CK936044

Overview
NameCK936044
Unique NameCK936044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.549e-67
Identity = 122/221 (55.20%), Postives = 149/221 (67.42%), Query Frame = 2
Query:   17 SVSLLAAAMEKERKLKN-EESANGVV-EKGXXXXXXXXXXXKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVV 673
            S  L  A++E+E+K  +     NGV  EK             + +IRAAIPKHCWVK+PWRS+SYV+RD            + N W  WPLYW AQGTMFWA+FVLGHDCGHGSFS +  LNS VGH+LHSSILVPY+GWRISHRTHHQ+HG+ E+DESW P+PEK++  LD+ TR+LRF+            + RSPGK GSHF+P S LF P ERK V+
Sbjct:   64 SAPLRVASIEEEQKSVDLTNGTNGVEHEKLPEFDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSLDTVTRMLRFTAPFPLLAFPVYLFSRSPGKTGSHFDPSSDLFVPNERKDVI 284          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.915e-25
Identity = 60/189 (31.75%), Postives = 98/189 (51.85%), Query Frame = 2
Query:  137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFN------TWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEK--------IYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGER 661
            +G+++ AIP HC+ ++   S SYV+ D           T+F+      +   WP+YWV QG +   ++V+ H+CGH +FS+   ++  VG  LHS++LVPY  W+ISHR HH N G+++ DE +VP P+         + + L  +  +L                 R      SH++PY+ ++S  ER
Sbjct:   38 VGQLKKAIPPHCFQRSLLTSFSYVVYDLSFAFIFYIATTYFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGRAVSLLVTLTIGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRER 226          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.718e-24
Identity = 65/190 (34.21%), Postives = 96/190 (50.53%), Query Frame = 2
Query:  137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPL-------YWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPE---KIYSKL--DSSTRILRFSXXXXXXXXXXXXWY---RSPGKDGSHFNPYSSLFSPGER 661
            + +I+ AIP HC+ ++  RS SYV+ D           TH+      PL       YW  QG +   ++V+ H+CGH +FS+  LL+  VG ILHS++LVPY  W+ SHR HH N G++E DE +VP  +   K YSK   +   R+L  +                 R   +   H++PY  ++S  ER
Sbjct:   33 LSQIKKAIPPHCFQRSVLRSFSYVVYDLTIAFCLYYVATHYFHLLPGPLSFRGMAIYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSCIKWYSKYLNNPPGRVLTLAVTLTLGWPLYLALNVSGRPYDRFACHYDPYGPIYSDRER 222          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.793e-23
Identity = 51/127 (40.16%), Postives = 74/127 (58.27%), Query Frame = 2
Query:  137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXT-------HFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVP 496
            +GE++ AIP HC+ ++  RS SY++ D           T       H  ++  WPLYW  QG +   ++V+ H+CGH +FS+   L+  VG I HS +LVPY  W+ SHR HH N G++E DE +VP
Sbjct:   33 VGELKKAIPPHCFKRSIPRSFSYLIWDIIVASCFYYVATTYFPLLPHPLSYVAWPLYWACQGVVLTGVWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVP 159          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.793e-23
Identity = 50/127 (39.37%), Postives = 75/127 (59.06%), Query Frame = 2
Query:  137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNT-------WFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVP 496
            +G+++ AIP HC+ ++  RS SY++ D           T++ +       +  WPLYW  QG +   I+V+ H+CGH +FS+   L+  VG I HS +LVPY  W+ SHR HH N G++E DE +VP
Sbjct:   33 VGDLKKAIPPHCFKRSIPRSFSYLISDIIIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVP 159          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.982e-22
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 2
Query:  137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNT-------WFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVP 496
            I EIR  IP HC+ ++  R L +V  D           T  +        +  WP YW+ QG +   I+VL H+CGH SFS S  LN+ VG ILHS +LVPY+ WRISH  HH+  G++  D+ +VP
Sbjct:   40 IKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVP 166          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.982e-22
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 2
Query:  137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNT-------WFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVP 496
            I EIR  IP HC+ ++  R L +V  D           T  +        +  WP YW+ QG +   I+VL H+CGH SFS S  LN+ VG ILHS +LVPY+ WRISH  HH+  G++  D+ +VP
Sbjct:   40 IKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVP 166          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.855e-20
Identity = 54/194 (27.84%), Postives = 91/194 (46.91%), Query Frame = 2
Query:  137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFN-------TWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEK----IYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKD----GSHFNPYSSLFSPGERKAVV 673
            + +++ AIP HC+ ++  RS  Y++ D             +         +  WPLYW  Q ++   ++V+GH+CGH +FS+   ++  VG ILHS ++ PY  W+ SHR HH N  ++++DE ++P  +      Y  L+     L               +    GK      +HF+P S +F   ER  V+
Sbjct:   26 VSDLKQAIPPHCFKRSVIRSSYYIVHDAIIAYIFYFLADKYIPILPAPLAYLAWPLYWFCQASILTGLWVIGHECGHHAFSDYQWVDDTVGFILHSFLMTPYFSWKYSHRNHHANTNSLDNDEVYIPKSKAKVALYYKVLNHPPGRLLIMFITFTLGFPLYLFTNISGKKYERFANHFDPMSPIFKERERFQVL 219          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.470e-17
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 2
Query:  266 WFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIY 514
            WF  P+ WV  GT     FV+GHDCGH SFS +  +N +VGHIL   I+ P++ WRI H  HH+    +E D +W P  ++ Y
Sbjct:   67 WFLLPVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHHKYTNRMELDNAWQPWRKEEY 149          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.176e-16
Identity = 39/136 (28.68%), Postives = 67/136 (49.26%), Query Frame = 2
Query:  134 KIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRI 541
            K+ +I   +PK C+ K   ++ + VL              +   W+  P+ W+  GT     FV+GHDCGH SF++   +N  VGHI  + ++ P++ WR+ H  HH +   +E D +W P   + +    +  R+
Sbjct:   25 KLQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYLGIIYL-PWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHHLHTNKIEVDNAWDPWSVEAFQASPAIVRL 159          
The following BLAST results are available for this feature:
BLAST of CK936044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD3C_SOYBN1.549e-6755.20Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FD6E1_SOYBN1.915e-2531.75Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E2_SOYBN4.718e-2434.21Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU1.793e-2340.16Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH1.793e-2339.37Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_MORIS1.982e-2241.73Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP1.982e-2241.73Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD12_CREAL1.855e-2027.84Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
DESA_SPIPL1.470e-1744.58Fatty acid desaturase OS=Spirulina platensis GN=de... [more]
DESA_SYNY36.176e-1628.68Fatty acid desaturase OS=Synechocystis sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004387_D11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936044 ID=CK936044; Name=CK936044; organism=Citrus sinensis; type=EST; length=673bp
AAGCTCATTTCACTTCTCGGTTTCTTTGCTTGCTGCTGCAATGGAGAAAG
AAAGAAAGCTCAAGAATGAAGAGAGTGCCAATGGGGTTGTTGAGAAAGGA
GATTTCTTTGACCCGGCAGCTCCTCCTCCATTCAAGATTGGCGAGATCCG
TGCTGCCATTCCAAAGCATTGCTGGGTCAAGAATCCATGGAGGTCTTTGA
GCTATGTACTCAGAGATTTGCTTGTGGTTCTTGCATTGCTAGCTGCTGCT
ACTCACTTCAACACTTGGTTCTTTTGGCCTCTCTATTGGGTTGCTCAAGG
AACCATGTTCTGGGCTATTTTTGTTCTTGGCCATGACTGTGGCCATGGAA
GCTTTTCGGAAAGTCCTTTGCTGAACAGCTTTGTGGGACACATCCTGCAT
TCGTCAATTCTTGTACCTTACAACGGATGGAGAATTAGCCACAGAACACA
TCACCAAAACCATGGCAACGTTGAACATGATGAATCTTGGGTGCCGATGC
CTGAGAAGATTTACAGTAAATTGGATTCTAGTACAAGGATTCTGAGATTC
TCATTGCCTTTACCCATGTTAGCATACCCTGCATATCTGTGGTACCGAAG
TCCTGGAAAGGATGGATCTCATTTCAATCCTTACAGCAGTTTGTTTTCGC
CAGGGGAGAGAAAAGCAGTGGTG
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