CK936044
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 1.549e-67 Identity = 122/221 (55.20%), Postives = 149/221 (67.42%), Query Frame = 2 Query: 17 SVSLLAAAMEKERKLKN-EESANGVV-EKGXXXXXXXXXXXKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVV 673 S L A++E+E+K + NGV EK + +IRAAIPKHCWVK+PWRS+SYV+RD + N W WPLYW AQGTMFWA+FVLGHDCGHGSFS + LNS VGH+LHSSILVPY+GWRISHRTHHQ+HG+ E+DESW P+PEK++ LD+ TR+LRF+ + RSPGK GSHF+P S LF P ERK V+ Sbjct: 64 SAPLRVASIEEEQKSVDLTNGTNGVEHEKLPEFDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSLDTVTRMLRFTAPFPLLAFPVYLFSRSPGKTGSHFDPSSDLFVPNERKDVI 284
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.915e-25 Identity = 60/189 (31.75%), Postives = 98/189 (51.85%), Query Frame = 2 Query: 137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFN------TWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEK--------IYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGER 661 +G+++ AIP HC+ ++ S SYV+ D T+F+ + WP+YWV QG + ++V+ H+CGH +FS+ ++ VG LHS++LVPY W+ISHR HH N G+++ DE +VP P+ + + L + +L R SH++PY+ ++S ER Sbjct: 38 VGQLKKAIPPHCFQRSLLTSFSYVVYDLSFAFIFYIATTYFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGRAVSLLVTLTIGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRER 226
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 4.718e-24 Identity = 65/190 (34.21%), Postives = 96/190 (50.53%), Query Frame = 2 Query: 137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPL-------YWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPE---KIYSKL--DSSTRILRFSXXXXXXXXXXXXWY---RSPGKDGSHFNPYSSLFSPGER 661 + +I+ AIP HC+ ++ RS SYV+ D TH+ PL YW QG + ++V+ H+CGH +FS+ LL+ VG ILHS++LVPY W+ SHR HH N G++E DE +VP + K YSK + R+L + R + H++PY ++S ER Sbjct: 33 LSQIKKAIPPHCFQRSVLRSFSYVVYDLTIAFCLYYVATHYFHLLPGPLSFRGMAIYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSCIKWYSKYLNNPPGRVLTLAVTLTLGWPLYLALNVSGRPYDRFACHYDPYGPIYSDRER 222
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.793e-23 Identity = 51/127 (40.16%), Postives = 74/127 (58.27%), Query Frame = 2 Query: 137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXT-------HFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVP 496 +GE++ AIP HC+ ++ RS SY++ D T H ++ WPLYW QG + ++V+ H+CGH +FS+ L+ VG I HS +LVPY W+ SHR HH N G++E DE +VP Sbjct: 33 VGELKKAIPPHCFKRSIPRSFSYLIWDIIVASCFYYVATTYFPLLPHPLSYVAWPLYWACQGVVLTGVWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVP 159
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.793e-23 Identity = 50/127 (39.37%), Postives = 75/127 (59.06%), Query Frame = 2 Query: 137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNT-------WFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVP 496 +G+++ AIP HC+ ++ RS SY++ D T++ + + WPLYW QG + I+V+ H+CGH +FS+ L+ VG I HS +LVPY W+ SHR HH N G++E DE +VP Sbjct: 33 VGDLKKAIPPHCFKRSIPRSFSYLISDIIIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVP 159
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.982e-22 Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 2 Query: 137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNT-------WFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVP 496 I EIR IP HC+ ++ R L +V D T + + WP YW+ QG + I+VL H+CGH SFS S LN+ VG ILHS +LVPY+ WRISH HH+ G++ D+ +VP Sbjct: 40 IKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVP 166
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 1.982e-22 Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 2 Query: 137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNT-------WFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVP 496 I EIR IP HC+ ++ R L +V D T + + WP YW+ QG + I+VL H+CGH SFS S LN+ VG ILHS +LVPY+ WRISH HH+ G++ D+ +VP Sbjct: 40 IKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVP 166
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 1.855e-20 Identity = 54/194 (27.84%), Postives = 91/194 (46.91%), Query Frame = 2 Query: 137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFN-------TWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEK----IYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKD----GSHFNPYSSLFSPGERKAVV 673 + +++ AIP HC+ ++ RS Y++ D + + WPLYW Q ++ ++V+GH+CGH +FS+ ++ VG ILHS ++ PY W+ SHR HH N ++++DE ++P + Y L+ L + GK +HF+P S +F ER V+ Sbjct: 26 VSDLKQAIPPHCFKRSVIRSSYYIVHDAIIAYIFYFLADKYIPILPAPLAYLAWPLYWFCQASILTGLWVIGHECGHHAFSDYQWVDDTVGFILHSFLMTPYFSWKYSHRNHHANTNSLDNDEVYIPKSKAKVALYYKVLNHPPGRLLIMFITFTLGFPLYLFTNISGKKYERFANHFDPMSPIFKERERFQVL 219
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.470e-17 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 2 Query: 266 WFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIY 514 WF P+ WV GT FV+GHDCGH SFS + +N +VGHIL I+ P++ WRI H HH+ +E D +W P ++ Y Sbjct: 67 WFLLPVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHHKYTNRMELDNAWQPWRKEEY 149
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.176e-16 Identity = 39/136 (28.68%), Postives = 67/136 (49.26%), Query Frame = 2 Query: 134 KIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRI 541 K+ +I +PK C+ K ++ + VL + W+ P+ W+ GT FV+GHDCGH SF++ +N VGHI + ++ P++ WR+ H HH + +E D +W P + + + R+ Sbjct: 25 KLQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYLGIIYL-PWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHHLHTNKIEVDNAWDPWSVEAFQASPAIVRL 159 The following BLAST results are available for this feature:
BLAST of CK936044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >CK936044 ID=CK936044; Name=CK936044; organism=Citrus sinensis; type=EST; length=673bpback to top |