CK936100

Overview
NameCK936100
Unique NameCK936100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 60/185 (32.43%), Postives = 93/185 (50.27%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNG 682
            GTT +A  F  GV++ +DSR S G  + ++ + K+  ++  +   ++G AAD Q     +  +  +H +       V  A+ L+ NI Y Y+   LS   ++AGWD+ G G  YV +  G L    F+V GSGS Y YG +D+ Y+  MS           +  A  RD +SGGVA +  +   G
Sbjct:   18 GTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYK-EDLSAHLIVAGWDKRGGGQVYV-TLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGVAYLVTIDEKG 200          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 59/192 (30.73%), Postives = 97/192 (50.52%), Query Frame = 2
Query:  119 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKKL 694
            K  KGTTT+     +GV++AAD RAS G +++++ V+K++ I   +  T AG  AD QF +  L      + +     IS+ G +  LAN+L + +     V  +I G+D+  P L+ +D  G   +    + GSGSP A GVL+  Y   M++          ++ A  RD+ +G    V  +   G ++L
Sbjct:   10 KILKGTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVLKNIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYDDQ-PRLFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTLDEAADLAKRAVFSAIKRDSFTGTGVIVAKIHSKGHEEL 200          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 60/185 (32.43%), Postives = 93/185 (50.27%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNG 682
            GTT +A  F  GV++ +DSR S G  + ++ + K+  ++  +   ++G AAD Q     +  +  +H +       V  A+ L+ NI Y Y+   LS   ++AGWD+ G G  YV +  G L    F+V GSGS Y YG +D+ Y+  MS           +  A  RD +SGGVA +  +   G
Sbjct:   18 GTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYK-EELSAHLIVAGWDKRGGGQVYV-TLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGVAYLVTIDEKG 200          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB9_BOVIN (Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 58/174 (33.33%), Postives = 84/174 (48.28%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGV 652
            GTT +A  F  GV+V +DSR S G  + ++   K+  ++ ++   ++G AAD Q        +  LH +  +    V  A+ ++ NI Y YR   LS   M+AGWD+   G  Y    G  ++      GSGS Y YG +D+ YK  MS           I  A  RD +SGGV
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYRE-DLSAHLMVAGWDQREGGQVYGTMSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIALAMKRDGSSGGV 192          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 55/195 (28.21%), Postives = 91/195 (46.67%), Query Frame = 2
Query:  101 DTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNG 682
            D      H+ GTT +   +  GV++ ADSR S G Y+++++  KI ++   +    +G AAD Q     +      H + + +  +V  ++ L+  + Y+ + M L  G ++ GWD+   G  Y    GG +    F++ GSGS Y YG  D  +K +M+           +  A  RD ASGGV     +   G
Sbjct:    2 DLNLDAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNM-LQTGLIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDGASGGVVRTVIINSEG 195          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 61/194 (31.44%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKK--LSGD 703
            GTT +A  F  GV++ ADSR + G YI+++   K+  I+ ++    +G AAD Q     +  +   H +       V  A+ L   + Y YR   L  G +IAGWD    G  Y    GG +    F++ GSGS Y YG +D+ Y+  M+           +  A  RD +SGGV  +  +  +G ++  L GD
Sbjct:   33 GTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQESGVERQVLLGD 225          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 61/194 (31.44%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKK--LSGD 703
            GTT +A  F  GV++ ADSR + G YI+++   K+  I+ ++    +G AAD Q     +  +   H +       V  A+ L   + Y YR   L  G +IAGWD    G  Y    GG +    F++ GSGS Y YG +D+ Y+  M+           +  A  RD +SGGV  +  +  +G ++  L GD
Sbjct:   33 GTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQQSGVERQVLLGD 225          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 61/185 (32.97%), Postives = 90/185 (48.65%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNG 682
            GTT +A  F  GV+V +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH L  +    V  A+ ++ NI Y YR   L    M+AGWD+   G  Y  + GG L    F++ GSGS Y YG +D+ YK  M+           I  A  RD +SGGV  +  +  +G
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYR-EDLLAHLMVAGWDQHEGGQVY-GTMGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGGVIYLVTITADG 202          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 61/194 (31.44%), Postives = 92/194 (47.42%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGVASVYYVGPNGWKK--LSGD 703
            GTT +A  F  GV++ ADSR + G YI+++   K+  I+  +    +G AAD Q     +  +   H +       V  A+ L   + Y YR   L  G +IAGWD    G  Y    GG +    F++ GSGS Y YG +D+ Y+  M+           +  A  RD +SGGV  +  +  +G ++  L GD
Sbjct:   34 GTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGD 226          
BLAST of CK936100 vs. ExPASy Swiss-Prot
Match: PSB9_HUMAN (Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 59/175 (33.71%), Postives = 87/175 (49.71%), Query Frame = 2
Query:  131 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATPRDAASGGV 652
            GTT +A  F  GV++ +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH +  +    V  A+ ++ NI Y YR   LS   M+AGWD+   G  Y  + GG L    F++ GSGS + YG +D+ YK  MS           I  A  RD +SGGV
Sbjct:   20 GTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVY-GTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGV 192          
The following BLAST results are available for this feature:
BLAST of CK936100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
PSB9_ONCMY6.140e-1732.43Proteasome subunit beta type-9 OS=Oncorhynchus myk... [more]
PSMB_SULSO8.019e-1730.73Proteasome subunit beta OS=Sulfolobus solfataricus... [more]
PSB9_SALSA8.019e-1732.43Proteasome subunit beta type-9 OS=Salmo salar GN=p... [more]
PSB9_BOVIN1.047e-1633.33Proteasome subunit beta type-9 OS=Bos taurus GN=PS... [more]
PSB6_ARATH1.368e-1628.21Proteasome subunit beta type-6 OS=Arabidopsis thal... [more]
PSB6_MOUSE1.786e-1631.44Proteasome subunit beta type-6 OS=Mus musculus GN=... [more]
PSB6_RAT2.333e-1631.44Proteasome subunit beta type-6 OS=Rattus norvegicu... [more]
PSB9_RAT3.980e-1632.97Proteasome subunit beta type-9 OS=Rattus norvegicu... [more]
PSB6_HUMAN3.980e-1631.44Proteasome subunit beta type-6 OS=Homo sapiens GN=... [more]
PSB9_HUMAN6.788e-1633.71Proteasome subunit beta type-9 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004386_G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IVF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936100 ID=CK936100; Name=CK936100; organism=Citrus sinensis; type=EST; length=708bp
TTCTCCTTTTTTCGAAACAGGCGACGAGCTCTGTCCTGAGTTATCCGCTG
CACCATCATTTTCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAG
GACACTAAAGCTACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTT
TATCTTTAAAGAGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGG
GAGGCTATATCTCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCT
TACATGCTTGGCACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCA
CAGAAATCTGGGCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTA
GAATTTCAGTTACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCT
TATCGTGGAATGGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGA
GACTGGTCCTGGGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAG
GAACACGGTTCTCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTG
GACAGCGGGTACAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGC
TAGAAGAGCTATTTATCATGCGACACCCAGAGATGCAGCCAGTGGTGGTG
TTGCAAGCGTTTATTATGTGGGACCAAATGGATGGAAGAAGCTGTCTGGT
GATGATGT
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