVVTLGLDGAGKTTILFKLKQDEFM 410          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.439e-47
Identity = 72/135 (53.33%), Postives = 94/135 (69.63%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ N   +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VFANK D+  AM  +E+ + LGL +L+ R W I  T AT G GL E ++WL   + ++
Sbjct:   46 IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          

HSP 2 Score: 56.9954 bits (136), Expect = 2.439e-47
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG  F+ +FS LF  +EMRIL++GLD  GKTTILY+L++GE+V
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVV 43          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.179e-47
Identity = 72/135 (53.33%), Postives = 94/135 (69.63%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ N   +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VFANK D+  AM  +E+ + LGL +L+ R W I  T AT G GL E ++WL   + ++
Sbjct:   46 IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          

HSP 2 Score: 56.9954 bits (136), Expect = 3.179e-47
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG  F+ +FS LF  +EMRIL++GLD  GKTTILY+L++GE+V
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVV 43          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.179e-47
Identity = 72/135 (53.33%), Postives = 94/135 (69.63%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ N   +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VFANK D+  AM  +E+ + LGL +L+ R W I  T AT G GL E ++WL   + ++
Sbjct:   46 IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          

HSP 2 Score: 56.9954 bits (136), Expect = 3.179e-47
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG  F+ +FS LF  +EMRIL++GLD  GKTTILY+L++GE+V
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVV 43          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 7.035e-47
Identity = 70/131 (53.44%), Postives = 97/131 (74.05%), Query Frame = 2
Query:  143 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLH-SLRQRHWYIQSTCATSGEGLYEGLDWLSNN 532
            PT+GFNVETV YKN+ F +WDVGGQ ++RPLWRHYF     LIFV+DS+ R+R+ EA++EL+ ++ E E+ + VLLV+ANK DL +AM   E++D L L  +L+ + W +  + A SG+GL EGL W+SNN
Sbjct:   47 PTVGFNVETVTYKNVKFNMWDVGGQQRLRPLWRHYFPATTALIFVIDSSARNRMEEAKEELYSIIGEKEMENVVLLVWANKQDLKDAMKPQEVSDFLELEKNLKNQPWCVIGSNALSGQGLVEGLSWISNN 177          

HSP 2 Score: 56.6102 bits (135), Expect = 7.035e-47
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEI 129
            MG S +K+  +LF  KEM+ILM+GLD  GKTTILYKLKL +I
Sbjct:    1 MGNSISKVLGKLFGSKEMKILMLGLDKAGKTTILYKLKLNKI 42          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 155.221 bits (391), Expect = 2.646e-46
Identity = 72/127 (56.69%), Postives = 92/127 (72.44%), Query Frame = 2
Query:  143 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 523
            PTIGFNVET+ YKN+   VWD+GGQ  IRP WR Y+ +   +IFVVDS D+DR+  A  ELH ML E+EL+DA LLVFANK D P A++A+E++ +L L  L+ R W I ++ A  GEG+ EGLDWL
Sbjct:   48 PTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174          

HSP 2 Score: 51.6026 bits (122), Expect = 2.646e-46
Identity = 24/44 (54.55%), Postives = 36/44 (81.82%), Query Frame = 1
Query:    4 MGLSFTKLFSRLF-AKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG  F+ +F +L+ + KE+RIL++GLD  GKTTILY+L++GE+V
Sbjct:    1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVV 44          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 151.754 bits (382), Expect = 5.286e-44
Identity = 72/135 (53.33%), Postives = 93/135 (68.89%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 544
            IPTIGFNVE V YKN+ F VWD+GGQ  IRP WR Y+ N   +I+VVDS DRDR+  ++DEL  ML E+EL  A+L+V ANK D+   M  AE+   LGL +L+ R + I  T AT GEGL + +DWLSN + ++
Sbjct:   45 IPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQSR 179          

HSP 2 Score: 47.3654 bits (111), Expect = 5.286e-44
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1
Query:   28 FSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            F  L   +EMRIL++GLD  GKTTILY+L++GE+V
Sbjct:    8 FRGLLGSREMRILILGLDGAGKTTILYRLQVGEVV 42          
BLAST of CK936034 vs. ExPASy Swiss-Prot
Match: ARFD_DICDI (ADP-ribosylation factor D OS=Dictyostelium discoideum GN=arrD PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.166e-43
Identity = 62/132 (46.97%), Postives = 94/132 (71.21%), Query Frame = 2
Query:  140 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNAQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKHDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 535
            I T+G+NVET+++K+++ T+WD+ G+++IR LW+ ++     +IFVVDS+DR R+ EA  EL +++ E+EL+   LL+FA K D  + M   E+TD+LGLH ++ R WY+Q T    G G+YEGLDWLS  I
Sbjct:   46 ISTLGYNVETIQHKHLNLTLWDLAGEERIRTLWKPFYNKCTAIIFVVDSSDRLRIDEAASELAKLMKEEELKGCSLLIFATKQDCISPMEIPELTDQLGLHDIKDRRWYVQPTRTLEGIGIYEGLDWLSTKI 177          

HSP 2 Score: 51.9878 bits (123), Expect = 1.166e-43
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1
Query:    4 MGLSFTKLFSRLFAKKEMRILMVGLDAPGKTTILYKLKLGEIV 132
            MG+S +  FS +F  K +++LM+GLD  GKTTILYKL L E+V
Sbjct:    1 MGISSSNPFSSIFKSKAIKLLMLGLDGSGKTTILYKLMLNEVV 43          
The following BLAST results are available for this feature:
BLAST of CK936034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
ARF11_CAEEL3.817e-4858.33ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]
ARL1_HUMAN1.436e-4753.33ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARD1_RAT2.403e-4761.65GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARL1_BOVIN2.439e-4753.33ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARL1_RAT3.179e-4753.33ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE3.179e-4753.33ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARF3_YEAST7.035e-4753.44ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]
ARL1_YEAST2.646e-4656.69ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARL1_DROME5.286e-4453.33ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]
ARFD_DICDI1.166e-4346.97ADP-ribosylation factor D OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004387_G04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936034 ID=CK936034; Name=CK936034; organism=Citrus sinensis; type=EST; length=672bp
AAAATGGGGCTGTCTTTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAA
AGAGATGAGAATTCTCATGGTAGGTCTCGATGCACCTGGTAAGACTACTA
TCCTGTACAAGCTTAAGCTCGGAGAGATCGTCNNACACCATTCCTACCAT
TGGATTTAATGTAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCT
GGGATGTTGGGGGTCAAGACAAGATCCGACCTTTGTGGAGACATTATTTC
CAAAACGCCCAAGGACTCATCTTTGTGGTTGACAGTAATGATCGCGACCG
TGTGGTAGAAGCTAGGGATGAGTTGCACAGAATGTTGAATGAGGATGAAT
TGAGAGATGCTGTGCTGCTTGTATTTGCTAACAAGCACGATCTTCCAAAT
GCAATGAATGCTGCTGAGATAACTGACAAGCTTGGCCTTCACTCTCTTCG
CCAGCGCCACTGGTATATCCAGAGCACATGTGCCACTTCTGGTGAAGGGC
TGTATGAGGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGCATAG
ACAACTAAATTTTGAGTTTTGGGTTGCCGCAACTGCTGAAATACAGAGTT
AACAACACATCTCAAGTGTTCTTGCTTTCCTTCCTGTAATAGCTTCGTTG
CCCGTTTTACTGTGTTTGTTGT
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