CK936100

Overview
NameCK936100
Unique NameCK936100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB8_BOVIN (Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 9.048e-61
Identity = 113/202 (55.94%), Postives = 146/202 (72.28%), Query Frame = 2
Query:  101 DTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKKLSGDD 706
            ++K  ++ A GTTTLAF F+ GV+VA DSRAS G YI++  V K+IEINPY+LGTM+G AADC +W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ +AYGV+DSGY+ D+SI          I HAT RD+ SGGV ++Y++  +GW K+   D
Sbjct:   62 ESKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGNYIATLKVNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIEEAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKVESTD 263          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB5_SCHPO (Proteasome subunit beta type-5 OS=Schizosaccharomyces pombe GN=pts1 PE=2 SV=3)

HSP 1 Score: 233.417 bits (594), Expect = 9.048e-61
Identity = 114/196 (58.16%), Postives = 145/196 (73.98%), Query Frame = 2
Query:   98 KDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGW 685
            K+    +K   GTTTLAF ++ G++V  DSRAS G  I+SQ+VKK+IEINPY+LGT+AGGAADCQFW   LG++CRLH+L NK  ISV+ ASK+L+NI YSY+G GLS+GTM+AG  + G  LYY+DS+G RLKG  FSVGSGS +AYGVLDSGY++D+S           I  AT RDA SGG  ++Y++  NGW
Sbjct:   50 KNKHCLIKMNHGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVNLYHIDENGW 245          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB8_RAT (Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1 SV=3)

HSP 1 Score: 232.261 bits (591), Expect = 2.016e-60
Identity = 113/203 (55.67%), Postives = 146/203 (71.92%), Query Frame = 2
Query:   98 KDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKKLSGDD 706
            ++ K  ++ A GTTTLAF F+ GV+VA DSRAS G YI++  V K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSGY+ D+S           I +AT RD+ SGGV ++Y++  +GW K+   D
Sbjct:   61 QERKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATIRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLARRAIVYATHRDSYSGGVVNMYHMKKDGWVKVESTD 263          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB8_MOUSE (Proteasome subunit beta type-8 OS=Mus musculus GN=Psmb8 PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.306e-59
Identity = 112/203 (55.17%), Postives = 144/203 (70.94%), Query Frame = 2
Query:   98 KDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKKLSGDD 706
            ++    ++ A GTTTLAF F+ GV+VA DSRA+ G YISS  + K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSGY+ D+S           I +AT RD  SGGV ++Y++  +GW K+   D
Sbjct:   61 QERNVQIEMAHGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVVNMYHMKEDGWVKVESSD 263          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB8_HUMAN (Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 6.484e-59
Identity = 111/197 (56.35%), Postives = 142/197 (72.08%), Query Frame = 2
Query:  116 LKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKKLSGDD 706
            ++ A GTTTLAF F+ GV+ A DSRAS G YIS+  V K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSGY+ ++S           I +AT RD+ SGGV ++Y++  +GW K+   D
Sbjct:   67 IEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTD 263          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB5_YEAST (Proteasome component PRE2 OS=Saccharomyces cerevisiae GN=PRE2 PE=1 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 111/191 (58.12%), Postives = 142/191 (74.35%), Query Frame = 2
Query:  116 LKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGW 685
            +K A GTTTLAF F+ G++VA DSRA+ G +++SQ+VKK+IEINP++LGTMAGGAADCQFW   LG +CRLHEL  K RISV  ASK+L+N++Y Y+G GLS+GTMI G+  + GP +YYVDS+G RLKG  F VGSG  +AYGVLDS YK+D+S+          I  A  RDA SGG  ++Y+V  +GW
Sbjct:   70 IKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGW 260          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB8_CANFA (Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.464e-58
Identity = 112/204 (54.90%), Postives = 144/204 (70.59%), Query Frame = 2
Query:   95 QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKKLSGDD 706
            +K+ +  + H  GTTTLAF F+ GV+VA DSRA+ G YISS  V K+IEINP +LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++Y YRGM LS+G+MI GWD+ GPGLYYVD  G RL G  FS GSGS YAYGV+DSGY+  +S           I +AT RD+ SGG+ ++Y++  +GW K+   D
Sbjct:   62 EKNIRKEMVH--GTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWDKKGPGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQPSLSPEEAYELGRRAITYATHRDSYSGGIINMYHMKEDGWVKVESTD 263          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB11_HUMAN (Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47
Identity = 93/194 (47.94%), Postives = 129/194 (66.49%), Query Frame = 2
Query:  125 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKKLSGDD 706
            A GTTTLAF F+ GV+ AAD+R+S G Y++  +  K+I ++ ++LGT +G +ADC  W+R L  + RL EL   +  SV  A+KLL+ ++  YRG+ L V T + GWD +GP L+YV S+G RL+G  FSVGSGSPYAYGVLD GY++DMS           + HAT RDA SGG   +++V  +GW+ +S  D
Sbjct:   47 AHGTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDRSGPELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSVDLFHVRESGWEHVSRSD 240          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB11_MOUSE (Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.268e-46
Identity = 93/194 (47.94%), Postives = 128/194 (65.98%), Query Frame = 2
Query:  125 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKKLSGDD 706
            A GTTTLAF F+ GV+ AAD+R+S G Y++  + +K+I ++  +LGT +G +ADC  W+R L  + RL EL   +  SV G +KLLA ++  YRG+ L V T + GWD +GP L+YV S+G  L+G  FSVGSGSPYAYGVLD GY +DM+I          + HAT RDA SGG   +++V  +GW+ +S  D
Sbjct:   47 AHGTTTLAFRFRHGVIAAADTRSSCGSYVACPASRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMSCYRGLDLCVATALCGWDHSGPALFYVYSDGTCLQGDIFSVGSGSPYAYGVLDRGYHYDMTIQEAYTLARCAVAHATHRDAYSGGSVDLFHVRESGWEYVSRSD 240          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB8_PIG (Proteasome subunit beta type-8 (Fragment) OS=Sus scrofa GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.139e-29
Identity = 61/104 (58.65%), Postives = 75/104 (72.12%), Query Frame = 2
Query:  323 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRD 634
            RL+ L N  RISV+ ASKL +N++Y YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSG+++D+SI          I HAT RD
Sbjct:    1 RLYYLRNGARISVSAASKLXSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRD 104          
The following BLAST results are available for this feature:
BLAST of CK936100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
PSB8_BOVIN9.048e-6155.94Proteasome subunit beta type-8 OS=Bos taurus GN=PS... [more]
PSB5_SCHPO9.048e-6158.16Proteasome subunit beta type-5 OS=Schizosaccharomy... [more]
PSB8_RAT2.016e-6055.67Proteasome subunit beta type-8 OS=Rattus norvegicu... [more]
PSB8_MOUSE1.306e-5955.17Proteasome subunit beta type-8 OS=Mus musculus GN=... [more]
PSB8_HUMAN6.484e-5956.35Proteasome subunit beta type-8 OS=Homo sapiens GN=... [more]
PSB5_YEAST1.445e-5858.12Proteasome component PRE2 OS=Saccharomyces cerevis... [more]
PSB8_CANFA2.464e-5854.90Proteasome subunit beta type-8 OS=Canis familiaris... [more]
PSB11_HUMAN5.694e-4747.94Proteasome subunit beta type-11 OS=Homo sapiens GN... [more]
PSB11_MOUSE1.268e-4647.94Proteasome subunit beta type-11 OS=Mus musculus GN... [more]
PSB8_PIG3.139e-2958.65Proteasome subunit beta type-8 (Fragment) OS=Sus s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004386_G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IVF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936100 ID=CK936100; Name=CK936100; organism=Citrus sinensis; type=EST; length=708bp
TTCTCCTTTTTTCGAAACAGGCGACGAGCTCTGTCCTGAGTTATCCGCTG
CACCATCATTTTCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAG
GACACTAAAGCTACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTT
TATCTTTAAAGAGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGG
GAGGCTATATCTCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCT
TACATGCTTGGCACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCA
CAGAAATCTGGGCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTA
GAATTTCAGTTACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCT
TATCGTGGAATGGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGA
GACTGGTCCTGGGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAG
GAACACGGTTCTCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTG
GACAGCGGGTACAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGC
TAGAAGAGCTATTTATCATGCGACACCCAGAGATGCAGCCAGTGGTGGTG
TTGCAAGCGTTTATTATGTGGGACCAAATGGATGGAAGAAGCTGTCTGGT
GATGATGT
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