CK936100

Overview
NameCK936100
Unique NameCK936100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 66/197 (33.50%), Postives = 118/197 (59.90%), Query Frame = 2
Query:  119 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFS-VGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKKLSGDD 706
            K+ KGTTT+  +  +G+++A++ RA+MG +I+S++ KK+ +I+  +  T AG   D Q   R + ++ +L+++     +++ G + L++N L   R   + V  +I G D+ GPG+Y +D+ GG ++ TR S  GSGSP AYGVL+  Y+ +M++          I++AT RD+ASG    V  +    +K+L  ++
Sbjct:    5 KYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDVVVITKEAFKRLDPEE 201          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 69/194 (35.57%), Postives = 103/194 (53.09%), Query Frame = 2
Query:  128 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASG-GVASVYYVGPNGWKKLSGDD 706
            KGTTT+    K+GV+ A + RASMG  I+ ++  KI +I+ ++  T+AG  AD Q   + L  +  L+ + N  +IS+  A+ L ANIL+S R     V T++ G DE G  +Y +D  GG +     S GSGSP AYGVL+  Y  ++ +          I  A  RD  SG G+         G++ LS ++
Sbjct:    8 KGTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTEEEGFRMLSEEE 201          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 64/174 (36.78%), Postives = 98/174 (56.32%), Query Frame = 2
Query:  128 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASG 646
            KGTTT+  + K+GV++A + RA+MG +I+S++ KKI +I   M  T AG   D QF  R + I+  L+E+  +R+ +V   + L +N+L SYR     V  +I G D  G  +Y +D  GG ++     + GSGS  AYGVL+  +  ++ +          IY A  RD+ASG
Sbjct:   10 KGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASG 183          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 66/189 (34.92%), Postives = 100/189 (52.91%), Query Frame = 2
Query:  128 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWK 688
            KGTTT+  I  + V++A D RAS+G  ++ +  KK+ +I+ Y+  T+AG   D Q   R L  + +L+++   R I     + LL+NIL+S R        +I G+D   G  L+ +D  GG  +   F + GSGSP AYGVL++GY  DMS+          +  A  RD  SG   S+  +  +G K
Sbjct:    5 KGTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVK 193          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21
Identity = 65/193 (33.68%), Postives = 102/193 (52.85%), Query Frame = 2
Query:  128 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKKLSGDD 706
            KGTTT+  + K+GV++AAD RAS+G  I +++V KI +I+ ++    AG   D     R L  + +L+   + +R+SV   + LLANI+   +        ++ G+DE  P LY VD  GG  +    + GSG  +AY +LDS YK ++++          I  A  RD  SG    V  +   G+K+LS  +
Sbjct:    9 KGTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEK-PKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTITKEGYKELSDSE 200          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21
Identity = 64/190 (33.68%), Postives = 100/190 (52.63%), Query Frame = 2
Query:  128 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKKLS 697
            KGTTT+  +  +GV++AAD RAS+G  + +++V KI +I+ ++    AG   D     R L  + +L+   + +R+SV   + LLAN+L   R +      ++ G+DE  P LY VD  GG  +    + GSG  +AY VLDS Y+ D+ +          I  A  RD  SG    V  +   G+++LS
Sbjct:    9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTITEEGYRELS 197          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSMB_THEAC (Proteasome subunit beta OS=Thermoplasma acidophilum GN=psmB PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 57/177 (32.20%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASV 661
            GTTT+    K+ V++A + R +M  +I  ++ KK+ +I+ Y   T+AG   D Q   R +  +  L+ L  +  + +   + LL+N+L   + M   V  ++ G D T P ++ +D+ GG ++    S GSGSP+ YGVL+S Y   M++          I  A  RD+ASGG+  V
Sbjct:    8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDV 183          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 64/191 (33.51%), Postives = 100/191 (52.36%), Query Frame = 2
Query:  128 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKKLSG 700
            KGTTT+  + KEGV++AAD+RAS+G  I +++V KI +I+ ++    AG   D     R L  +  L++    + +SV   + LLANIL   +        ++ G+DE  P L+ VD  GG  +    + GSG  +AY +LDS Y+ +MS+          I  A  RD  +G    V  +  +G+K+  G
Sbjct:    9 KGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEK-PRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRDVFTGDGLLVVTITKDGYKEYRG 198          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 66/187 (35.29%), Postives = 99/187 (52.94%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGG-YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNG 682
            GTT LA  F  GV++ +DSRAS+GG Y+SS+++ K+I+++  +   +AG  AD Q   +    +   H +  +    V  A+ +L  + Y+ +   L  G + AGWD + GP +Y V + GG L    F++ GSGS Y YG  D+ YK DMS           +  A  RD  SGGVA +  +   G
Sbjct:   16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVITEEG 200          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 66/187 (35.29%), Postives = 99/187 (52.94%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGG-YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNG 682
            GTT LA  F  GV++ +DSRAS+GG Y+SS+++ K+I+++  +   +AG  AD Q   +    +   H +  +    V  A+ +L  + Y+ +   L  G + AGWD + GP +Y V + GG L    F++ GSGS Y YG  D+ YK DMS           +  A  RD  SGGVA +  +   G
Sbjct:   16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNVSGGVAHLVVITEEG 200          
The following BLAST results are available for this feature:
BLAST of CK936100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
PSMB_METTE9.132e-2933.50Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSMB_METTH3.248e-2635.57Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSMB_ARCFU1.782e-2436.78Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSMB_METJA6.339e-2234.92Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSMB_PYRHO5.366e-2133.68Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSMB_PYRAB5.366e-2133.68Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]
PSMB_THEAC2.663e-2032.20Proteasome subunit beta OS=Thermoplasma acidophilu... [more]
PSMB_PYRFU5.933e-2033.51Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PB6LB_SALSA7.749e-2035.29Proteasome subunit beta type-6-B like protein OS=S... [more]
PB6LA_SALSA7.749e-2035.29Proteasome subunit beta type-6-A like protein OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004386_G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IVF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936100 ID=CK936100; Name=CK936100; organism=Citrus sinensis; type=EST; length=708bp
TTCTCCTTTTTTCGAAACAGGCGACGAGCTCTGTCCTGAGTTATCCGCTG
CACCATCATTTTCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAG
GACACTAAAGCTACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTT
TATCTTTAAAGAGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGG
GAGGCTATATCTCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCT
TACATGCTTGGCACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCA
CAGAAATCTGGGCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTA
GAATTTCAGTTACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCT
TATCGTGGAATGGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGA
GACTGGTCCTGGGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAG
GAACACGGTTCTCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTG
GACAGCGGGTACAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGC
TAGAAGAGCTATTTATCATGCGACACCCAGAGATGCAGCCAGTGGTGGTG
TTGCAAGCGTTTATTATGTGGGACCAAATGGATGGAAGAAGCTGTCTGGT
GATGATGT
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