CK936044

Overview
NameCK936044
Unique NameCK936044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 34/89 (38.20%), Postives = 47/89 (52.81%), Query Frame = 2
Query:  266 WFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSS 532
            W+  PL W   GT     FV+GHDC H SFS++ L+   VG +    ++ PY  WR  H  HH     + HD +W P+P +   + DSS
Sbjct:  144 WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVPPE---EFDSS 229          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 2
Query:  266 WFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMP 502
            W+  PL W   GT     FV+GHDC H SFS++ L+   VG +    ++ PY  WR  H  HH     + HD +W P+P
Sbjct:  149 WYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVP 227          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 33/85 (38.82%), Postives = 44/85 (51.76%), Query Frame = 2
Query:  266 WFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVP-MPEKIYS 517
            W+  PL W   GT     FV+GHDC H SFS++ L+   VG +    ++ PY  WR  H  HH     +  D +W+P M E I S
Sbjct:  149 WYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFMPLIYPYEPWRFKHDQHHTKTNMLREDTAWLPIMKEDIES 233          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 30/78 (38.46%), Postives = 40/78 (51.28%), Query Frame = 2
Query:  266 WFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPM 499
            W+  PL WV  GT     FV+GHDC H SFS + L+   VG +    ++ PY  WR  H  HH     +  D +W P+
Sbjct:  143 WYLLPLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHPV 220          
The following BLAST results are available for this feature:
BLAST of CK936044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD6C_BRANA4.426e-1438.20Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]
FAD6C_ARATH4.426e-1439.24Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD6C_SPIOL2.869e-1338.82Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]
FAD6C_SOYBN4.894e-1338.46Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004387_D11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936044 ID=CK936044; Name=CK936044; organism=Citrus sinensis; type=EST; length=673bp
AAGCTCATTTCACTTCTCGGTTTCTTTGCTTGCTGCTGCAATGGAGAAAG
AAAGAAAGCTCAAGAATGAAGAGAGTGCCAATGGGGTTGTTGAGAAAGGA
GATTTCTTTGACCCGGCAGCTCCTCCTCCATTCAAGATTGGCGAGATCCG
TGCTGCCATTCCAAAGCATTGCTGGGTCAAGAATCCATGGAGGTCTTTGA
GCTATGTACTCAGAGATTTGCTTGTGGTTCTTGCATTGCTAGCTGCTGCT
ACTCACTTCAACACTTGGTTCTTTTGGCCTCTCTATTGGGTTGCTCAAGG
AACCATGTTCTGGGCTATTTTTGTTCTTGGCCATGACTGTGGCCATGGAA
GCTTTTCGGAAAGTCCTTTGCTGAACAGCTTTGTGGGACACATCCTGCAT
TCGTCAATTCTTGTACCTTACAACGGATGGAGAATTAGCCACAGAACACA
TCACCAAAACCATGGCAACGTTGAACATGATGAATCTTGGGTGCCGATGC
CTGAGAAGATTTACAGTAAATTGGATTCTAGTACAAGGATTCTGAGATTC
TCATTGCCTTTACCCATGTTAGCATACCCTGCATATCTGTGGTACCGAAG
TCCTGGAAAGGATGGATCTCATTTCAATCCTTACAGCAGTTTGTTTTCGC
CAGGGGAGAGAAAAGCAGTGGTG
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